ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1o09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480182.1| Oryza sativa (japonica cultivar-group), mRNA 268 2e-68
2dbj|AK106701.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
4dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5gb|AY109577.1| Zea mays CL37436_1 mRNA sequence 62 3e-06
6gb|AY111624.1| Zea mays CL37436_2 mRNA sequence 52 0.003
7gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 46 0.16
8emb|BX842637.1| Neurospora crassa DNA linkage group I cosmid con... 44 0.62
9gb|AC005311.3| Arabidopsis thaliana chromosome 2 clone T16B12 ma... 44 0.62
10gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map ... 44 0.62
11ref|XM_633437.1| Dictyostelium discoideum 4-galactosyl-N-acetylg... 42 2.4
12gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
13gb|AC150855.6| Bos taurus BAC CH240-472P12 (Children's Hospital... 42 2.4
14gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's ... 42 2.4
15gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, com... 42 2.4
16ref|XM_754201.1| Ustilago maydis 521 hypothetical protein (UM031... 42 2.4
17emb|AL031280.7|HS187B23 Human DNA sequence from clone RP1-187B23... 42 2.4
18gb|AC109319.17| Homo sapiens chromosome 17, clone RP11-899O23, c... 42 2.4
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
20gb|AC012321.8| Homo sapiens chromosome 16 clone RP11-311C24, com... 42 2.4
21gb|AF235093.1|AF235093 Homo sapiens chromosome 21 map 21q21 clon... 42 2.4
22dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, ... 42 2.4
23emb|AL163210.2|HS21C010 Homo sapiens chromosome 21 segment HS21C010 42 2.4
24gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
25emb|AL109762.3|HSM24152 Homo sapiens chromosome 21 sequence from... 42 2.4
26ref|XM_640347.1| Dictyostelium discoideum Ras guanine nucleotide... 40 9.7
27gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 9.7
28ref|XM_470194.1| Oryza sativa (japonica cultivar-group), predic... 40 9.7
29gb|AC165436.5| Mus musculus chromosome 1, clone RP24-81A5, compl... 40 9.7
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.7
31gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, co... 40 9.7
32emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chr... 40 9.7
33emb|Z74039.1|CEK03B8 Caenorhabditis elegans Cosmid K03B8, comple... 40 9.7
34gb|AC122692.4| Homo sapiens X BAC RP13-675A2 (Roswell Park Cance... 40 9.7
35gb|AY160107.1| Dictyostelium discoideum nucleotide exchange fact... 40 9.7
36ref|XM_671490.1| Plasmodium berghei strain ANKA cysteine proteas... 40 9.7
37gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, comp... 40 9.7
38emb|CR354558.20| Zebrafish DNA sequence from clone CH211-12A23 i... 40 9.7
39ref|XM_966243.1| PREDICTED: Tribolium castaneum similar to CG404... 40 9.7
40gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
41emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in ... 40 9.7
42emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chr... 40 9.7
43gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete se... 40 9.7
44emb|BX548158.10| Zebrafish DNA sequence from clone CH211-106G4 i... 40 9.7
45gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 40 9.7
46gb|AC084373.24| Homo sapiens 12q BAC RP11-421H10 (Roswell Park C... 40 9.7
47gb|AE010205.1| Pyrococcus furiosus DSM 3638, section 80 of 173 o... 40 9.7
48gb|AF332656.1|AF332656 Helicobacter hepaticus urease gene cluste... 40 9.7
49dbj|AK036061.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 9.7
50dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
51gb|AC154383.2| Mus musculus BAC clone RP23-38N16 from chromosome... 40 9.7
52gb|AC115682.2| Dictyostelium discoideum chromosome 2 map 4101105... 40 9.7
53emb|BX572073.5| Mouse DNA sequence from clone RP23-355J14 on chr... 40 9.7
54emb|AL808104.14| Mouse DNA sequence from clone RP23-30M20 on chr... 40 9.7
55dbj|AP002035.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.7
56dbj|AK100737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.7
57gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 40 9.7 
>ref|XM_480182.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1693

 Score =  268 bits (135), Expect = 2e-68
 Identities = 273/319 (85%)
 Strand = Plus / Minus

