ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1n06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479151.1| Oryza sativa (japonica cultivar-group), mRNA 196 6e-47
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
3dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
4dbj|AK111336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
5gb|AY104391.1| Zea mays PCO073745 mRNA sequence 139 1e-29
6gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom... 92 3e-15
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 92 3e-15
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
9dbj|AK062571.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
10emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L... 46 0.14
11gb|AF419981.1|AF419981 Drosophila yakuba defective chorion-1 fc1... 44 0.54
12gb|AF419980.1|AF419980 Drosophila yakuba defective chorion-1 fc1... 44 0.54
13gb|AF419979.1|AF419979 Drosophila yakuba defective chorion-1 fc1... 44 0.54
14emb|CR407598.24| Zebrafish DNA sequence from clone CH211-141I4 i... 44 0.54
15emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 i... 42 2.1
16ref|XM_677758.1| PREDICTED: Danio rerio similar to trinucleotide... 42 2.1
17gb|AY702083.1| Oikopleura dioica homeodomain protein NK2a (NK2a)... 42 2.1
18gb|AF154094.1| Uncultured hydrocarbon seep bacterium BPC065 16S ... 40 8.4
19gb|AY484743.1| Uncultured bacterium clone 99917 16S ribosomal RN... 40 8.4
20gb|AC122332.4| Mus musculus BAC clone RP23-346G14 from chromosom... 40 8.4
21gb|AC123041.2| Mus musculus BAC clone RP24-545E4 from 3, complet... 40 8.4
22gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, com... 40 8.4
23gb|CP000088.1| Thermobifida fusca YX, complete genome 40 8.4
24emb|AL589744.18| Mouse DNA sequence from clone RP23-80C18 on chr... 40 8.4
25gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, co... 40 8.4
26gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, comple... 40 8.4
27gb|DQ394922.1| Uncultured bacterium clone VHS-B1-47 16S ribosoma... 40 8.4
28gb|DQ394901.1| Uncultured delta proteobacterium clone VHS-B1-26 ... 40 8.4
29gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, co... 40 8.4
30gb|AC090763.7| Homo sapiens chromosome 15, clone RP11-408F10, co... 40 8.4
31gb|AC083814.17|AC083814 Mus musculus 7 BAC RP23-129J16 (Roswell ... 40 8.4
32gb|AC080015.15|AC080015 Mus musculus 7 BAC RP23-163B17 (RPCI Mou... 40 8.4
33emb|AJ582703.1|UDE582703 Uncultured Desulfobacteraceae bacterium... 40 8.4
34gb|AE000657.1| Aquifex aeolicus VF5, complete genome 40 8.4
35gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome... 40 8.4 
>ref|XM_479151.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1362

 Score =  196 bits (99), Expect = 6e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                        
Query: 221  cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 280
            |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 1041 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 982

                                                                        
Query: 281  atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 340
            |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 981  atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 922

                                                                        
Query: 341  aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 400
            |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 921  aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 862

                                                           
Query: 401  agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 447
            || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 861  agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 815



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 512 ttgtgtcctttcggtttctgcttgactttttgtgctgc 549
           ||||| |||||| ||||||||||||| |||||||||||
Sbjct: 750 ttgtgacctttcagtttctgcttgaccttttgtgctgc 713



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 560 gtttgaagtacaaccatgcttgtgtactctgaa 592
           ||||||||||  |||||||| ||||||||||||
Sbjct: 696 gtttgaagtaggaccatgctcgtgtactctgaa 664
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  196 bits (99), Expect = 6e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                            
Query: 221      cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 280
                |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 25251774 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 25251715

                                                                            
Query: 281      atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 340
                |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 25251714 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 25251655

                                                                            
Query: 341      aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 400
                |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 25251654 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 25251595

                                                               
Query: 401      agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 447
                || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 25251594 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 25251548



