ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1m12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030H03, full insert sequence Length = 2320 Score = 416 bits (210), Expect = e-113 Identities = 378/434 (87%) Strand = Plus / Minus Query: 79 ttactcaaacgcaagcctttgagtgcctacaagtgatgcataactgcctcccttggcgac 138 ||||||||| || ||||| || || || |||||||| ||||| | ||| || | || || Sbjct: 2132 ttactcaaatgcgagcctctgtgtaccaacaagtgacgcatatcggccaccgctagcaac 2073 Query: 139 caattccgcatgtgtcccaagttccatgatcttgccatctgagcagacggcgatttggtg 198 || ||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || Sbjct: 2072 cagttcagcatgagtcccaagttctgctatcttgccatctgagcagacagcgatttgatg 2013 Query: 199 cgcgttttgcacggtgctcaacctgtgggcgatcaccaaagaagtcctgcccttcatcaa 258 ||| ||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||| Sbjct: 2012 cgcattttgcacggtgctcaatctgtgcgcgatcaccagagaagtccttcccttcatcaa 1953 Query: 259 gagatcgagagcttcctgcacaagccgctcacttgttgtgtccagtgcacttgtagcctc 318 | ||| |||||||||||| |||||||| ||||| || || || |||||||| |||||||| Sbjct: 1952 gtgattgagagcttcctgtacaagccgttcactggtcgtatcaagtgcactggtagcctc 1893 Query: 319 atcaagtattagaaaaggagcatttttcagaagagctcgggcaattgcaattctctgtct 378 |||||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||| Sbjct: 1892 atcaagtattagaataggagagtttttcagaagagcacgagcaatagcaattctctgtct 1833 Query: 379 ctgtcccccacttaggaggctacctcgttctccaacaagagtatcatagccctgtggaag 438 ||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||| Sbjct: 1832 ctgtcccccacttaggaggctgccacgttcaccaacaagtgtgtcatagccctgtggaag 1773 Query: 439 tgagatgatgaattcatgagcattggcagctttagcagctttgattatctcatccttgga 498 |||| ||||||||||||||||||||||||||||| || || ||||||||||||||||| Sbjct: 1772 agagacaatgaattcatgagcattggcagctttagcggcctttattatctcatccttgga 1713 Query: 499 gacaacgtcatccg 512 ||||| ||||||| Sbjct: 1712 aacaacatcatccg 1699
>dbj|AK067140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094I22, full insert sequence Length = 2793 Score = 416 bits (210), Expect = e-113 Identities = 378/434 (87%) Strand = Plus / Minus Query: 79 ttactcaaacgcaagcctttgagtgcctacaagtgatgcataactgcctcccttggcgac 138 ||||||||| || ||||| || || || |||||||| ||||| | ||| || | || || Sbjct: 2133 ttactcaaatgcgagcctctgtgtaccaacaagtgacgcatatcggccaccgctagcaac 2074 Query: 139 caattccgcatgtgtcccaagttccatgatcttgccatctgagcagacggcgatttggtg 198 || ||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || Sbjct: 2073 cagttcagcatgagtcccaagttctgctatcttgccatctgagcagacagcgatttgatg 2014 Query: 199 cgcgttttgcacggtgctcaacctgtgggcgatcaccaaagaagtcctgcccttcatcaa 258 ||| ||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||| Sbjct: 2013 cgcattttgcacggtgctcaatctgtgcgcgatcaccagagaagtccttcccttcatcaa 1954 Query: 259 gagatcgagagcttcctgcacaagccgctcacttgttgtgtccagtgcacttgtagcctc 318 | ||| |||||||||||| |||||||| ||||| || || || |||||||| |||||||| Sbjct: 1953 gtgattgagagcttcctgtacaagccgttcactggtcgtatcaagtgcactggtagcctc 1894 Query: 319 atcaagtattagaaaaggagcatttttcagaagagctcgggcaattgcaattctctgtct 378 |||||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||| Sbjct: 1893 atcaagtattagaataggagagtttttcagaagagcacgagcaatagcaattctctgtct 1834 Query: 379 ctgtcccccacttaggaggctacctcgttctccaacaagagtatcatagccctgtggaag 438 ||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||| Sbjct: 1833 ctgtcccccacttaggaggctgccacgttcaccaacaagtgtgtcatagccctgtggaag 1774 Query: 439 tgagatgatgaattcatgagcattggcagctttagcagctttgattatctcatccttgga 498 |||| ||||||||||||||||||||||||||||| || || ||||||||||||||||| Sbjct: 1773 agagacaatgaattcatgagcattggcagctttagcggcctttattatctcatccttgga 1714 Query: 499 gacaacgtcatccg 512 ||||| ||||||| Sbjct: 1713 aacaacatcatccg 1700
>ref|XM_506318.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_H04.139 patrial mRNA Length = 1836 Score = 240 bits (121), Expect = 4e-60 Identities = 178/197 (90%) Strand = Plus / Minus Query: 316 ctcatcaagtattagaaaaggagcatttttcagaagagctcgggcaattgcaattctctg 375 ||||||||||||||||| ||||| |||||||||||||| || ||||| ||||||||||| Sbjct: 1836 ctcatcaagtattagaataggagagtttttcagaagagcacgagcaatagcaattctctg 1777 Query: 376 tctctgtcccccacttaggaggctacctcgttctccaacaagagtatcatagccctgtgg 435 |||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct: 1776 tctctgtcccccacttaggaggctgccacgttcaccaacaagtgtgtcatagccctgtgg 1717 Query: 436 aagtgagatgatgaattcatgagcattggcagctttagcagctttgattatctcatcctt 495 ||| |||| ||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 1716 aagagagacaatgaattcatgagcattggcagctttagcggcctttattatctcatcctt 1657 Query: 496 ggagacaacgtcatccg 512 ||| ||||| ||||||| Sbjct: 1656 ggaaacaacatcatccg 1640