                                                                        
Query: 387  attgatcaatcagaatagtcttcttcactatactgccccatatcttctacatgaaaatgc 446
            |||||||| |||||||| || ||| ||||||||||  |||||||||||||  || |||||
Sbjct: 1394 attgatcagtcagaatattcgtctccactatactgatccatatcttctactcgagaatgc 1335

                                                                        
Query: 447  ctcggatgctcatcaagatcatcatcaacagaagatctttgtcgctttaaattcccaggc 506
             | ||||| ||||  |||||||||||||| ||||||||||||| ||| |||||| || ||
Sbjct: 1334 ttaggatggtcatagagatcatcatcaaccgaagatctttgtctcttcaaattctcatgc 1275

                                                                        
Query: 507  atgctggatgattctccgtgctccatctcatcaccatgtgctgtcctgctcacagtaatt 566
            ||||| || |||||||| || ||||||  | ||||||| ||||| |||||||||||||| 
Sbjct: 1274 atgctagaagattctccatgttccatcataccaccatgagctgttctgctcacagtaatc 1215

                                                                        
Query: 567  ctagaaggcactggaaaatgctcgatttcatccccagatctcccctctttagctttcttc 626
            || || |||||||| |||||||| ||||||||||||||||| || ||||| ||||| |||
Sbjct: 1214 ctggagggcactgggaaatgctcaatttcatccccagatctgccttcttttgcttttttc 1155

                                                                        
Query: 627  ttctgcaatactaatttggtaggaagaggcaaatattttgcatcatcatcatcaaatgag 686
            |||||||||||||  || |||||||||||||||||||||||| |||| |||||||||| |
Sbjct: 1154 ttctgcaatactagcttagtaggaagaggcaaatattttgcaccatcgtcatcaaatgtg 1095

                               
Query: 687  acaaggtaggtcgttggat 705
            ||||| || ||||| ||||
Sbjct: 1094 acaagatatgtcgtgggat 1076



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 268  accctgcaccctattactacttatggaggcaccaaagcaaatgcatatgagatctt 323
            |||||||||||||| || ||||||  |||||||| |||| ||  ||||||||||||
Sbjct: 1507 accctgcaccctataaccacttataaaggcaccacagcacataaatatgagatctt 1452



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Minus

                                                          
Query: 182  gtccagttacactctgccttgctttgcccactctgcacttcaaaat 227
            |||||||||||||  |||||| |||||  |||||||||||||||||
Sbjct: 1592 gtccagttacact--gccttgttttgcatactctgcacttcaaaat 1549
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>dbj|AK106701.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E03, full
            insert sequence
          Length = 1693

 Score =  268 bits (135), Expect = 2e-68
 Identities = 273/319 (85%)
 Strand = Plus / Minus

                                                                        
Query: 387  attgatcaatcagaatagtcttcttcactatactgccccatatcttctacatgaaaatgc 446
            |||||||| |||||||| || ||| ||||||||||  |||||||||||||  || |||||
Sbjct: 1394 attgatcagtcagaatattcgtctccactatactgatccatatcttctactcgagaatgc 1335

                                                                        
Query: 447  ctcggatgctcatcaagatcatcatcaacagaagatctttgtcgctttaaattcccaggc 506
             | ||||| ||||  |||||||||||||| ||||||||||||| ||| |||||| || ||
Sbjct: 1334 ttaggatggtcatagagatcatcatcaaccgaagatctttgtctcttcaaattctcatgc 1275

                                                                        
Query: 507  atgctggatgattctccgtgctccatctcatcaccatgtgctgtcctgctcacagtaatt 566
            ||||| || |||||||| || ||||||  | ||||||| ||||| |||||||||||||| 
Sbjct: 1274 atgctagaagattctccatgttccatcataccaccatgagctgttctgctcacagtaatc 1215

                                                                        
Query: 567  ctagaaggcactggaaaatgctcgatttcatccccagatctcccctctttagctttcttc 626
            || || |||||||| |||||||| ||||||||||||||||| || ||||| ||||| |||
Sbjct: 1214 ctggagggcactgggaaatgctcaatttcatccccagatctgccttcttttgcttttttc 1155

