ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags1o21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Plus Query: 48 ttcatctccacgcttcgatccgttcgaccgtggagtttaaccggctcac 96 |||||| |||||||||||||||||| ||| | ||||||| || |||||| Sbjct: 2707819 ttcatcgccacgcttcgatccgttcaacctttgagtttatcctgctcac 2707867 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 ctactattcaggctacggctccc 207 ||||||||||||||||||||||| Sbjct: 2707944 ctactattcaggctacggctccc 2707966
>dbj|AK067300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106C08, full insert sequence Length = 1998 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Minus Query: 48 ttcatctccacgcttcgatccgttcgaccgtggagtttaaccggctcac 96 |||||| |||||||||||||||||| ||| | ||||||| || |||||| Sbjct: 1732 ttcatcgccacgcttcgatccgttcaacctttgagtttatcctgctcac 1684 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Minus Query: 185 ctactattcaggctacggctccc 207 ||||||||||||||||||||||| Sbjct: 1607 ctactattcaggctacggctccc 1585
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Plus Query: 48 ttcatctccacgcttcgatccgttcgaccgtggagtttaaccggctcac 96 |||||| |||||||||||||||||| ||| | ||||||| || |||||| Sbjct: 2707763 ttcatcgccacgcttcgatccgttcaacctttgagtttatcctgctcac 2707811 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 ctactattcaggctacggctccc 207 ||||||||||||||||||||||| Sbjct: 2707888 ctactattcaggctacggctccc 2707910
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Plus Query: 48 ttcatctccacgcttcgatccgttcgaccgtggagtttaaccggctcac 96 |||||| |||||||||||||||||| ||| | ||||||| || |||||| Sbjct: 76745 ttcatcgccacgcttcgatccgttcaacctttgagtttatcctgctcac 76793 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 ctactattcaggctacggctccc 207 ||||||||||||||||||||||| Sbjct: 76870 ctactattcaggctacggctccc 76892
>gb|BT016897.1| Zea mays clone Contig730 mRNA sequence Length = 749 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 tactattcaggctacggctcc 206 ||||||||||||||||||||| Sbjct: 396 tactattcaggctacggctcc 376
>gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, complete sequence Length = 188519 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 ataccatctgagctcattcat 52 ||||||||||||||||||||| Sbjct: 124772 ataccatctgagctcattcat 124752
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 acgcttcgatccgttcgacc 76 |||||||||||||||||||| Sbjct: 648833 acgcttcgatccgttcgacc 648852
>emb|AL117356.5|CNS01DRK Human chromosome 14 DNA sequence BAC R-606A16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178062 Score = 40.1 bits (20), Expect = 2.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 166 cttccttgtcctnctactactactatt 192 ||||||| |||| |||||||||||||| Sbjct: 48149 cttccttctcctgctactactactatt 48123 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,210,101 Number of Sequences: 3902068 Number of extensions: 1210101 Number of successful extensions: 74160 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74071 Number of HSP's gapped (non-prelim): 89 length of query: 212 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 190 effective length of database: 17,147,199,772 effective search space: 3257967956680 effective search space used: 3257967956680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