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 180 bits (91), Expect = 3e-42 Identities = 202/239 (84%) Strand = Plus / Minus Query: 79 ttactcaaacgcaagcctttgagtgcctacaagtgatgcataactgcctcccttggcgac 138 ||||||||| || ||||| || || || |||||||| ||||| | ||| || | || || Sbjct: 16333207 ttactcaaatgcgagcctctgtgtaccaacaagtgacgcatatcggccaccgctagcaac 16333148 Query: 139 caattccgcatgtgtcccaagttccatgatcttgccatctgagcagacggcgatttggtg 198 || ||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || Sbjct: 16333147 cagttcagcatgagtcccaagttctgctatcttgccatctgagcagacagcgatttgatg 16333088 Query: 199 cgcgttttgcacggtgctcaacctgtgggcgatcaccaaagaagtcctgcccttcatcaa 258 ||| ||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||| Sbjct: 16333087 cgcattttgcacggtgctcaatctgtgcgcgatcaccagagaagtccttcccttcatcaa 16333028 Query: 259 gagatcgagagcttcctgcacaagccgctcacttgttgtgtccagtgcacttgtagcct 317 | ||| |||||||||||| |||||||| ||||| || || || |||||||| ||||||| Sbjct: 16333027 gtgattgagagcttcctgtacaagccgttcactggtcgtatcaagtgcactggtagcct 16332969 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 429 cctgtggaagtgagatgatgaattcatgagcattggcagctttagcagctttgattatct 488 |||||||||| |||| ||||||||||||||||||||||||||||| || || ||||||| Sbjct: 16330478 cctgtggaagagagacaatgaattcatgagcattggcagctttagcggcctttattatct 16330419 Query: 489 catccttggagacaacgtcatccg 512 |||||||||| ||||| ||||||| Sbjct: 16330418 catccttggaaacaacatcatccg 16330395 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 373 ctgtctctgtcccccacttaggaggctacctcgttctccaacaagagtatcatagccct 431 ||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| Sbjct: 16330635 ctgtctctgtcccccacttaggaggctgccacgttcaccaacaagtgtgtcatagccct 16330577 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 315 cctcatcaagtattagaaaaggagcatttttcagaagagctcgggcaattgcaattctct 374 |||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||| Sbjct: 16331136 cctcatcaagtattagaataggagagtttttcagaagagcacgagcaatagcaattctct 16331077 Query: 375 g 375 | Sbjct: 16331076 g 16331076
>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0473C09 Length = 141066 Score = 180 bits (91), Expect = 3e-42 Identities = 202/239 (84%) Strand = Plus / Minus Query: 79 ttactcaaacgcaagcctttgagtgcctacaagtgatgcataactgcctcccttggcgac 138 ||||||||| || ||||| || || || |||||||| ||||| | ||| || | || || Sbjct: 39263 ttactcaaatgcgagcctctgtgtaccaacaagtgacgcatatcggccaccgctagcaac 39204 Query: 139 caattccgcatgtgtcccaagttccatgatcttgccatctgagcagacggcgatttggtg 198 || ||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || Sbjct: 39203 cagttcagcatgagtcccaagttctgctatcttgccatctgagcagacagcgatttgatg 39144 Query: 199 cgcgttttgcacggtgctcaacctgtgggcgatcaccaaagaagtcctgcccttcatcaa 258 ||| ||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||| Sbjct: 39143 cgcattttgcacggtgctcaatctgtgcgcgatcaccagagaagtccttcccttcatcaa 39084 Query: 259 gagatcgagagcttcctgcacaagccgctcacttgttgtgtccagtgcacttgtagcct 317 | ||| |||||||||||| |||||||| ||||| || || || |||||||| ||||||| Sbjct: 39083 gtgattgagagcttcctgtacaagccgttcactggtcgtatcaagtgcactggtagcct 39025 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 429 cctgtggaagtgagatgatgaattcatgagcattggcagctttagcagctttgattatct 488 |||||||||| |||| ||||||||||||||||||||||||||||| || || ||||||| Sbjct: 36534 cctgtggaagagagacaatgaattcatgagcattggcagctttagcggcctttattatct 36475 Query: 489 catccttggagacaacgtcatccg 512 |||||||||| ||||| ||||||| Sbjct: 36474 catccttggaaacaacatcatccg 36451 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 373 ctgtctctgtcccccacttaggaggctacctcgttctccaacaagagtatcatagccct 431 ||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| Sbjct: 36691 ctgtctctgtcccccacttaggaggctgccacgttcaccaacaagtgtgtcatagccct 36633 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 315 cctcatcaagtattagaaaaggagcatttttcagaagagctcgggcaattgcaattctct 374 |||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||| Sbjct: 37192 cctcatcaagtattagaataggagagtttttcagaagagcacgagcaatagcaattctct 37133 Query: 375 g 375 | Sbjct: 37132 g 37132
