>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                            
Query: 459      cactagcttctataccggggagacggagagcaggaactccggcatcaacctctgcagcag 518
                |||||||||||||||||| ||||| ||||| |||||||||||| | | ||||||||||||
Sbjct: 29112385 cactagcttctataccggtgagacagagagaaggaactccggctttatcctctgcagcag 29112326

                                   
Query: 519      tatgccgcagaaggggcaa 537
                |||||||||||||||||||
Sbjct: 29112325 tatgccgcagaaggggcaa 29112307



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 275      ttcctcgagctctaccgaagctacagatgccactgca 311
                |||||| | |||||| |||||||||||||||| ||||
Sbjct: 29114508 ttcctcaatctctactgaagctacagatgccagtgca 29114472

>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                         
Query: 459   cactagcttctataccggggagacggagagcaggaactccggcatcaacctctgcagcag 518
             |||||||||||||||||| ||||| ||||| |||||||||||| | | ||||||||||||
Sbjct: 72751 cactagcttctataccggtgagacagagagaaggaactccggctttatcctctgcagcag 72692

                                
Query: 519   tatgccgcagaaggggcaa 537
             |||||||||||||||||||
Sbjct: 72691 tatgccgcagaaggggcaa 72673



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 275   ttcctcgagctctaccgaagctacagatgccactgca 311
             |||||| | |||||| |||||||||||||||| ||||
Sbjct: 74874 ttcctcaatctctactgaagctacagatgccagtgca 74838

>dbj|AK121315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113A21, full
            insert sequence
          Length = 3386

 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                        
Query: 459  cactagcttctataccggggagacggagagcaggaactccggcatcaacctctgcagcag 518
            |||||||||||||||||| ||||| ||||| |||||||||||| | | ||||||||||||
Sbjct: 3176 cactagcttctataccggtgagacagagagaaggaactccggctttatcctctgcagcag 3117

                               
Query: 519  tatgccgcagaaggggcaa 537
            |||||||||||||||||||
Sbjct: 3116 tatgccgcagaaggggcaa 3098

>ref|NM_192218.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2925

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 468  ctataccggggagacggagagcaggaactccggcatcaacctctgcagcagtatgccgca 527
            ||||||||| ||||| ||||| |||||||||||| | | |||||||||||||||||||||
Sbjct: 2925 ctataccggtgagacagagagaaggaactccggctttatcctctgcagcagtatgccgca 2866

                      
Query: 528  gaaggggcaa 537
            ||||||||||
Sbjct: 2865 gaaggggcaa 2856

>gb|AY109204.1| Zea mays PCO122709 mRNA sequence
          Length = 358

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 468 ctataccggggagacggagagcaggaactccggcatcaacctctgcagcagtatgccgca 527
           ||||||||| |||  ||||||||||||| |||||||| ||||||||||||| | ||||||
Sbjct: 141 ctataccggcgaggtggagagcaggaacgccggcatcgacctctgcagcaggacgccgca 82

                     
Query: 528 gaaggggcaa 537
           ||||||||||
Sbjct: 81  gaaggggcaa 72

>gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, complete sequence
          Length = 160118

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 242   gaaccatttccttttgccttg 262
             |||||||||||||||||||||
Sbjct: 85929 gaaccatttccttttgccttg 85949

>ref|XM_513613.1| PREDICTED: Pan troglodytes similar to KIAA0893 protein (LOC457082),
            mRNA
          Length = 3124

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2142 agctacagatgccactgcac 2123

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    aggccgtaagccgccaggcc 168
              ||||||||||||||||||||
Sbjct: 119940 aggccgtaagccgccaggcc 119921

>ref|XM_864695.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 2 (LOC512354), mRNA
          Length = 4226

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2680 agctacagatgccactgcac 2661

>ref|XM_589861.2| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 1 (LOC512354), mRNA
          Length = 3883

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2337 agctacagatgccactgcac 2318

>ref|XM_873788.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 3 (LOC512354), mRNA
          Length = 4186

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2640 agctacagatgccactgcac 2621

>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence
          Length = 171059

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 236   tctcttgaaccatttccttttgcc 259
             ||||||||||||||||||| ||||
Sbjct: 71165 tctcttgaaccatttccttgtgcc 71142

>ref|NM_014969.3| Homo sapiens WD repeat domain 47 (WDR47), mRNA
          Length = 4259

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2685 agctacagatgccactgcac 2666

>emb|BX664743.23| Zebrafish DNA sequence from clone DKEY-11D20 in linkage group 22,
             complete sequence
          Length = 180012

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 549   aggcgctgaacagagtgacg 568
             ||||||||||||||||||||
Sbjct: 17300 aggcgctgaacagagtgacg 17281

>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the
            TAF13 gene for TAF13 RNA polymerase II TATA box binding
            protein (TBP)-associated factor 18kDa, a RAN member RAS
            oncogene family (RAN) pseudogene, a ribosomal protein S27
            (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of
            a novel gene (KIAA0893) and three CpG islands, complete
            sequence
          Length = 107685

