ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3a19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPIC_SECCE (P46225) Triosephosphate isomerase, chloroplast precu... 53 3e-07
2TPIC_ARATH (Q9SKP6) Triosephosphate isomerase, chloroplast precu... 46 5e-05
3TPIC_FRAAN (Q9M4S8) Triosephosphate isomerase, chloroplast precu... 45 1e-04
4TPIC_SPIOL (P48496) Triosephosphate isomerase, chloroplast precu... 45 1e-04
5TPIS_STELP (P48497) Triosephosphate isomerase, cytosolic (EC 5.3... 45 1e-04
6O52A1_HUMAN (Q9UKL2) Olfactory receptor 52A1 (HPFH1OR) (Odorant ... 30 3.5

>TPIC_SECCE (P46225) Triosephosphate isomerase, chloroplast precursor (EC|
           5.3.1.1) (TIM) (Triose-phosphate isomerase)
          Length = 298

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -3

Query: 438 VGGASLKGPDFATICNSVTSKKVTA 364
           VGGASLKGPDFATICNSVTSKKVTA
Sbjct: 274 VGGASLKGPDFATICNSVTSKKVTA 298



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>TPIC_ARATH (Q9SKP6) Triosephosphate isomerase, chloroplast precursor (EC|
           5.3.1.1) (TIM) (Triose-phosphate isomerase)
          Length = 315

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 22/25 (88%), Positives = 23/25 (92%)
 Frame = -3

Query: 438 VGGASLKGPDFATICNSVTSKKVTA 364
           VGGASLKGP+FATI NSVTSKKV A
Sbjct: 291 VGGASLKGPEFATIVNSVTSKKVAA 315



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>TPIC_FRAAN (Q9M4S8) Triosephosphate isomerase, chloroplast precursor (EC|
           5.3.1.1) (TIM) (Triose-phosphate isomerase)
          Length = 314

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = -3

Query: 438 VGGASLKGPDFATICNSVTSKKVTA 364
           VGGASLKGP+FATI N+VTSKKV A
Sbjct: 290 VGGASLKGPEFATIVNAVTSKKVAA 314



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>TPIC_SPIOL (P48496) Triosephosphate isomerase, chloroplast precursor (EC|
           5.3.1.1) (TIM) (Triose-phosphate isomerase)
          Length = 322

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = -3

Query: 438 VGGASLKGPDFATICNSVTSKKVTA 364
           VGGASLKGP+FATI NSVT+KKV A
Sbjct: 298 VGGASLKGPEFATIVNSVTAKKVAA 322



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>TPIS_STELP (P48497) Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 257

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = -3

Query: 438 VGGASLKGPDFATICNSVTSKKVTA 364
           VGGASLKGP+FATI NSVT+KKV A
Sbjct: 233 VGGASLKGPEFATIINSVTAKKVAA 257



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>O52A1_HUMAN (Q9UKL2) Olfactory receptor 52A1 (HPFH1OR) (Odorant receptor|
           HOR3'beta4)
          Length = 312

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = +2

Query: 98  RFGSHGAPISHFLTH*PSCFSLITYFLLPPFLN 196
           RFGSH  P  H L      FS I Y L+PPFLN
Sbjct: 266 RFGSHIPPYIHIL------FSSI-YLLVPPFLN 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,022,283
Number of Sequences: 219361
Number of extensions: 1282523
Number of successful extensions: 2726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2724
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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