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 560      gtttgaagtacaaccatgcttgtgtactctgaa 592
                ||||||||||  |||||||| ||||||||||||
Sbjct: 25251303 gtttgaagtaggaccatgctcgtgtactctgaa 25251271
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>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0616D06
          Length = 153800

 Score =  196 bits (99), Expect = 6e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                         
Query: 221   cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 280
             |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 68445 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 68386

                                                                         
Query: 281   atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 340
             |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 68385 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 68326

                                                                         
Query: 341   aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 400
             |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 68325 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 68266

                                                            
Query: 401   agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 447
             || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 68265 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 68219



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 560   gtttgaagtacaaccatgcttgtgtactctgaa 592
             ||||||||||  |||||||| ||||||||||||
Sbjct: 67974 gtttgaagtaggaccatgctcgtgtactctgaa 67942
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>dbj|AK111336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F03, full
            insert sequence
          Length = 1362

 Score =  196 bits (99), Expect = 6e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                        
Query: 221  cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 280
            |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 1041 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 982

                                                                        
Query: 281  atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 340
            |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 981  atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 922

                                                                        
Query: 341  aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 400
            |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 921  aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 862

                                                           
Query: 401  agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 447
            || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 861  agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 815



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 512 ttgtgtcctttcggtttctgcttgactttttgtgctgc 549
           ||||| |||||| ||||||||||||| |||||||||||
Sbjct: 750 ttgtgacctttcagtttctgcttgaccttttgtgctgc 713



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 560 gtttgaagtacaaccatgcttgtgtactctgaa 592
           ||||||||||  |||||||| ||||||||||||
Sbjct: 696 gtttgaagtaggaccatgctcgtgtactctgaa 664
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>gb|AY104391.1| Zea mays PCO073745 mRNA sequence
          Length = 1301

 Score =  139 bits (70), Expect = 1e-29
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                        
Query: 233  cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 292
            ||||||||| |||| || ||||||| ||  ||||||||| |||||||||| | |||||||
Sbjct: 1075 cagcactcgaagcatcccaggcacgcgatggcggcgcaggcctgcgccatgacgatggcg 1016

                                                                        
Query: 293  cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 352
            ||||||||||||||| || |||||||||||||| ||||||||||||||  ||||||||| 
Sbjct: 1015 cactggtcgttcatcttgctgcacgccttgatgaagcacatgcagcagcagcagtccgcc 956

                          
Query: 353  acgcggctgcagca 366
            | ||||||||||||
Sbjct: 955  atgcggctgcagca 942



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 558 tggtttgaagtacaaccatgcttgtgtactctgaaagaacactattctctatgctta 614
           ||||||||||||  ||||||| ||||||||| ||| |||  ||||| | ||||||||
Sbjct: 738 tggtttgaagtagtaccatgcgtgtgtactcagaaggaaggctattttgtatgctta 682
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>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete
             sequence
          Length = 145714

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Minus

                                                                         
Query: 233   cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 292
             ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 73616 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 73557

                                                                         
Query: 293   cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 352
             ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 73556 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 73497

                           
Query: 353   acgcggctgcagca 366
             | ||||||||||||
Sbjct: 73496 aggcggctgcagca 73483
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                            
Query: 233      cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 292
                ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 16510717 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 16510776

                                                                            
Query: 293      cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 352
                ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 16510777 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 16510836

                              
Query: 353      acgcggctgcagca 366
                | ||||||||||||
Sbjct: 16510837 aggcggctgcagca 16510850
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                            
Query: 233      cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 292
                ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 16504350 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 16504409

                                                                            
Query: 293      cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 352
                ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 16504410 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 16504469

                              
Query: 353      acgcggctgcagca 366
                | ||||||||||||
Sbjct: 16504470 aggcggctgcagca 16504483
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>dbj|AK062571.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C06, full
            insert sequence
          Length = 1289

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Minus

                                                                        
Query: 233  cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 292
            ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 1057 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 998

