ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLP34_ARATH (Q9SSK7) MLP-like protein 34 41 6e-04
2MLP28_ARATH (Q9SSK9) MLP-like protein 28 39 0.003
3MLP31_ARATH (Q941R6) MLP-like protein 31 39 0.004
4MLP43_ARATH (Q9SSK5) MLP-like protein 43 35 0.061
5ML146_PAPSO (Q06394) Major latex protein 146 (MLP 146) 35 0.061
6ML423_ARATH (Q93VR4) MLP-like protein 423 34 0.10
7MLP15_PAPSO (P19825) Major latex protein 15 (MLP 15) (gMLP15) 33 0.14
8MLP22_PAPSO (Q41020) Major latex protein 22 (MLP 22) (gMLP22) 31 0.88
9ITBN_DROME (Q27591) Integrin beta-nu precursor 27 9.7

>MLP34_ARATH (Q9SSK7) MLP-like protein 34|
          Length = 316

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 18/46 (39%), Positives = 31/46 (67%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEPDVI 197
           L+  YK+F +T+QVT K    G G++V+W ++++K SD V  P+ +
Sbjct: 98  LMKEYKSFLITIQVTPKHG--GPGSIVHWHLEYEKISDEVAHPETL 141



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEPDVI 197
           L+  YK+F +T+QVT K    G G+VV+W  +++K ++ V  P+ +
Sbjct: 254 LMKEYKSFVITIQVTPKHG--GSGSVVHWHFEYEKINEEVAHPETL 297



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>MLP28_ARATH (Q9SSK9) MLP-like protein 28|
          Length = 335

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 17/46 (36%), Positives = 31/46 (67%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEPDVI 197
           L+  YK+F +T+QVT K    G G++V+W ++++K S+ V  P+ +
Sbjct: 273 LMKEYKSFLLTIQVTPK--LGGPGSIVHWHLEYEKISEEVAHPETL 316



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 17/46 (36%), Positives = 31/46 (67%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEPDVI 197
           L+  YK+F +T+QVT K    G G++V+W ++++K S+ V  P+ +
Sbjct: 111 LMKEYKSFLLTIQVTPK--PGGPGSIVHWHLEYEKISEEVAHPETL 154



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>MLP31_ARATH (Q941R6) MLP-like protein 31|
          Length = 162

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEPD 203
           L+  YK+F +T+QVT K    G G+VV+W ++++K  D V  P+
Sbjct: 100 LLKEYKSFVITIQVTPK--RGGPGSVVHWHVEYEKIDDKVAHPE 141



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>MLP43_ARATH (Q9SSK5) MLP-like protein 43|
          Length = 158

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEPDVI 197
           L++ YK+F  T+QVT K      G++ +W ++++K S+ V  P+ +
Sbjct: 96  LMNEYKSFAFTLQVTPKQGES--GSIAHWHLEYEKISEEVAHPETL 139



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>ML146_PAPSO (Q06394) Major latex protein 146 (MLP 146)|
          Length = 159

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEP 206
           L++ YK F  T+ V  K  ++G G +V WT+D++K ++  P P
Sbjct: 97  LMNDYKKFDATLVVNPK--SNGHGCIVKWTIDYEKMNEDSPVP 137



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>ML423_ARATH (Q93VR4) MLP-like protein 423|
          Length = 155

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEPDVIK 194
           ++ +YK F+ T+ V  K   DG G+++ W+ +F+K +  + +P VIK
Sbjct: 93  MLEYYKTFKGTITVIPK---DG-GSLLKWSGEFEKTAHEIDDPHVIK 135



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>MLP15_PAPSO (P19825) Major latex protein 15 (MLP 15) (gMLP15)|
          Length = 159

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEP 206
           +++ YK F  T+ V  K  A+G G++V W +D++K ++  P P
Sbjct: 97  MMNDYKKFVATLVV--KPKANGQGSIVTWIVDYEKINEDSPVP 137



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>MLP22_PAPSO (Q41020) Major latex protein 22 (MLP 22) (gMLP22)|
          Length = 158

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 334 LVSFYKNFRVTVQVTYKGSADGVGAVVNWTMDFDKASDXVPEP 206
           L+  YK F  T+       ADG G++V W ++++K ++  P P
Sbjct: 98  LLDDYKKFDATL---VNPKADGHGSIVTWIVEYEKINEDSPVP 137



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>ITBN_DROME (Q27591) Integrin beta-nu precursor|
          Length = 799

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 69  CRRCLLS**SXAWCSDRVYRV 7
           C RCL +    AWC+D+ Y+V
Sbjct: 39  CERCLSAHLECAWCTDKEYQV 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,606,337
Number of Sequences: 219361
Number of extensions: 504939
Number of successful extensions: 1623
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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