>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 476

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = -1

Query: 549 GMHPFSATAQSSHAQF------PGMYHPQQPPSIVSPHP 451
           G   F  T +  H +F      PG+Y P Q PSI SPHP
Sbjct: 166 GQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHP 204

>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = -1

Query: 558 QILGMHPFSATAQSSHAQFPGMYHPQQPPSIVSPHPMVHQQVP 430
           Q  G+HP    A   H Q PG+ HPQ PP +    P VH Q P
Sbjct: 400 QAPGVHP---PAPGIHPQAPGV-HPQPPPGVHPAAPGVHPQPP 438

>UBC3_ARATH (P42746) Ubiquitin-conjugating enzyme E2-17 kDa 3 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase 3) (Ubiquitin carrier protein
           3)
          Length = 150

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 372 PPLG--GLVQPHQLQHWDQWQMGPVDAPWD 455
           PP+G  G  Q + + HW+    GP D PWD
Sbjct: 20  PPVGISGAPQDNNIMHWNALIFGPEDTPWD 49

>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor|
            (LRP) (Alpha-2-macroglobulin receptor) (A2MR)
            (Apolipoprotein E receptor) (APOER) (CD91 antigen)
          Length = 4544

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
 Frame = -3

Query: 568  PIMPNPGNASFQCYSSILSCTIPRHVPPAAASLNRKSTSHGASTGPICHWSQCWSWC--- 398
            P  P PG  + QC++   SC +     P       K       TG  C   QCW  C   
Sbjct: 4192 PDAPRPGTCNLQCFNG-GSCFLNARRQP-------KCRCQPRYTGDKCELDQCWEHCRNG 4243

Query: 397  -GCTRPPSG 374
              C   PSG
Sbjct: 4244 GTCAASPSG 4252

>HUTU_XANCP (P58988) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 555

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 32/93 (34%), Positives = 41/93 (44%)
 Frame = +3

Query: 207 IRQSCTKKRGGSC*KEPIVVTLKALVTPLITDN*ETLFRSWAVSNSYDQAAAVDKPPLGG 386
           I +SCT KR       P+ V L   V  ++    E L R        DQ +A D P  G 
Sbjct: 224 IEESCTAKR-------PLSVGLLGNVADVLD---ELLLRGIKPDLLTDQTSAHD-PVNGY 272

Query: 387 LVQPHQLQHWDQWQMGPVDAPWDVDLRLREAAA 485
           L Q   ++ WD  +   V AP DV+   REA A
Sbjct: 273 LPQGWSVEEWDAKR---VSAPKDVEAAAREAMA 302

>Y115_ADE02 (P03290) Hypothetical protein E-115|
          Length = 115

 Score = 28.9 bits (63), Expect(2) = 3.6
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
 Frame = -3

Query: 562 MPNPGNASFQCYSS--ILSCTIPRHVPPAAASLNRKSTSHGASTGPICHWSQCWSW---- 401
           MP P N  F   SS  +  CT PR  PP  AS   ++T     T  +  WS   +W    
Sbjct: 30  MPTPRNRYFSRPSSTPLKVCTAPRAAPPPRASCAPRATPRRGWT--MTPWSNA-TWPTRR 86

Query: 400 --CGCTRPPSGGLSTA 359
              G    P+G  S+A
Sbjct: 87  AKTGSASAPAGPASSA 102



 Score = 20.8 bits (42), Expect(2) = 3.6
 Identities = 6/12 (50%), Positives = 12/12 (100%)
 Frame = -2

Query: 590 SGQATPGAYNAK 555
           +GQ++PG++NA+
Sbjct: 10  NGQSSPGSWNAR 21

>SYV_BORGA (Q660D6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 875

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 449 WCINRSHLPLVPMLELVWLHQAPKWGLINSSSLVI 345
           WCI+R         +LVW H+ P W  I++S L+I
Sbjct: 401 WCISR---------QLVWGHRIPAWYNIDTSELII 426

>SYV_MYCGE (P47576) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 837

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 452 PWCINRSHLPLVPMLELVWLHQAPKWGLINSSSLVI*IGDSPT 324
           PWCI+R         +L+W H+ P W   N+  +V  +G+ P+
Sbjct: 399 PWCISR---------QLIWGHKIPVWFENNTGEIV--VGEKPS 430


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,683,320
Number of Sequences: 219361
Number of extensions: 2065079
Number of successful extensions: 5132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5128
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)