ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1o08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 224 2e-55
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
3dbj|AK071810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 224 2e-55
5gb|AY109979.1| Zea mays CL11737_1 mRNA sequence 123 6e-25
6gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Can... 42 1.7
7gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana... 42 1.7
8gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Ca... 42 1.7
9dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.7
10gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, com... 40 6.6
11gb|AC115867.12| Mus musculus chromosome 6, clone RP24-326P23, co... 40 6.6
12gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complet... 40 6.6
13gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosom... 40 6.6
14emb|AL354936.21| Human DNA sequence from clone RP11-374A22 on ch... 40 6.6
15gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome... 40 6.6
16emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 i... 40 6.6
17gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cance... 40 6.6
18gb|AC112221.2| Homo sapiens chromosome 3 clone RP11-11C8, comple... 40 6.6
19emb|AL954709.15| Zebrafish DNA sequence from clone CH211-142N21 ... 40 6.6
20gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 m... 40 6.6 
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score =  224 bits (113), Expect = 2e-55
 Identities = 209/241 (86%)
 Strand = Plus / Minus

                                                                         
Query: 248   aaatatatttcatcccagcaattcttatccgccttgatatcaggtactgtgctagagaat 307
             |||| |||||||||||||||| |||||||||||||||||| |  ||||||| ||||||||
Sbjct: 85214 aaatgtatttcatcccagcaagtcttatccgccttgatataacatactgtgatagagaat 85155

                                                                         
Query: 308   agatagctcccaacagccctaaaacccgcacagaaagtacatctgtcattataatcgatg 367
             | ||||| || ||||| ||||  |||||||||| |||||  |||||||||||||| || |
Sbjct: 85154 aaatagcacctaacagtcctagtacccgcacagtaagtatgtctgtcattataattgacg 85095

                                                                         
Query: 368   gcaggttgagaggcagtgtcagaagtagcttcgagtcggtctgcctgacatagtcccaca 427
             ||| |||||| ||||| ||||||||||||||||  || |||||||||||||| |||||||
Sbjct: 85094 gcaagttgaggggcagcgtcagaagtagcttcgcatctgtctgcctgacataatcccaca 85035

                                                                         
Query: 428   tgaaccgattgaagagtatgtgattgggtagcgtgagcacgagaagagcaacatttttca 487
             |||| |||||||||||||||||||| ||||  || | || |||||| |||||||||||||
Sbjct: 85034 tgaagcgattgaagagtatgtgattaggtaatgtcatcatgagaagggcaacatttttca 84975

              
Query: 488   c 488
             |
Sbjct: 84974 c 84974
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  224 bits (113), Expect = 2e-55
 Identities = 209/241 (86%)
 Strand = Plus / Minus

                                                                            
Query: 248      aaatatatttcatcccagcaattcttatccgccttgatatcaggtactgtgctagagaat 307
                |||| |||||||||||||||| |||||||||||||||||| |  ||||||| ||||||||
Sbjct: 18505899 aaatgtatttcatcccagcaagtcttatccgccttgatataacatactgtgatagagaat 18505840

                                                                            
Query: 308      agatagctcccaacagccctaaaacccgcacagaaagtacatctgtcattataatcgatg 367
                | ||||| || ||||| ||||  |||||||||| |||||  |||||||||||||| || |
Sbjct: 18505839 aaatagcacctaacagtcctagtacccgcacagtaagtatgtctgtcattataattgacg 18505780

                                                                            
Query: 368      gcaggttgagaggcagtgtcagaagtagcttcgagtcggtctgcctgacatagtcccaca 427
                ||| |||||| ||||| ||||||||||||||||  || |||||||||||||| |||||||
Sbjct: 18505779 gcaagttgaggggcagcgtcagaagtagcttcgcatctgtctgcctgacataatcccaca 18505720

                                                                            
Query: 428      tgaaccgattgaagagtatgtgattgggtagcgtgagcacgagaagagcaacatttttca 487
                |||| |||||||||||||||||||| ||||  || | || |||||| |||||||||||||
Sbjct: 18505719 tgaagcgattgaagagtatgtgattaggtaatgtcatcatgagaagggcaacatttttca 18505660