                                                                        
Query: 627  ttctgcaatactaatttggtaggaagaggcaaatattttgcatcatcatcatcaaatgag 686
            |||||||||||||  || |||||||||||||||||||||||| |||| |||||||||| |
Sbjct: 1154 ttctgcaatactagcttagtaggaagaggcaaatattttgcaccatcgtcatcaaatgtg 1095

                               
Query: 687  acaaggtaggtcgttggat 705
            ||||| || ||||| ||||
Sbjct: 1094 acaagatatgtcgtgggat 1076



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 268  accctgcaccctattactacttatggaggcaccaaagcaaatgcatatgagatctt 323
            |||||||||||||| || ||||||  |||||||| |||| ||  ||||||||||||
Sbjct: 1507 accctgcaccctataaccacttataaaggcaccacagcacataaatatgagatctt 1452



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Minus

                                                          
Query: 182  gtccagttacactctgccttgctttgcccactctgcacttcaaaat 227
            |||||||||||||  |||||| |||||  |||||||||||||||||
Sbjct: 1592 gtccagttacact--gccttgttttgcatactctgcacttcaaaat 1549
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                           
Query: 505     gcatgctggatgattctccgtgctccatctcatcaccatgtgctgtcctgctcacagtaa 564
               ||||||| || |||||||| || ||||||  | ||||||| ||||| |||||||||||||
Sbjct: 3307815 gcatgctagaagattctccatgttccatcataccaccatgagctgttctgctcacagtaa 3307874

                                                                           
Query: 565     ttctagaaggcactggaaaatgctcgatttcatccccagatctcccctctttagctttct 624
               | || || |||||||| |||||||| ||||||||||||||||| || ||||| ||||| |
Sbjct: 3307875 tcctggagggcactgggaaatgctcaatttcatccccagatctgccttcttttgcttttt 3307934

                                               
Query: 625     tcttctgcaatactaatttggtaggaagaggc 656
               |||||||||||||||  || ||||||||||||
Sbjct: 3307935 tcttctgcaatactagcttagtaggaagaggc 3307966



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 97/114 (85%)
 Strand = Plus / Plus

                                                                           
Query: 387     attgatcaatcagaatagtcttcttcactatactgccccatatcttctacatgaaaatgc 446
               |||||||| |||||||| || ||| ||||||||||  |||||||||||||  || |||||
Sbjct: 3307201 attgatcagtcagaatattcgtctccactatactgatccatatcttctactcgagaatgc 3307260

                                                                     
Query: 447     ctcggatgctcatcaagatcatcatcaacagaagatctttgtcgctttaaattc 500
                | ||||| ||||  |||||||||||||| ||||||||||||| ||| ||||||
Sbjct: 3307261 ttaggatggtcatagagatcatcatcaaccgaagatctttgtctcttcaaattc 3307314



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 656     caaatattttgcatcatcatcatcaaatgagacaaggtaggtcgttggat 705
               ||||||||||||| |||| |||||||||| |||||| || ||||| ||||
Sbjct: 3308061 caaatattttgcaccatcgtcatcaaatgtgacaagatatgtcgtgggat 3308110



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                       
Query: 268     accctgcaccctattactacttatggaggcaccaaagcaaatgcatatgagatctt 323
               |||||||||||||| || ||||||  |||||||| |||| ||  ||||||||||||
Sbjct: 3307088 accctgcaccctataaccacttataaaggcaccacagcacataaatatgagatctt 3307143



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Plus

                                                             
Query: 182     gtccagttacactctgccttgctttgcccactctgcacttcaaaat 227
               |||||||||||||  |||||| |||||  |||||||||||||||||
Sbjct: 3307003 gtccagttacact--gccttgttttgcatactctgcacttcaaaat 3307046
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>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0438H08
          Length = 148626

 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                         
Query: 505   gcatgctggatgattctccgtgctccatctcatcaccatgtgctgtcctgctcacagtaa 564
             ||||||| || |||||||| || ||||||  | ||||||| ||||| |||||||||||||
Sbjct: 85382 gcatgctagaagattctccatgttccatcataccaccatgagctgttctgctcacagtaa 85441

