>gb|AY108655.1| Zea mays PCO136147 mRNA sequence
          Length = 1310

 Score = 54.0 bits (27), Expect = 5e-05
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcaaaacaaactcagtgtacagctcatatattgttttcagcaggatttccatatttt 60
           |||||||||| || || |||||||||||||| ||   ||||||||| |||||||| ||| 
Sbjct: 771 tcttcaaaacgaagtccgtgtacagctcataaatcactttcagcagcatttccatgtttg 712

                          
Query: 61  gagcgcctgtttcgc 75
           |||| || |||||||
Sbjct: 711 gagctccagtttcgc 697

>gb|U41541.2| Caenorhabditis elegans cosmid C41A3, complete sequence
          Length = 39649

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    caggatttccatattttgagc 64
             |||||||||||||||||||||
Sbjct: 15413 caggatttccatattttgagc 15393

>ref|NM_076522.1| Caenorhabditis elegans C41A3.1 (C41A3.1) mRNA, complete cds
          Length = 23490

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 44   caggatttccatattttgagc 64
            |||||||||||||||||||||
Sbjct: 5833 caggatttccatattttgagc 5813

>gb|AC101924.24| Mus musculus chromosome 1, clone RP24-391B5, complete sequence
          Length = 161617

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gcaggatttccatattttga 62
              ||||||||||||||||||||
Sbjct: 157467 gcaggatttccatattttga 157448

>gb|AC124743.5| Mus musculus BAC clone RP23-219C1 from 1, complete sequence
          Length = 220167

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gcaggatttccatattttga 62
             ||||||||||||||||||||
Sbjct: 87145 gcaggatttccatattttga 87126

>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence
          Length = 101912

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgtacagctcatatattgtt 38
             ||||||||||||||||||||
Sbjct: 55797 tgtacagctcatatattgtt 55816

>gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete sequence
          Length = 120951

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     tgtacagctcatatattgtt 38
              ||||||||||||||||||||
Sbjct: 113613 tgtacagctcatatattgtt 113632

>gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complete sequence
          Length = 145383

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     tgtacagctcatatattgtt 38
              ||||||||||||||||||||
Sbjct: 110512 tgtacagctcatatattgtt 110493

>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 19      tgtacagctcatatattgtt 38
               ||||||||||||||||||||
Sbjct: 3947309 tgtacagctcatatattgtt 3947290



 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      tgtacagctcatatattgtt 38
               ||||||||||||||||||||
Sbjct: 2101025 tgtacagctcatatattgtt 2101044

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      ttttcagcaggatttccata 56
               ||||||||||||||||||||
Sbjct: 3730304 ttttcagcaggatttccata 3730285

>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence
          Length = 252384

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ggatttccatattttgagc 64
              |||||||||||||||||||
Sbjct: 199052 ggatttccatattttgagc 199034

>gb|AC084387.1| Mus musculus BAC clone RP23-93H2 from 7, complete sequence
          Length = 175948

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     aggatttccatattttgag 63
              |||||||||||||||||||
Sbjct: 115387 aggatttccatattttgag 115369

>gb|AC124041.3| Oryctolagus cuniculus clone LB1-44O5, complete sequence
          Length = 106159

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 50     ttccatattttgagcgcctgttt 72
              |||||||||||||| ||||||||
Sbjct: 103141 ttccatattttgagtgcctgttt 103163

>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 50     ttccatattttgagcgcctgttt 72
              |||||||||||||| ||||||||
Sbjct: 833889 ttccatattttgagtgcctgttt 833911

>gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete sequence
          Length = 132131

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 50  ttccatattttgagcgcctgttt 72
           |||||||||||||| ||||||||
Sbjct: 109 ttccatattttgagtgcctgttt 131

>emb|AL928919.12| Mouse DNA sequence from clone RP24-239N23 on chromosome 4, complete
            sequence
          Length = 141866

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 35   tgttttcagcaggatttccatat 57
            ||||||||||||||||| |||||
Sbjct: 5839 tgttttcagcaggatttacatat 5861

>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence
          Length = 220038

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 46     ggatttccatattttgagc 64
              |||||||||||||||||||
Sbjct: 111130 ggatttccatattttgagc 111148

>emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chromosome X, complete
              sequence
          Length = 252977

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ggatttccatattttgagc 64
              |||||||||||||||||||
Sbjct: 103067 ggatttccatattttgagc 103049

>gb|AC158570.5| Mus musculus chromosome 7, clone RP24-62O14, complete sequence
          Length = 184623

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     aggatttccatattttgag 63
              |||||||||||||||||||
Sbjct: 137495 aggatttccatattttgag 137513

>emb|AL772335.5| Mouse DNA sequence from clone RP23-415F19 on chromosome 4, complete
              sequence
          Length = 201702

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     agcaggatttccatatttt 60
              |||||||||||||||||||
Sbjct: 171218 agcaggatttccatatttt 171236

>gb|AC161927.11| Mus musculus chromosome 1, clone RP23-22I18, complete sequence
          Length = 223377

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    atattgttttcagcaggat 49
             |||||||||||||||||||
Sbjct: 34733 atattgttttcagcaggat 34715


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 971,157
Number of Sequences: 3902068
Number of extensions: 971157
Number of successful extensions: 69231
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69156
Number of HSP's gapped (non-prelim): 75
length of query: 76
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 55
effective length of database: 17,151,101,840
effective search space: 943310601200
effective search space used: 943310601200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)