                 
Query: 488      c 488
                |
Sbjct: 18505659 c 18505659
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>dbj|AK071810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114H02, full
            insert sequence
          Length = 1843

 Score =  224 bits (113), Expect = 2e-55
 Identities = 209/241 (86%)
 Strand = Plus / Minus

                                                                        
Query: 248  aaatatatttcatcccagcaattcttatccgccttgatatcaggtactgtgctagagaat 307
            |||| |||||||||||||||| |||||||||||||||||| |  ||||||| ||||||||
Sbjct: 1034 aaatgtatttcatcccagcaagtcttatccgccttgatataacatactgtgatagagaat 975

                                                                        
Query: 308  agatagctcccaacagccctaaaacccgcacagaaagtacatctgtcattataatcgatg 367
            | ||||| || ||||| ||||  |||||||||| |||||  |||||||||||||| || |
Sbjct: 974  aaatagcacctaacagtcctagtacccgcacagtaagtatgtctgtcattataattgacg 915

                                                                        
Query: 368  gcaggttgagaggcagtgtcagaagtagcttcgagtcggtctgcctgacatagtcccaca 427
            ||| |||||| ||||| ||||||||||||||||  || |||||||||||||| |||||||
Sbjct: 914  gcaagttgaggggcagcgtcagaagtagcttcgcatctgtctgcctgacataatcccaca 855

                                                                        
Query: 428  tgaaccgattgaagagtatgtgattgggtagcgtgagcacgagaagagcaacatttttca 487
            |||| |||||||||||||||||||| ||||  || | || |||||| |||||||||||||
Sbjct: 854  tgaagcgattgaagagtatgtgattaggtaatgtcatcatgagaagggcaacatttttca 795

             
Query: 488  c 488
            |
Sbjct: 794  c 794
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  224 bits (113), Expect = 2e-55
 Identities = 209/241 (86%)
 Strand = Plus / Minus

                                                                            
Query: 248      aaatatatttcatcccagcaattcttatccgccttgatatcaggtactgtgctagagaat 307
                |||| |||||||||||||||| |||||||||||||||||| |  ||||||| ||||||||
Sbjct: 18665300 aaatgtatttcatcccagcaagtcttatccgccttgatataacatactgtgatagagaat 18665241

                                                                            
Query: 308      agatagctcccaacagccctaaaacccgcacagaaagtacatctgtcattataatcgatg 367
                | ||||| || ||||| ||||  |||||||||| |||||  |||||||||||||| || |
Sbjct: 18665240 aaatagcacctaacagtcctagtacccgcacagtaagtatgtctgtcattataattgacg 18665181

                                                                            
Query: 368      gcaggttgagaggcagtgtcagaagtagcttcgagtcggtctgcctgacatagtcccaca 427
                ||| |||||| ||||| ||||||||||||||||  || |||||||||||||| |||||||
Sbjct: 18665180 gcaagttgaggggcagcgtcagaagtagcttcgcatctgtctgcctgacataatcccaca 18665121

                                                                            
Query: 428      tgaaccgattgaagagtatgtgattgggtagcgtgagcacgagaagagcaacatttttca 487
                |||| |||||||||||||||||||| ||||  || | || |||||| |||||||||||||
Sbjct: 18665120 tgaagcgattgaagagtatgtgattaggtaatgtcatcatgagaagggcaacatttttca 18665061

                 
Query: 488      c 488
                |
Sbjct: 18665060 c 18665060
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>gb|AY109979.1| Zea mays CL11737_1 mRNA sequence
          Length = 629

 Score =  123 bits (62), Expect = 6e-25
 Identities = 131/154 (85%)
 Strand = Plus / Plus

                                                                       
Query: 245 ttcaaatatatttcatcccagcaattcttatccgccttgatatcaggtactgtgctagag 304
           ||||||| ||| ||||||||||||||||||| ||||||||||||| |||||| || ||||
Sbjct: 347 ttcaaatgtatctcatcccagcaattcttatacgccttgatatcatgtactgggcaagag 406

                                                                       
Query: 305 aatagatagctcccaacagccctaaaacccgcacagaaagtacatctgtcattataatcg 364
           | || |||||||| | ||  ||||| ||||| | || |||||  ||||||||||||||||
Sbjct: 407 agtacatagctcctagcaatcctaacacccgaatagtaagtatgtctgtcattataatcg 466