                                                                        
Query: 293  cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 352
            ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 997  caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 938

                          
Query: 353  acgcggctgcagca 366
            | ||||||||||||
Sbjct: 937  aggcggctgcagca 924
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>emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L9 on chromosome 22, complete
             sequence
          Length = 146438

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 538   tttttgtgctgcgtccaaattgg 560
             |||||||||||||||||||||||
Sbjct: 44078 tttttgtgctgcgtccaaattgg 44100
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>gb|AF419981.1|AF419981 Drosophila yakuba defective chorion-1 fc125 protein precursor (dec-1)
            mRNA, complete cds, alternatively spliced
          Length = 3898

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 322  gatgcagcacatgcagcagaggcagt 347
            ||||||||| ||||||||||||||||
Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
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>gb|AF419980.1|AF419980 Drosophila yakuba defective chorion-1 fc106 protein precursor (dec-1)
            mRNA, complete cds, alternatively spliced
          Length = 3911

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 322  gatgcagcacatgcagcagaggcagt 347
            ||||||||| ||||||||||||||||
Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
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>gb|AF419979.1|AF419979 Drosophila yakuba defective chorion-1 fc177 protein precursor (dec-1)
            mRNA, complete cds, alternatively spliced
          Length = 5926

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 322  gatgcagcacatgcagcagaggcagt 347
            ||||||||| ||||||||||||||||
Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
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>emb|CR407598.24| Zebrafish DNA sequence from clone CH211-141I4 in linkage group 1,
             complete sequence
          Length = 153682

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 558   tggtttgaagtacaaccatgct 579
             ||||||||||||||||||||||
Sbjct: 30588 tggtttgaagtacaaccatgct 30567
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>emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 in linkage group 7,
             complete sequence
          Length = 50326

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 322   gatgcagcacatgcagcagaggcag 346
             |||||||||||||||||||| ||||
Sbjct: 14896 gatgcagcacatgcagcagatgcag 14920
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>ref|XM_677758.1| PREDICTED: Danio rerio similar to trinucleotide repeat containing 9
            (LOC555286), partial mRNA
          Length = 2115

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 322  gatgcagcacatgcagcagaggcag 346
            |||||||||||||||||||| ||||
Sbjct: 1254 gatgcagcacatgcagcagatgcag 1278
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>gb|AY702083.1| Oikopleura dioica homeodomain protein NK2a (NK2a) gene, partial cds
          Length = 2380

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 527  ttctgcttgactttttgtgct 547
            |||||||||||||||||||||
Sbjct: 1545 ttctgcttgactttttgtgct 1565
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>gb|AF154094.1| Uncultured hydrocarbon seep bacterium BPC065 16S ribosomal RNA gene,
            partial sequence
          Length = 1521

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 473  agaccatgaagctggaatcg 492
            ||||||||||||||||||||
Sbjct: 1334 agaccatgaagctggaatcg 1353
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>gb|AY484743.1| Uncultured bacterium clone 99917 16S ribosomal RNA gene, partial
           sequence
          Length = 365

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 473 agaccatgaagctggaatcg 492
           ||||||||||||||||||||
Sbjct: 206 agaccatgaagctggaatcg 225
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>gb|AC122332.4| Mus musculus BAC clone RP23-346G14 from chromosome 10, complete
             sequence
          Length = 214728

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   ttgtgtcctttcggtttctg 531
             ||||||||||||||||||||
Sbjct: 44452 ttgtgtcctttcggtttctg 44433
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>gb|AC123041.2| Mus musculus BAC clone RP24-545E4 from 3, complete sequence
          Length = 191533

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 571    aaccatgcttgtgtactctgaaagaaca 598
              ||||| |||||||| |||||||||||||
Sbjct: 121396 aaccaagcttgtgtcctctgaaagaaca 121423
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>gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, complete sequence
          Length = 141868