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 3053 agctacagatgccactgcac 3072

>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 482     cggagagcaggaactccggc 501
               ||||||||||||||||||||
Sbjct: 2923281 cggagagcaggaactccggc 2923262

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 512     gcagcagtatgccgcagaaggggc 535
               |||||||||||||||||| |||||
Sbjct: 3027588 gcagcagtatgccgcagacggggc 3027565

>gb|BC034964.2| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:26714
            IMAGE:4823902), complete cds
          Length = 4259

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2685 agctacagatgccactgcac 2666

>gb|BC039254.1| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:33742
            IMAGE:5287954), complete cds
          Length = 4181

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2593 agctacagatgccactgcac 2574

>gb|AF454824.1| Enterococcus faecalis pathogenicity island, complete sequence
          Length = 153571

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   tctagcaataaagaacaaac 411
             ||||||||||||||||||||
Sbjct: 16379 tctagcaataaagaacaaac 16398

>dbj|AK074616.1| Homo sapiens cDNA FLJ90135 fis, clone HEMBB1000668
          Length = 2375

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 agctacagatgccactgcac 312
           ||||||||||||||||||||
Sbjct: 824 agctacagatgccactgcac 805

>gb|AF343839.1|AF343839 Enterococcus faecalis strain OG1X plasmid pAD1 conjugation protein
            gene, complete cds; and unknown gene
          Length = 1892

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 392  tctagcaataaagaacaaac 411
            ||||||||||||||||||||
Sbjct: 1563 tctagcaataaagaacaaac 1582

>ref|NM_031320.1| Rattus norvegicus cadherin EGF LAG seven-pass G-type receptor 3
            (Celsr3), mRNA
          Length = 11868

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 47   acttgaccagntacaagctctag 69
            |||||||||| ||||||||||||
Sbjct: 4977 acttgaccagctacaagctctag 4955

>gb|AE002565.1|AE002565 Enterococcus faecalis plasmid pAM373, complete sequence
          Length = 36804

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   tctagcaataaagaacaaac 411
             ||||||||||||||||||||
Sbjct: 26979 tctagcaataaagaacaaac 26960

>gb|AE004731.1| Pseudomonas aeruginosa PAO1, section 292 of 529 of the complete genome
          Length = 18765

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   cgaggaacagcaggcgctga 557
             ||||||||||||||||||||
Sbjct: 18352 cgaggaacagcaggcgctga 18371

>gb|AY190946.1| Drosophila pseudoobscura clone DPSF01_27_F17 (D1456) genomic sequence
          Length = 44117

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 510  ctgcagcagtatgccgcagaaggg 533
            ||||||||| ||||||||||||||
Sbjct: 4912 ctgcagcagcatgccgcagaaggg 4889

>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10,
             complete sequence
          Length = 212133

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   actctagcaataaagaacaa 409
             ||||||||||||||||||||
Sbjct: 98991 actctagcaataaagaacaa 99010

>emb|BX088583.12| Zebrafish DNA sequence from clone CH211-211K8 in linkage group 22,
              complete sequence
          Length = 202012

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 549    aggcgctgaacagagtgacg 568
              ||||||||||||||||||||
Sbjct: 153008 aggcgctgaacagagtgacg 153027

>dbj|AB020700.1| Homo sapiens mRNA for KIAA0893 protein, partial cds
          Length = 4195

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agctacagatgccactgcac 312
            ||||||||||||||||||||
Sbjct: 2644 agctacagatgccactgcac 2625

>emb|X96977.1|EFPAD1ORF E.faecalis plasmid pAD1, open reading frames
          Length = 7557

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 392  tctagcaataaagaacaaac 411
            ||||||||||||||||||||
Sbjct: 4279 tctagcaataaagaacaaac 4298

>gb|AF118228.1|AF118228 Mus musculus Ksp-cadherin gene, promoter region and partial cds
          Length = 4884

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  gctacagatgccactgcaca 313
            ||||||||||||||||||||
Sbjct: 3421 gctacagatgccactgcaca 3440

>gb|AE016833.1| Enterococcus faecalis V583 plasmid pTEF1, complete sequence
          Length = 66320

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   tctagcaataaagaacaaac 411
             ||||||||||||||||||||
Sbjct: 30608 tctagcaataaagaacaaac 30589

>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    tctagcaataaagaacaaac 411
              ||||||||||||||||||||
Sbjct: 458667 tctagcaataaagaacaaac 458686

>gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complete sequence
          Length = 204919

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    gctacagatgccactgcaca 313
              ||||||||||||||||||||
Sbjct: 149203 gctacagatgccactgcaca 149184

>dbj|AB011528.1| Rattus norvegicus mRNA for MEGF2, complete cds
          Length = 11868

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 47   acttgaccagntacaagctctag 69
            |||||||||| ||||||||||||
Sbjct: 4977 acttgaccagctacaagctctag 4955


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,620,671
Number of Sequences: 3902068
Number of extensions: 3620671
Number of successful extensions: 57594
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57456
Number of HSP's gapped (non-prelim): 138
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)