                                             
Query: 365 atggcaggttgagaggcagtgtcagaagtagctt 398
           | |||| ||||||||| || ||||| ||||||||
Sbjct: 467 aaggcaagttgagaggtagcgtcagcagtagctt 500



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                       
Query: 415 acatagtcccacatgaaccgattgaagagtatgtgattgggtagcgtgagcacgagaaga 474
           ||||| ||||||||||| || ||||||||||||||||  || |  |||||||| ||||||
Sbjct: 517 acataatcccacatgaagcggttgaagagtatgtgatccggcaaagtgagcacaagaaga 576

               
Query: 475 gcaa 478
           ||||
Sbjct: 577 gcaa 580
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>gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165139

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   atctgcttcaggaagttgaag 197
             |||||||||||||||||||||
Sbjct: 50632 atctgcttcaggaagttgaag 50652
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>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
             complete sequence
          Length = 86801

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   attgtttctctgattctctct 167
             |||||||||||||||||||||
Sbjct: 77374 attgtttctctgattctctct 77354
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>gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152358

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    atctgcttcaggaagttgaag 197
              |||||||||||||||||||||
Sbjct: 139502 atctgcttcaggaagttgaag 139522
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>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete
             sequence
          Length = 177882

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 49    tgatgcattttatgtcctgtgcaaa 73
             |||||||| ||||||||||||||||
Sbjct: 87255 tgatgcatcttatgtcctgtgcaaa 87279
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>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence
          Length = 129417

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   tatcaggtactgtgctagag 304
             ||||||||||||||||||||
Sbjct: 90824 tatcaggtactgtgctagag 90843
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>gb|AC115867.12| Mus musculus chromosome 6, clone RP24-326P23, complete sequence
          Length = 162067

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     acatctacagtacaacacct 93
              ||||||||||||||||||||
Sbjct: 123016 acatctacagtacaacacct 123035
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>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence
          Length = 148915

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tatcaggtactgtgctagag 304
              ||||||||||||||||||||
Sbjct: 108625 tatcaggtactgtgctagag 108644
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>gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosome 15, complete sequence
          Length = 229480

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 234    ttcctcaaaacttcaaatatattt 257
              |||||||||||||||||| |||||
Sbjct: 128362 ttcctcaaaacttcaaatttattt 128339
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>emb|AL354936.21| Human DNA sequence from clone RP11-374A22 on chromosome 6 Contains a
             novel gene, the 5' end of the TCBA1 gene for T-cell
             lymphoma breakpoint associated target 1 and a CpG island,
             complete sequence
          Length = 161618

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   gaagagcaacatttttcacc 489
             ||||||||||||||||||||
Sbjct: 76465 gaagagcaacatttttcacc 76484
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>gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome 6, complete sequence
          Length = 212096

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     acatctacagtacaacacct 93
              ||||||||||||||||||||
Sbjct: 103977 acatctacagtacaacacct 103996
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>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
             complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    caaaacatctacagtacaac 89
             ||||||||||||||||||||
Sbjct: 30021 caaaacatctacagtacaac 30040
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>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   agatagctcccaacagccct 327
             ||||||||||||||||||||
Sbjct: 66471 agatagctcccaacagccct 66452
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>gb|AC112221.2| Homo sapiens chromosome 3 clone RP11-11C8, complete sequence
          Length = 151382

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   gcagtgtcagaagtagcttc 399
             ||||||||||||||||||||
Sbjct: 75126 gcagtgtcagaagtagcttc 75145
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>emb|AL954709.15| Zebrafish DNA sequence from clone CH211-142N21 in linkage group 7,
              complete sequence
          Length = 162309

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 242    aacttcaaatatatttcatcccagcaat 269
              |||||||||||||||||||  |||||||
Sbjct: 117244 aacttcaaatatatttcattacagcaat 117217
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>gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 map 15, complete
             sequence
          Length = 177864

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gatcatccagtacaaaagtg 133
             ||||||||||||||||||||
Sbjct: 69138 gatcatccagtacaaaagtg 69157


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,148,329
Number of Sequences: 3902068
Number of extensions: 4148329
Number of successful extensions: 80518
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80438
Number of HSP's gapped (non-prelim): 80
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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