                                                                         
Query: 565   ttctagaaggcactggaaaatgctcgatttcatccccagatctcccctctttagctttct 624
             | || || |||||||| |||||||| ||||||||||||||||| || ||||| ||||| |
Sbjct: 85442 tcctggagggcactgggaaatgctcaatttcatccccagatctgccttcttttgcttttt 85501

                                             
Query: 625   tcttctgcaatactaatttggtaggaagaggc 656
             |||||||||||||||  || ||||||||||||
Sbjct: 85502 tcttctgcaatactagcttagtaggaagaggc 85533



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 97/114 (85%)
 Strand = Plus / Plus

                                                                         
Query: 387   attgatcaatcagaatagtcttcttcactatactgccccatatcttctacatgaaaatgc 446
             |||||||| |||||||| || ||| ||||||||||  |||||||||||||  || |||||
Sbjct: 84768 attgatcagtcagaatattcgtctccactatactgatccatatcttctactcgagaatgc 84827

                                                                   
Query: 447   ctcggatgctcatcaagatcatcatcaacagaagatctttgtcgctttaaattc 500
              | ||||| ||||  |||||||||||||| ||||||||||||| ||| ||||||
Sbjct: 84828 ttaggatggtcatagagatcatcatcaaccgaagatctttgtctcttcaaattc 84881



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 656   caaatattttgcatcatcatcatcaaatgagacaaggtaggtcgttggat 705
             ||||||||||||| |||| |||||||||| |||||| || ||||| ||||
Sbjct: 85628 caaatattttgcaccatcgtcatcaaatgtgacaagatatgtcgtgggat 85677



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 268   accctgcaccctattactacttatggaggcaccaaagcaaatgcatatgagatctt 323
             |||||||||||||| || ||||||  |||||||| |||| ||  ||||||||||||
Sbjct: 84655 accctgcaccctataaccacttataaaggcaccacagcacataaatatgagatctt 84710



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Plus

                                                           
Query: 182   gtccagttacactctgccttgctttgcccactctgcacttcaaaat 227
             |||||||||||||  |||||| |||||  |||||||||||||||||
Sbjct: 84570 gtccagttacact--gccttgttttgcatactctgcacttcaaaat 84613
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>gb|AY109577.1| Zea mays CL37436_1 mRNA sequence
          Length = 1058

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 450 ggatgctcatcaagatcatcatcaacagaagatctttgtcgctttaaattc 500
           |||||||||||||||||||||||||||  ||||||| || ||||| |||||
Sbjct: 367 ggatgctcatcaagatcatcatcaacatgagatcttcgtggctttgaattc 417



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 642 ttggtaggaagaggcaaatattttgcatcatc 673
           ||||||||||||||||||||||||||| ||||
Sbjct: 559 ttggtaggaagaggcaaatattttgcaccatc 590



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                       
Query: 516 gattctccgtgctccatctcatcaccatgtgctgtcctgctcacagtaattctagaaggc 575
           ||||||||| |||||||   | ||||||| |||||  | |||||||| || |  ||||| 
Sbjct: 433 gattctccgcgctccatggtaccaccatgagctgttttactcacagtgatacgggaaggt 492

                                       
Query: 576 actggaaaatgctcgatttcatccccag 603
           ||||||||||| ||||||||||| ||||
Sbjct: 493 actggaaaatgttcgatttcatctccag 520
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>gb|AY111624.1| Zea mays CL37436_2 mRNA sequence
          Length = 635

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 570 gaaggcactggaaaatgctcgatttcatccccag 603
           ||||| |||||||||||||| |||||||||||||
Sbjct: 512 gaaggtactggaaaatgctcaatttcatccccag 545



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 645 gtaggaagaggcaaatattttgca 668
           ||||| ||||||||||||||||||
Sbjct: 587 gtagggagaggcaaatattttgca 610
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>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 657    aaatattttgcatcatcatcatc 679
              |||||||||||||||||||||||
Sbjct: 172156 aaatattttgcatcatcatcatc 172178
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>emb|BX842637.1| Neurospora crassa DNA linkage group I cosmid contig 5C2
          Length = 98769