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 429 cctgtggaagtgagatgatgaattcatgagcattggcagctttagcagctttgattatct 488 |||||||||| |||| ||||||||||||||||||||||||||||| || || ||||||| Sbjct: 150916 cctgtggaagagagacaatgaattcatgagcattggcagctttagcggcctttattatct 150857 Query: 489 catccttggagacaacgtcatccg 512 |||||||||| ||||| ||||||| Sbjct: 150856 catccttggaaacaacatcatccg 150833 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 373 ctgtctctgtcccccacttaggaggctacctcgttctccaacaagagtatcatagccct 431 ||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| Sbjct: 151073 ctgtctctgtcccccacttaggaggctgccacgttcaccaacaagtgtgtcatagccct 151015 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 315 cctcatcaagtattagaaaaggagcatttttcagaagagctcgggcaattgcaattctct 374 |||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||| Sbjct: 151574 cctcatcaagtattagaataggagagtttttcagaagagcacgagcaatagcaattctct 151515 Query: 375 g 375 | Sbjct: 151514 g 151514
>ref|XM_663031.1| Cryptosporidium hominis TU502 ATP-binding cassette protein 3 (Chro.60540) partial mRNA Length = 3852 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 359 gcaattgcaattctctgtctctgtcccccacttaggaggct 399 |||||||||||||||||||||||||| |||||||| ||||| Sbjct: 1622 gcaattgcaattctctgtctctgtccaccacttagaaggct 1582
>ref|NM_118677.2| Arabidopsis thaliana ATNAP8; ATPase, coupled to transmembrane movement of substances AT4G25450 (ATNAP8) transcript variant AT4G25450.1 mRNA, complete cds Length = 2293 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcccccacttaggagg 397 ||||| ||||| |||| |||||| || |||| |||||||| ||||| || || || | | Sbjct: 1941 gcattcttcagcagagatcgggctatggcaactctctgtcgttgtcctccgctaagcaag 1882 Query: 398 ctacctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatga 457 | |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 1881 cctcctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatga 1822 Query: 458 gcattggcagcttt 471 || ||||||||||| Sbjct: 1821 gcgttggcagcttt 1808
>gb|AC122544.1| Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence Length = 121637 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 299 tccagtgcacttgtagcctcatcaagtattagaa 332 |||||||||||||||||||||||||||| ||||| Sbjct: 26561 tccagtgcacttgtagcctcatcaagtagtagaa 26594
>gb|AY094470.1| Arabidopsis thaliana At4g25450/M7J2_180 mRNA, complete cds Length = 2270 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcccccacttaggagg 397 ||||| ||||| |||| |||||| || |||| |||||||| ||||| || || || | | Sbjct: 1940 gcattcttcagcagagatcgggctatggcaactctctgtcgttgtcctccgctaagcaag 1881 Query: 398 ctacctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatga 457 | |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 1880 cctcctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatga 1821 Query: 458 gcattggcagcttt 471 || ||||||||||| Sbjct: 1820 gcgttggcagcttt 1807
>dbj|AK220751.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-16-G17 Length = 2297 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcccccacttaggagg 397 ||||| ||||| |||| |||||| || |||| |||||||| ||||| || || || | | Sbjct: 1916 gcattcttcagcagagatcgggctatggcaactctctgtcgttgtcctccgctaagcaag 1857 Query: 398 ctacctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatga 457 | |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 1856 cctcctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatga 1797 Query: 458 gcattggcagcttt 471 || ||||||||||| Sbjct: 1796 gcgttggcagcttt 1783
>dbj|AK176118.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-91-I02 Length = 2297 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcccccacttaggagg 397 ||||| ||||| |||| |||||| || |||| |||||||| ||||| || || || | | Sbjct: 1916 gcattcttcagcagagatcgggctatggcaactctctgtcgttgtcctccgctaagcaag 1857 Query: 398 ctacctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatga 457 | |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 1856 cctcctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatga 1797 Query: 458 gcattggcagcttt 471 || ||||||||||| Sbjct: 1796 gcgttggcagcttt 1783
>dbj|AK176078.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-83-A11 Length = 2311 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcccccacttaggagg 397 ||||| ||||| |||| |||||| || |||| |||||||| ||||| || || || | | Sbjct: 1943 gcattcttcagcagagatcgggctatggcaactctctgtcgttgtcctccgctaagcaag 1884 Query: 398 ctacctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatga 457 | |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 1883 cctcctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatga 1824 Query: 458 gcattggcagcttt 471 || ||||||||||| Sbjct: 1823 gcgttggcagcttt 1810
