ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1o23 |
|---|---|
| Clone Library Name | barley_pub |
>YHR8_SCHPO (Q8WZK2) Protein C839.08c in chromosome II precursor| Length = 935 Score = 101 bits (251), Expect = 2e-21 Identities = 48/110 (43%), Positives = 75/110 (68%) Frame = -2 Query: 625 LLFMILFNVAFFGTGNFASIASFEISSVYRFITIFSPFLMTALLIFKLFIPYMLVICTFS 446 L F I NVAFFGTGN AS+++F + SV RFI +F+P ALL++ + +P++ + F Sbjct: 795 LFFYIFINVAFFGTGNVASLSTFALDSVKRFIPVFNPVTQGALLMYTILVPFIALSAAFG 854 Query: 445 AITKIVRIPRIGCYFLVILLSDVMTIHFFFLVQNTGSWMEIGNSISHFGI 296 + K + + +FL + ++D++TI+FF+LV++ GSW +IG SISHF I Sbjct: 855 IMNKRLGGIQQVTFFLAVGMADIVTINFFYLVKDEGSWKDIGVSISHFCI 904
>MCD4_YEAST (P36051) GPI-anchor biosynthetic protein MCD4| Length = 919 Score = 96.3 bits (238), Expect = 8e-20 Identities = 51/153 (33%), Positives = 83/153 (54%) Frame = -2 Query: 673 MAMTKDAYNYLIYESPLLFMILFNVAFFGTGNFASIASFEISSVYRFITIFSPFLMTALL 494 M KD + ++ L VAFFGTGN ASI+SF + SV R + IF PFLM ALL Sbjct: 762 MKTQKDENWLQVLRVSVIGFFLLQVAFFGTGNVASISSFSLESVCRLLPIFDPFLMGALL 821 Query: 493 IFKLFIPYMLVICTFSAITKIVRIPRIGCYFLVILLSDVMTIHFFFLVQNTGSWMEIGNS 314 + KL IPY L+ + + L+I +SD+++++FF+L++ GSW++IG + Sbjct: 822 MLKLIIPYGLLSTCLGILNLKLNFKDYTISSLIISMSDILSLNFFYLLRTEGSWLDIGIT 881 Query: 313 ISHFGIVSAQXXXXXXXFALTNIYTKDIEVSSR 215 IS++ + L ++ K++ + + Sbjct: 882 ISNYCLAILSSLFMLILEVLGHVLLKNVIIQDK 914
>T2R46_GORGO (Q645Z7) Taste receptor type 2 member 46 (T2R46)| Length = 309 Score = 33.1 bits (74), Expect = 0.82 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 8/135 (5%) Frame = -2 Query: 625 LLFMILFNVAFFGTGNFASIASFEIS----SVYRFITIFSPFLMTALLIFKLFIPYMLVI 458 LL+++L N ++ T + S E+ +V+ I+ FS +L T+L IF Y+L I Sbjct: 58 LLWVLLLN--WYATELNPAFYSIEVRITAYNVWAVISHFSNWLATSLSIF-----YLLKI 110 Query: 457 CTFSAITKIVRIPRIGCYFLVILLSDVMTI--HFFFLVQNTGSWME--IGNSISHFGIVS 290 FS + + R+ LVILL ++ + H F + N W + GN + S Sbjct: 111 ANFSNLIFLRLKRRVKSVVLVILLGPLLFLVCHLFVINMNQIIWTKEYEGNMTWKIKLRS 170 Query: 289 AQXXXXXXXFALTNI 245 A L N+ Sbjct: 171 AMYLSDTTVTILANL 185
>T2R46_PANTR (Q646C0) Taste receptor type 2 member 46 (T2R46)| Length = 309 Score = 32.3 bits (72), Expect = 1.4 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Frame = -2 Query: 625 LLFMILFNVAFFGTGNFASIASFEIS----SVYRFITIFSPFLMTALLIFKLFIPYMLVI 458 LL+++L N ++ T + S E+ +++ I FS +L T+L IF Y+L I Sbjct: 58 LLWVLLLN--WYATELNPAFYSIEVRITAYNLWAVINHFSNWLATSLSIF-----YLLKI 110 Query: 457 CTFSAITKIVRIPRIGCYFLVILLSDVMTI--HFFFLVQNTGSWME--IGNSISHFGIVS 290 FS + + R+ LVILL ++ + H F + N W + GN + S Sbjct: 111 ANFSNLIFLCLKRRVKSVVLVILLGPLLFLVCHLFVINMNQIIWTKEYEGNMTWKIKLRS 170 Query: 289 AQXXXXXXXFALTNI 245 A L N+ Sbjct: 171 AMYLSNTTVTILANL 185
>NUOJ_BUCBP (Q89AT8) NADH-quinone oxidoreductase chain J (EC 1.6.99.5) (NADH| dehydrogenase I, chain J) (NDH-1, chain J) Length = 164 Score = 32.0 bits (71), Expect = 1.8 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Frame = -2 Query: 655 AYNYLIYESPLLFMILFNVAFFGTGNFASIAS--------FEISSVYRFITIFSPFLMTA 500 A +IY ++ + +F + F A + I+ ++ + PF Sbjct: 53 ALEVIIYAGAIMVLFVFFIMMFNFKKSTLYAEKIFDKNNYYYINFLFLLCILIFPFFFIL 112 Query: 499 LLIFKLFIPYMLVICTFSAITKIVRIPRIGCYFLVILLSDVMTIHFFFLVQNTG 338 ++K I YM+V TK+V I Y LVI LS ++ + +V + G Sbjct: 113 SYLYKEKIFYMVVS------TKLVAIKLFSDYILVIELSSIVLLSALIIVSHIG 160