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 660   tattttgcatcatcatcatcaa 681
             ||||||||||||||||||||||
Sbjct: 60223 tattttgcatcatcatcatcaa 60202
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>gb|AC005311.3| Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete
             sequence
          Length = 82594

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 660   tattttgcatcatcatcatcaa 681
             ||||||||||||||||||||||
Sbjct: 78103 tattttgcatcatcatcatcaa 78124
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>gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map m283, complete
             sequence
          Length = 89779

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 660   tattttgcatcatcatcatcaa 681
             ||||||||||||||||||||||
Sbjct: 85549 tattttgcatcatcatcatcaa 85528
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>ref|XM_633437.1| Dictyostelium discoideum 4-galactosyl-N-acetylglucosaminide
           3-alpha-L-fucosyltransferase (DDB0230989), partial mRNA
          Length = 1398

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 663 tttgcatcatcatcatcaaat 683
           |||||||||||||||||||||
Sbjct: 116 tttgcatcatcatcatcaaat 96
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 659   atattttgcatcatcatcatc 679
             |||||||||||||||||||||
Sbjct: 72907 atattttgcatcatcatcatc 72927
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>gb|AC150855.6| Bos taurus  BAC CH240-472P12 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 168955

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 644   ggtaggaagaggcaaatattttgca 668
             |||||| ||||||||||||||||||
Sbjct: 36398 ggtagggagaggcaaatattttgca 36422
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>gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 236662

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 667   catcatcatcatcaaatgaga 687
             |||||||||||||||||||||
Sbjct: 90225 catcatcatcatcaaatgaga 90245
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>gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, complete sequence
          Length = 241579

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 667    catcatcatcatcaaatgagacaaggtag 695
              ||||||||||||||| ||||||| |||||
Sbjct: 147144 catcatcatcatcaattgagacagggtag 147172



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    tcttcttcactatactgccc 424
              ||||||||||||||||||||
Sbjct: 171932 tcttcttcactatactgccc 171913
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>ref|XM_754201.1| Ustilago maydis 521 hypothetical protein (UM03147.1) partial mRNA
          Length = 2724

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 450 ggatgctcatcaagatcatca 470
           |||||||||||||||||||||
Sbjct: 674 ggatgctcatcaagatcatca 694
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>emb|AL031280.7|HS187B23 Human DNA sequence from clone RP1-187B23 on chromosome 1p35.1-36.13
            Contains the 5' end of the MAN1C1 gene for mannosidase
            alpha class 1C member 1, a novel gene and a CPG island,
            complete sequence
          Length = 129120

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 667  catcatcatcatcaaatgaga 687
            |||||||||||||||||||||
Sbjct: 7933 catcatcatcatcaaatgaga 7913
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>gb|AC109319.17| Homo sapiens chromosome 17, clone RP11-899O23, complete sequence
          Length = 99701

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 193   ctctgccttgctttgcccactctgc 217
             |||||||| ||||||||||||||||
Sbjct: 38680 ctctgcctggctttgcccactctgc 38656
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 659     atattttgcatcatcatcatc 679
               |||||||||||||||||||||
Sbjct: 7613821 atattttgcatcatcatcatc 7613841
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>gb|AC012321.8| Homo sapiens chromosome 16 clone RP11-311C24, complete sequence
          Length = 131694

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 667   catcatcatcatcaaatgaga 687
             |||||||||||||||||||||
Sbjct: 49962 catcatcatcatcaaatgaga 49982
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>gb|AF235093.1|AF235093 Homo sapiens chromosome 21 map 21q21 clone PAC P704-39J11, complete
              sequence
          Length = 161121

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    ttaaagtccagttacactctg 197
              |||||||||||||||||||||
Sbjct: 124677 ttaaagtccagttacactctg 124657
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>dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, map 22, complete
              sequences
          Length = 214189

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    ttaaagtccagttacactctg 197
              |||||||||||||||||||||
Sbjct: 159261 ttaaagtccagttacactctg 159241
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>emb|AL163210.2|HS21C010 Homo sapiens chromosome 21 segment HS21C010
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    ttaaagtccagttacactctg 197
              |||||||||||||||||||||
Sbjct: 328434 ttaaagtccagttacactctg 328414
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 659     atattttgcatcatcatcatc 679
               |||||||||||||||||||||
Sbjct: 7683908 atattttgcatcatcatcatc 7683928
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>emb|AL109762.3|HSM24152 Homo sapiens chromosome 21 sequence from PAC RPCI-1 152M24 map 21q21
             region D21S189-LA297, complete sequence
          Length = 116137