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 137 cacagtatgacacccacaggcttc 160
           |||||||||||| |||||||||||
Sbjct: 730 cacagtatgacatccacaggcttc 707
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     cggctgcagcaccctccagc 375
               ||||||||||||||||||||
Sbjct: 2687473 cggctgcagcaccctccagc 2687492
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>emb|AL589744.18| Mouse DNA sequence from clone RP23-80C18 on chromosome 13 Contains a
             nove gene, a ribosomal protein large p1 (Rplp1) pseudogene
             and the Cmah gene for CMP-N-Acetylneuraminic acid
             hydroxylase, complete sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   aacctgtgaggaggttttcc 439
             ||||||||||||||||||||
Sbjct: 44844 aacctgtgaggaggttttcc 44863
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>gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, complete sequence
          Length = 227506

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 576  tgcttgtgtactctgaaaga 595
            ||||||||||||||||||||
Sbjct: 6193 tgcttgtgtactctgaaaga 6174
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>gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, complete sequence
          Length = 173836

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 410    tcctcgccaaaacctgtgaggagg 433
              ||||| ||||||||||||||||||
Sbjct: 128772 tcctccccaaaacctgtgaggagg 128795
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>gb|DQ394922.1| Uncultured bacterium clone VHS-B1-47 16S ribosomal RNA gene, partial
            sequence
          Length = 1532

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 473  agaccatgaagctggaatcg 492
            ||||||||||||||||||||
Sbjct: 1346 agaccatgaagctggaatcg 1365
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>gb|DQ394901.1| Uncultured delta proteobacterium clone VHS-B1-26 16S ribosomal RNA
            gene, partial sequence
          Length = 1513

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 473  agaccatgaagctggaatcg 492
            ||||||||||||||||||||
Sbjct: 1328 agaccatgaagctggaatcg 1347
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>gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, complete sequence
          Length = 203493

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 576    tgcttgtgtactctgaaaga 595
              ||||||||||||||||||||
Sbjct: 137251 tgcttgtgtactctgaaaga 137270
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>gb|AC090763.7| Homo sapiens chromosome 15, clone RP11-408F10, complete sequence
          Length = 149304

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 137    cacagtatgacacccacaggcttc 160
              |||||||||||| |||||||||||
Sbjct: 114055 cacagtatgacatccacaggcttc 114032
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>gb|AC083814.17|AC083814 Mus musculus 7 BAC RP23-129J16 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 191410

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    gatcattctttgatcaagca 127
              ||||||||||||||||||||
Sbjct: 114051 gatcattctttgatcaagca 114070
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>gb|AC080015.15|AC080015 Mus musculus 7 BAC RP23-163B17 (RPCI Mouse BAC) complete sequence
          Length = 202086

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    gatcattctttgatcaagca 127
              ||||||||||||||||||||
Sbjct: 177122 gatcattctttgatcaagca 177103
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>emb|AJ582703.1|UDE582703 Uncultured Desulfobacteraceae bacterium 16S rRNA gene, clone
           cLaKi-StA81
          Length = 1119

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 473 agaccatgaagctggaatcg 492
           ||||||||||||||||||||
Sbjct: 952 agaccatgaagctggaatcg 971
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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 427     gaggaggttttccttggtgg 446
               ||||||||||||||||||||
Sbjct: 1533189 gaggaggttttccttggtgg 1533208
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>gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome 14, complete sequence
          Length = 195329

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 435    tttccttggtggctgctttgtcac 458
              ||||||| ||||||||||||||||
Sbjct: 104867 tttcctttgtggctgctttgtcac 104890


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,748,240
Number of Sequences: 3902068
Number of extensions: 4748240
Number of successful extensions: 106553
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106413
Number of HSP's gapped (non-prelim): 140
length of query: 614
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 591
effective length of database: 17,143,297,704
effective search space: 10131688943064
effective search space used: 10131688943064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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