>HGDA_ACIFE (P11569) (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit (EC| 4.2.1.-) Length = 476 Score = 31.6 bits (70), Expect = 2.4 Identities = 26/114 (22%), Positives = 42/114 (36%) Frame = +2 Query: 191 HKFS*GQLPRRDFDIFCVYVCECKKQQHEDYLRTYNSKMANAVANLHPAPCVLDQEKEMN 370 HK+ +P DF + C +C C + +ED R +N + + D E N Sbjct: 170 HKYRQMTMPMPDFVLCCNNICNCMTKWYEDIARRHNIPLIMIDVPYNE----FDHVNEAN 225 Query: 371 CHHI*KQYYKKITTDTWNPYNLGYGTKCTYDKHIWNEQFENQKCRHKKWTKYCD 532 +I Q I + T +D+ + + +N K W K CD Sbjct: 226 VKYIRSQLDTAIR-------QMEEITGKKFDEDKFEQCCQNANRTAKAWLKVCD 272
>T2R66_PANPA (Q5Y4Y8) Taste receptor type 2 member 66 (T2R66)| Length = 309 Score = 31.6 bits (70), Expect = 2.4 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Frame = -2 Query: 625 LLFMILFNVAFFGTGNFASIASFEIS----SVYRFITIFSPFLMTALLIFKLFIPYMLVI 458 LL+++L N ++ T + S E+ +++ I FS +L T+L IF Y+L I Sbjct: 58 LLWVLLLN--WYATELNPAFYSIEVRITAYNLWAVINHFSNWLATSLSIF-----YLLKI 110 Query: 457 CTFSAITKIVRIPRIGCYFLVILLSDVMTI--HFFFLVQNTGSWME--IGNSISHFGIVS 290 FS + + R+ LVILL ++ + H F + N W + GN + S Sbjct: 111 ANFSNLIFLRLKRRVKSVVLVILLGPLLFLVCHLFVINMNQIIWTKEYEGNMTWKIKLRS 170 Query: 289 AQXXXXXXXFALTNI 245 A L N+ Sbjct: 171 AMYLSNTTVTILANL 185
>T2R46_HUMAN (P59540) Taste receptor type 2 member 46 (T2R46) (T2R54)| Length = 309 Score = 31.6 bits (70), Expect = 2.4 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Frame = -2 Query: 625 LLFMILFNVAFFGTGNFASIASFEIS----SVYRFITIFSPFLMTALLIFKLFIPYMLVI 458 LL++++ N ++ T + S E+ +V+ I FS +L T+L IF Y+L I Sbjct: 58 LLWVLVLN--WYATELNPAFNSIEVRITAYNVWAVINHFSNWLATSLSIF-----YLLKI 110 Query: 457 CTFSAITKIVRIPRIGCYFLVILLSDVMTI--HFFFLVQNTGSWME--IGNSISHFGIVS 290 FS + + R+ LVILL ++ + H F + N W + GN + S Sbjct: 111 ANFSNLIFLHLKRRVKSVVLVILLGPLLFLVCHLFVINMNQIIWTKEYEGNMTWKIKLRS 170 Query: 289 AQXXXXXXXFALTNI 245 A L N+ Sbjct: 171 AMYLSNTTVTILANL 185
>T2R46_PANPA (Q646E1) Taste receptor type 2 member 46 (T2R46)| Length = 309 Score = 31.2 bits (69), Expect = 3.1 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Frame = -2 Query: 625 LLFMILFNVAFFGTGNFASIASFEIS----SVYRFITIFSPFLMTALLIFKLFIPYMLVI 458 LL+++L N ++ T + S E+ +++ I FS +L T+L IF Y+L I Sbjct: 58 LLWVLLLN--WYATELNPAFYSIEVRITAYNLWAVINHFSNWLATSLSIF-----YLLKI 110 Query: 457 CTFSAITKIVRIPRIGCYFLVILLSDVMTI--HFFFLVQNTGSWME--IGNSISHFGIVS 290 FS + + R+ LVILL ++ + H F + N W + GN + S Sbjct: 111 ANFSNLIFLRLKRRVKSVVLVILLGPLLFLVCHLFVINMNQIIWTKEYEGNMTWKIKLRS 170 Query: 289 AQXXXXXXXFALTNI 245 A L N+ Sbjct: 171 AMYLSNITVTILANL 185
>RL25_COREF (Q8FQV5) 50S ribosomal protein L25 (General stress protein CTC)| Length = 202 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 441 MALNVHMTSIYGMNNLKIRSAVIRNGLNIVMNLYTDDISKLAML 572 M N+H+T +N+ V RNG+N VM L + + +LAM+ Sbjct: 39 MESNLHIT----LNHRDFAGLVRRNGVNAVMELDVEGVKQLAMI 78
>DSBB2_PSEAE (P57701) Disulfide bond formation protein B 2 (Disulfide| oxidoreductase 2) Length = 169 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -1 Query: 128 LLAFVLYVAQVLGLSSCSLWMFIVL 54 +LAFVLY+ V G + CSL +FI L Sbjct: 24 ILAFVLYLQHVRGFAPCSLCIFIRL 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,552,162 Number of Sequences: 219361 Number of extensions: 1995246 Number of successful extensions: 5460 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5257 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5457 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