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   ttaaagtccagttacactctg 197
             |||||||||||||||||||||
Sbjct: 86216 ttaaagtccagttacactctg 86196
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>ref|XM_640347.1| Dictyostelium discoideum Ras guanine nucleotide exchange factor
           (DDB0191324), partial mRNA
          Length = 3132

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 457 catcaagatcatcatcaacagaag 480
           ||||||||||||||| ||||||||
Sbjct: 683 catcaagatcatcattaacagaag 706
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    tcatcaagatcatcatcaac 475
              ||||||||||||||||||||
Sbjct: 959954 tcatcaagatcatcatcaac 959935
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>ref|XM_470194.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1869

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  gctcatcaagatcatcatca 473
            ||||||||||||||||||||
Sbjct: 1807 gctcatcaagatcatcatca 1788
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>gb|AC165436.5| Mus musculus chromosome 1, clone RP24-81A5, complete sequence
          Length = 186089

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    tcttcttcactatactgccc 424
              ||||||||||||||||||||
Sbjct: 185587 tcttcttcactatactgccc 185606
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     gctcatcaagatcatcatca 473
               ||||||||||||||||||||
Sbjct: 1937714 gctcatcaagatcatcatca 1937733
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>gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, complete sequence
          Length = 196738

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 657    aaatattttgcatcatcatcatca 680
              ||||||||| ||||||||||||||
Sbjct: 108736 aaatatttttcatcatcatcatca 108759
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>emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chromosome 16, complete
              sequence
          Length = 230233

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    aaagcaaatgcatatgagat 320
              ||||||||||||||||||||
Sbjct: 126564 aaagcaaatgcatatgagat 126545
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>emb|Z74039.1|CEK03B8 Caenorhabditis elegans Cosmid K03B8, complete sequence
          Length = 29132

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 681   aatgagacaaggtaggtcgt 700
             ||||||||||||||||||||
Sbjct: 26918 aatgagacaaggtaggtcgt 26899
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>gb|AC122692.4| Homo sapiens X BAC RP13-675A2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 102257

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 553   tgctcacagtaattctagaaggca 576
             ||||||||| ||||||||||||||
Sbjct: 56580 tgctcacaggaattctagaaggca 56603
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>gb|AY160107.1| Dictyostelium discoideum nucleotide exchange factor RasGEF S (gefS)
            gene, complete cds
          Length = 6273

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 457  catcaagatcatcatcaacagaag 480
            ||||||||||||||| ||||||||
Sbjct: 2960 catcaagatcatcattaacagaag 2983
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>ref|XM_671490.1| Plasmodium berghei strain ANKA cysteine protease (PB000352.01.0)
            partial mRNA
          Length = 2490

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 653  aggcaaatattttgcatcat 672
            ||||||||||||||||||||
Sbjct: 1449 aggcaaatattttgcatcat 1430
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>gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, complete sequence
          Length = 202195

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   aaagcaaatgcatatgagat 320
             ||||||||||||||||||||
Sbjct: 90135 aaagcaaatgcatatgagat 90154
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>emb|CR354558.20| Zebrafish DNA sequence from clone CH211-12A23 in linkage group 8,
              complete sequence
          Length = 177206

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 668    atcatcatcatcaaatgaga 687
              ||||||||||||||||||||
Sbjct: 107746 atcatcatcatcaaatgaga 107765
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>ref|XM_966243.1| PREDICTED: Tribolium castaneum similar to CG4040-PA (LOC659979),
          mRNA
          Length = 2733

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 51 aaacagcagtggagaatcac 70
          ||||||||||||||||||||
Sbjct: 28 aaacagcagtggagaatcac 47
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>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
             complete sequence
          Length = 122218

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gctcatcaagatcatcatca 473
             ||||||||||||||||||||
Sbjct: 37697 gctcatcaagatcatcatca 37678
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>emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in linkage group 8,
            complete sequence
          Length = 147399