>dbj|AK175939.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-62-A22 Length = 2297 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcccccacttaggagg 397 ||||| ||||| |||| |||||| || |||| |||||||| ||||| || || || | | Sbjct: 1916 gcattcttcagcagagatcgggctatggcaactctctgtcgttgtcctccgctaagcaag 1857 Query: 398 ctacctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatga 457 | |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 1856 cctcctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatga 1797 Query: 458 gcattggcagcttt 471 || ||||||||||| Sbjct: 1796 gcgttggcagcttt 1783
>dbj|AK175486.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-91-K22 Length = 2324 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcccccacttaggagg 397 ||||| ||||| |||| |||||| || |||| |||||||| ||||| || || || | | Sbjct: 1943 gcattcttcagcagagatcgggctatggcaactctctgtcgttgtcctccgctaagcaag 1884 Query: 398 ctacctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatga 457 | |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 1883 cctcctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatga 1824 Query: 458 gcattggcagcttt 471 || ||||||||||| Sbjct: 1823 gcgttggcagcttt 1810
>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4 Length = 277703 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 359 gcaattgcaattctctgtctctgtcccccacttaggaggc 398 |||||||||||||| ||||||||||| |||||||| |||| Sbjct: 86398 gcaattgcaattctttgtctctgtccaccacttagaaggc 86437
>gb|AF315509.1| Cryptosporidium parvum ATP-binding cassette protein 3 (ABC3) gene, complete cds Length = 4450 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 359 gcaattgcaattctctgtctctgtcccccacttaggaggc 398 |||||||||||||| ||||||||||| |||||||| |||| Sbjct: 1774 gcaattgcaattctttgtctctgtccaccacttagaaggc 1735
>ref|NM_001036637.1| Arabidopsis thaliana ATNAP8 AT4G25450 (ATNAP8) transcript variant AT4G25450.2 mRNA, complete cds Length = 2436 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 401 cctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatgagca 460 |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||||| Sbjct: 1879 cctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatgagcg 1820 Query: 461 ttggcagcttt 471 ||||||||||| Sbjct: 1819 ttggcagcttt 1809
>ref|XM_616867.2| PREDICTED: Bos taurus similar to Multidrug resistance protein 1 (P-glycoprotein 1) (LOC536724), mRNA Length = 3897 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 352 agctcgggcaattgcaattctctgtctctgtcccccact 390 |||||| |||||||||||||||||| ||||||| ||||| Sbjct: 1677 agctcgagcaattgcaattctctgtttctgtcctccact 1639
>dbj|AK176612.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL25-13-K16 Length = 2348 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 401 cctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatgagca 460 |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||||| Sbjct: 1812 cctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatgagcg 1753 Query: 461 ttggcagcttt 471 ||||||||||| Sbjct: 1752 ttggcagcttt 1742
>dbj|AK175416.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL21-85-E17 Length = 2348 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 401 cctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatgagca 460 |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||||| Sbjct: 1812 cctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatgagcg 1753 Query: 461 ttggcagcttt 471 ||||||||||| Sbjct: 1752 ttggcagcttt 1742
>dbj|AK175205.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL21-63-B02 Length = 2348 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 401 cctcgttctccaacaagagtatcatagccctgtggaagtgagatgatgaattcatgagca 460 |||| ||| ||||| || ||||| || ||||| ||||||||||| || || |||||||| Sbjct: 1812 cctctttcaccaaccagtgtatcgtatccctgaggaagtgagattataaaatcatgagcg 1753 Query: 461 ttggcagcttt 471 ||||||||||| Sbjct: 1752 ttggcagcttt 1742
>ref|NM_191827.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3612 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 446 atgaattcatgagcattggcagctttagcagctt 479 ||||||||||| ||||| |||||||||||||||| Sbjct: 3257 atgaattcatgtgcatttgcagctttagcagctt 3224
>dbj|AK061902.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H06, full insert sequence Length = 2115 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 446 atgaattcatgagcattggcagctttagcagctt 479 ||||||||||| ||||| |||||||||||||||| Sbjct: 1583 atgaattcatgtgcatttgcagctttagcagctt 1550