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 668  atcatcatcatcaaatgaga 687
            ||||||||||||||||||||
Sbjct: 3526 atcatcatcatcaaatgaga 3545
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>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes,
             complete sequence
          Length = 216199

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   gtcttcttcactatactgcc 423
             ||||||||||||||||||||
Sbjct: 58968 gtcttcttcactatactgcc 58949
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>gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete sequence
          Length = 141135

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ctatatcatcaaaacagcag 59
              ||||||||||||||||||||
Sbjct: 111356 ctatatcatcaaaacagcag 111337
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>emb|BX548158.10| Zebrafish DNA sequence from clone CH211-106G4 in linkage group 8,
              complete sequence
          Length = 190936

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 668    atcatcatcatcaaatgaga 687
              ||||||||||||||||||||
Sbjct: 110374 atcatcatcatcaaatgaga 110355
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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    gccttgctttgcccactctg 216
              ||||||||||||||||||||
Sbjct: 211817 gccttgctttgcccactctg 211836
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>gb|AC084373.24| Homo sapiens 12q BAC RP11-421H10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 184876

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 450   ggatgctcatcaagatcatc 469
             ||||||||||||||||||||
Sbjct: 50583 ggatgctcatcaagatcatc 50564
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>gb|AE010205.1| Pyrococcus furiosus DSM 3638, section 80 of 173 of the complete genome
          Length = 10560

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   catatgtggccatgaaattc 351
             ||||||||||||||||||||
Sbjct: 10388 catatgtggccatgaaattc 10407
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>gb|AF332656.1|AF332656 Helicobacter hepaticus urease gene cluster, complete cds
          Length = 6126

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 650  aagaggcaaatattttgcat 669
            ||||||||||||||||||||
Sbjct: 5584 aagaggcaaatattttgcat 5565
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>dbj|AK036061.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630031L23
            product:unclassifiable, full insert sequence
          Length = 1486

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 657  aaatattttgcatcatcatcatca 680
            ||||||||| ||||||||||||||
Sbjct: 1216 aaatatttttcatcatcatcatca 1193
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     gctcatcaagatcatcatca 473
               ||||||||||||||||||||
Sbjct: 1937712 gctcatcaagatcatcatca 1937731
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>gb|AC154383.2| Mus musculus BAC clone RP23-38N16 from chromosome 16, complete sequence
          Length = 205926

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    ctctgccttgctttgcccac 212
              ||||||||||||||||||||
Sbjct: 110604 ctctgccttgctttgcccac 110623
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>gb|AC115682.2| Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4,
             complete sequence
          Length = 57538

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 457   catcaagatcatcatcaacagaag 480
             ||||||||||||||| ||||||||
Sbjct: 35598 catcaagatcatcattaacagaag 35621
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>emb|BX572073.5| Mouse DNA sequence from clone RP23-355J14 on chromosome X, complete
             sequence
          Length = 67137

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   agaaggcactggaaaatgct 588
             ||||||||||||||||||||
Sbjct: 21760 agaaggcactggaaaatgct 21741
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>emb|AL808104.14| Mouse DNA sequence from clone RP23-30M20 on chromosome 2, complete
             sequence
          Length = 199494

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 57    cagtggagaatcactcccaagnactacagag 87
             |||||||||||||||||| || | |||||||
Sbjct: 69079 cagtggagaatcactccccagtattacagag 69109
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>dbj|AP002035.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F6H5
          Length = 95681

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 663   tttgcatcatcatcatcaaa 682
             ||||||||||||||||||||
Sbjct: 50601 tttgcatcatcatcatcaaa 50582
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>dbj|AK100737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118C14, full
            insert sequence
          Length = 2292

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  gctcatcaagatcatcatca 473
            ||||||||||||||||||||
Sbjct: 1888 gctcatcaagatcatcatca 1869
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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 650    aagaggcaaatattttgcat 669
              ||||||||||||||||||||
Sbjct: 397220 aagaggcaaatattttgcat 397201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,694,310
Number of Sequences: 3902068
Number of extensions: 7694310
Number of successful extensions: 262630
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 262075
Number of HSP's gapped (non-prelim): 555
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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