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 446 atgaattcatgagcattggcagctttagcagctt 479 ||||||||||| ||||| |||||||||||||||| Sbjct: 30183271 atgaattcatgtgcatttgcagctttagcagctt 30183304
>dbj|AP003229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0022F10 Length = 150498 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 446 atgaattcatgagcattggcagctttagcagctt 479 ||||||||||| ||||| |||||||||||||||| Sbjct: 88093 atgaattcatgtgcatttgcagctttagcagctt 88126
>dbj|AK067006.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093O09, full insert sequence Length = 4009 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 446 atgaattcatgagcattggcagctttagcagctt 479 ||||||||||| ||||| |||||||||||||||| Sbjct: 3479 atgaattcatgtgcatttgcagctttagcagctt 3446
>emb|AJ535055.1|OSA535055 Oryza sativa (japonica cultivar-group) mdr17 gene for MDR-like ABC transporter, exons 1-9 Length = 5651 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 446 atgaattcatgagcattggcagctttagcagctt 479 ||||||||||| ||||| |||||||||||||||| Sbjct: 5198 atgaattcatgtgcatttgcagctttagcagctt 5165
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 297 tgtccagtgcacttgtagcctcatc 321 ||||||||||||||||||||||||| Sbjct: 1727168 tgtccagtgcacttgtagcctcatc 1727144
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 352 agctcgggcaattgcaattctctgtctctgtcc 384 ||||| ||||||||||||||||||||| ||||| Sbjct: 1078481 agctctggcaattgcaattctctgtctttgtcc 1078449
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence Length = 116601 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Plus Query: 444 tgatgaattcatgagcattggcagcttt 471 ||||||||||||||||||| |||||||| Sbjct: 22088 tgatgaattcatgagcatttgcagcttt 22115
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 353 gctcgggcaattgcaattctctgtctctgtccccca 388 ||||||||||| ||||||| |||||| ||||||||| Sbjct: 1903838 gctcgggcaatagcaattcgctgtctttgtccccca 1903803
>dbj|AB035331.1| Physarum polycephalum PPABC18 mRNA for ABC protein, complete cds Length = 1157 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 400 acctcgttctccaacaagagtatcatagccctgtgg 435 ||||| ||||||||| |||||||||||||| ||||| Sbjct: 796 acctctttctccaaccagagtatcatagccttgtgg 761
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcc 384 |||||||| |||| ||||||||||| |||||| | |||||| ||||| Sbjct: 2401122 gcatttttgagaatagctcgggcaaatgcaatacgctgtctttgtcc 2401076
>ref|XM_602101.2| PREDICTED: Bos taurus similar to ATP-binding cassette, subfamily B, member 4 isoform B (LOC523795), mRNA Length = 4317 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 353 gctcgggcaattgcaattctctgtctctgtccccc 387 ||||||||||| ||||| |||||| |||||||||| Sbjct: 4043 gctcgggcaatagcaatcctctgtttctgtccccc 4009
>ref|NM_008830.1| Mus musculus ATP-binding cassette, sub-family B (MDR/TAP), member 4 (Abcb4), mRNA Length = 4084 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1818 cgggcaatggcgattctctgtttctgtcccccact 1784
>ref|NM_011076.1| Mus musculus ATP-binding cassette, sub-family B (MDR/TAP), member 1A (Abcb1a), mRNA Length = 4924 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1752 cgggcaatggcgattctctgtttctgtcccccact 1718
>ref|NM_011075.1| Mus musculus ATP-binding cassette, sub-family B (MDR/TAP), member 1B (Abcb1b), mRNA Length = 4298 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1734 cgggcaatggcgattctctgtttctgtcccccact 1700
>gb|AC140398.2| Mus musculus BAC clone RP23-162P5 from chromosome 5, complete sequence Length = 200640 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 114466 cgggcaatggcgattctctgtttctgtcccccact 114500
>emb|Y10099.1|HVPGLYH H.vulgare mRNA for novel P-glycoprotein homologue Length = 3790 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 445 gatgaattcatgagcattggcagctttagcagctt 479 |||||||||||| ||||| || ||||||||||||| Sbjct: 3421 gatgaattcatgcgcatttgcggctttagcagctt 3387
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcc 384 |||||||| |||| ||||||||||| |||||| | |||||| ||||| Sbjct: 2344598 gcatttttgagaatagctcgggcaaatgcaatacgctgtctttgtcc 2344552
>emb|AL079350.1|ATT30C3 Arabidopsis thaliana DNA chromosome 4, BAC clone T30C3 (ESSA project) Length = 77793 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 429 cctgtggaagtgagatgatgaattcatgagcattggcagcttt 471 |||| ||||||||||| || || |||||||| ||||||||||| Sbjct: 59874 cctgaggaagtgagattataaaatcatgagcgttggcagcttt 59916
>emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63 Length = 198777 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 429 cctgtggaagtgagatgatgaattcatgagcattggcagcttt 471 |||| ||||||||||| || || |||||||| ||||||||||| Sbjct: 92756 cctgaggaagtgagattataaaatcatgagcgttggcagcttt 92798
>emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2 (ESSA project) Length = 80386 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 429 cctgtggaagtgagatgatgaattcatgagcattggcagcttt 471 |||| ||||||||||| || || |||||||| ||||||||||| Sbjct: 62062 cctgaggaagtgagattataaaatcatgagcgttggcagcttt 62020
>gb|AF033022.1|MMMDR1A01 Mus musculus multidrug resistance P-glycoprotein-like (mdr1a) gene, exons 8-14 Length = 9545 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 8714 cgggcaatggcgattctctgtttctgtcccccact 8680
>dbj|AK050345.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730040C05 product:ATP-binding cassette, sub-family B (MDR/TAP), member 4, full insert sequence Length = 2792 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1771 cgggcaatggcgattctctgtttctgtcccccact 1737
>dbj|AK030328.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA, RIKEN full-length enriched library, clone:5031438E12 product:ATP-binding cassette, sub-family B (MDR/TAP), member 1B, full insert sequence Length = 3182 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1717 cgggcaatggcgattctctgtttctgtcccccact 1683
>dbj|AB107985.2| Legionella pneumophila DNA, partial sequence, strain: 80-045 Length = 25709 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcc 384 |||||||| |||| ||||||||||| |||||| | |||||| ||||| Sbjct: 2381 gcatttttgagaatagctcgggcaaatgcaatacgctgtctttgtcc 2335
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 307 acttgtagcctcatcaagtatta 329 ||||||||||||||||||||||| Sbjct: 656534 acttgtagcctcatcaagtatta 656512
>gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, complete sequence Length = 200945 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 114673 cgggcaatggcgattctctgtttctgtcccccact 114707 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 11378 cgggcaatggcgattctctgtttctgtcccccact 11412
>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) Length = 896449 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 338 gcatttttcagaagagctcgggcaattgcaattctctgtctctgtcc 384 ||||||||||||| ||| || ||||||||||||| ||| | |||||| Sbjct: 356921 gcatttttcagaatagcacgcgcaattgcaattcgctggcgctgtcc 356875
>gb|AC151474.2| Mus musculus BAC clone RP23-338P12 from 5, complete sequence Length = 226403 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 114223 cgggcaatggcgattctctgtttctgtcccccact 114257 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 10929 cgggcaatggcgattctctgtttctgtcccccact 10963
>gb|M14757.1|MUSMDR Mouse multidrug resistant protein mRNA, complete cds Length = 4298 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1734 cgggcaatggcgattctctgtttctgtcccccact 1700
>gb|M60042.1|CRUPGPIII C.griseus P-glycoprotein (isoform class III) mRNA, complete cds Length = 3905 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1643 cgggcaatggcgattctctgtttctgtcccccact 1609
>gb|AY864315.1| Mus musculus strain BALB/c multidrug resistance protein 1a (Abcb1a) mRNA, complete cds Length = 3831 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1616 cgggcaatggcgattctctgtttctgtcccccact 1582
>gb|M30697.1|MUSMDRAA Mouse multidrug resistance protein (MDR) mRNA, complete cds Length = 4356 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1767 cgggcaatggcgattctctgtttctgtcccccact 1733
>gb|J03398.1|MUSMDRA Mouse mdr gene encoding a multidrug resistance protein mRNA, complete cds Length = 4084 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1818 cgggcaatggcgattctctgtttctgtcccccact 1784
>gb|M33581.1|MUSMDR1A Mouse P-glycoprotein (mdr1a) mRNA, complete cds Length = 4924 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1752 cgggcaatggcgattctctgtttctgtcccccact 1718
>gb|M24417.1|MUSPGLY1A Mouse phosphoglycoprotein mdr1a mRNA, 3' end Length = 3682 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcccccact 390 |||||||| || ||||||||| ||||||||||||| Sbjct: 1102 cgggcaatggcgattctctgtttctgtcccccact 1068
>gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, complete sequence Length = 155046 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 ccttttaacatttgttacatgtattt 26 |||||||| ||||||||||||||||| Sbjct: 97550 ccttttaaaatttgttacatgtattt 97575
>emb|Z67882.1|CEF22E10 Caenorhabditis elegans Cosmid F22E10, complete sequence Length = 37527 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 359 gcaattgcaattctctgtctctgtccccca 388 |||||||| ||||||||| ||||||||||| Sbjct: 24684 gcaattgctattctctgtttctgtccccca 24713 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 352 agctcgggcaattgcaattctctgtctctg 381 ||||| ||||||||||||||||||| |||| Sbjct: 18265 agctctggcaattgcaattctctgtttctg 18294
>ref|NM_077728.1| Caenorhabditis elegans P-GlycoProtein related family member (pgp-15) (pgp-15) mRNA, complete cds Length = 3813 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 359 gcaattgcaattctctgtctctgtccccca 388 |||||||| ||||||||| ||||||||||| Sbjct: 3536 gcaattgctattctctgtttctgtccccca 3507
>ref|NM_077727.3| Caenorhabditis elegans P-GlycoProtein related family member (pgp-14) (pgp-14) mRNA, complete cds Length = 4283 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 352 agctcgggcaattgcaattctctgtctctg 381 ||||| ||||||||||||||||||| |||| Sbjct: 3739 agctctggcaattgcaattctctgtttctg 3710
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 297 tgtccagtgcacttgtagcctcatcaagta 326 ||||||||||||||||||| ||||| |||| Sbjct: 4969377 tgtccagtgcacttgtagcttcatccagta 4969406 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agtgcacttgtagcctcatc 321 |||||||||||||||||||| Sbjct: 4976899 agtgcacttgtagcctcatc 4976918
>gb|AC084601.1|CBRG43I20 Caenorhabditis briggsae cosmid G43I20, complete sequence Length = 41510 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 407 tctccaacaagagtatcatagccctg 432 ||||||||| |||||||||||||||| Sbjct: 27351 tctccaacatgagtatcatagccctg 27326
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 297 tgtccagtgcacttgtagcctcatcaagta 326 ||||||||||||||||||| ||||| |||| Sbjct: 40503 tgtccagtgcacttgtagcttcatccagta 40532 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agtgcacttgtagcctcatc 321 |||||||||||||||||||| Sbjct: 48025 agtgcacttgtagcctcatc 48044
>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence Length = 170850 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 ccttttaacatttgttacatgtattt 26 |||||||| ||||||||||||||||| Sbjct: 166162 ccttttaaaatttgttacatgtattt 166137
>gb|AY519858.1| Caenorhabditis elegans P-glycoprotein related (146.8 kD) (pgp-14) mRNA Length = 4301 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 352 agctcgggcaattgcaattctctgtctctg 381 ||||| ||||||||||||||||||| |||| Sbjct: 3734 agctctggcaattgcaattctctgtttctg 3705
>gb|AC147108.3| Mus musculus BAC clone RP24-70D19 from 13, complete sequence Length = 188893 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 370 tctctgtctctgtcccccactt 391 |||||||||||||||||||||| Sbjct: 64558 tctctgtctctgtcccccactt 64579
>ref|NM_102559.1| Arabidopsis thaliana ATPase, coupled to transmembrane movement of substances AT1G27940 mRNA, complete cds Length = 3738 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 296 gtgtccagtgcacttgtagcctcatcaag 324 |||||||| |||||||| ||||||||||| Sbjct: 3524 gtgtccagagcacttgttgcctcatcaag 3496 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 353 gctcgggcaattgcaattctctgtctctgtcc 384 ||||| ||||||||||| |||||| ||||||| Sbjct: 1568 gctcgagcaattgcaatcctctgtttctgtcc 1537
>gb|AC160543.13| Mus musculus chromosome 1, clone RP23-186L22, complete sequence Length = 212353 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tctctgtctctgtcccccact 390 ||||||||||||||||||||| Sbjct: 72919 tctctgtctctgtcccccact 72899
>gb|AC125253.9| Mus musculus chromosome 1, clone RP24-141C2, complete sequence Length = 144529 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tctctgtctctgtcccccact 390 ||||||||||||||||||||| Sbjct: 86299 tctctgtctctgtcccccact 86279
>ref|XM_870275.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family C, member 4 (LOC617941), partial mRNA Length = 345 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 ggtgctcaacctgtgggcgat 231 ||||||||||||||||||||| Sbjct: 321 ggtgctcaacctgtgggcgat 301
>gb|AC024866.2| Caenorhabditis elegans cosmid Y74C10AM, complete sequence Length = 8068 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 335 ggagcatttttcagaagagctcgggcaattgcaattctctg 375 ||||||||||| |||| ||||| |||||||||| |||||| Sbjct: 302 ggagcatttttaagaattgctcgagcaattgcaactctctg 342
>gb|AC024865.1| Caenorhabditis elegans cosmid Y74C10AL, complete sequence Length = 13085 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 335 ggagcatttttcagaagagctcgggcaattgcaattctctg 375 ||||||||||| |||| ||||| |||||||||| |||||| Sbjct: 9687 ggagcatttttaagaattgctcgagcaattgcaactctctg 9727
>gb|AF490976.1| Caenorhabditis elegans Y74C10AM.1b protein mRNA, complete cds Length = 1928 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 335 ggagcatttttcagaagagctcgggcaattgcaattctctg 375 ||||||||||| |||| ||||| |||||||||| |||||| Sbjct: 1204 ggagcatttttaagaattgctcgagcaattgcaactctctg 1164
>gb|AF490975.1| Caenorhabditis elegans ABC7 protein mRNA, complete cds Length = 2502 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 335 ggagcatttttcagaagagctcgggcaattgcaattctctg 375 ||||||||||| |||| ||||| |||||||||| |||||| Sbjct: 1778 ggagcatttttaagaattgctcgagcaattgcaactctctg 1738
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 305 gcacttgtagcctcatcaagtatta 329 ||||||||||| ||||||||||||| Sbjct: 1165157 gcacttgtagcttcatcaagtatta 1165133
>ref|NM_001026659.1| Caenorhabditis elegans Y74C10AR.3 (Y74C10AR.3) mRNA, complete cds Length = 2115 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 335 ggagcatttttcagaagagctcgggcaattgcaattctctg 375 ||||||||||| |||| ||||| |||||||||| |||||| Sbjct: 1772 ggagcatttttaagaattgctcgagcaattgcaactctctg 1732
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 356 cgggcaattgcaattctctgtctctgtcc 384 ||||||||||||| |||||| |||||||| Sbjct: 3930022 cgggcaattgcaactctctgcctctgtcc 3929994
>gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence Length = 126991 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 296 gtgtccagtgcacttgtagcctcatcaag 324 |||||||| |||||||| ||||||||||| Sbjct: 20125 gtgtccagagcacttgttgcctcatcaag 20153 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 353 gctcgggcaattgcaattctctgtctctgtcc 384 ||||| ||||||||||| |||||| ||||||| Sbjct: 22263 gctcgagcaattgcaatcctctgtttctgtcc 22294
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 gcaattgcaattctctgtctctgtccccc 387 |||||||||||||| ||||| |||||||| Sbjct: 234516 gcaattgcaattctttgtctttgtccccc 234544
>dbj|AP002043.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJI6 Length = 83912 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 445 gatgaattcatgagcattggcagctttagcagc 477 |||||| ||||||||||| || ||||||||||| Sbjct: 72571 gatgaaatcatgagcattcgcggctttagcagc 72603
>gb|AC132121.3| Mus musculus BAC clone RP24-62L21 from 13, complete sequence Length = 204277 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 ttgcaattctctgtctctgtc 383 ||||||||||||||||||||| Sbjct: 30788 ttgcaattctctgtctctgtc 30768
>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence Length = 206456 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tctctgtctctgtcccccac 389 |||||||||||||||||||| Sbjct: 22413 tctctgtctctgtcccccac 22394
>gb|AC137832.40| Medicago truncatula clone mth2-22i17, complete sequence Length = 127688 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 atgagcattggcagctttagcagc 477 ||||||||||| |||||||||||| Sbjct: 47824 atgagcattggaagctttagcagc 47801
>gb|AC141109.13| Medicago truncatula clone mth2-16p3, complete sequence Length = 116180 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 atgagcattggcagctttagcagc 477 ||||||||||| |||||||||||| Sbjct: 86916 atgagcattggaagctttagcagc 86893
>emb|AJ245999.1|BNA245999 Brassica napus H2A gene for Histone H2A Length = 971 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 ttggcagctttagcagcttt 480 |||||||||||||||||||| Sbjct: 840 ttggcagctttagcagcttt 821
>gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, complete sequence Length = 180944 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 caagttccatgatcttgccatctg 179 |||||| ||||||||||||||||| Sbjct: 168639 caagttacatgatcttgccatctg 168616
>gb|AC022118.5| Homo sapiens chromosome 5 clone CTC-548H10, complete sequence Length = 104094 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aaaatgtgtggttactcaaa 87 |||||||||||||||||||| Sbjct: 26348 aaaatgtgtggttactcaaa 26367
>gb|AY171574.1|AY171569S6 Petromyzon marinus ABCB9-like TAP-family protein (ABCB9) gene, exons 11, 12, and complete cds Length = 1639 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 gctcaacctgtgggcgatcaccaa 237 |||||||| ||||||||||||||| Sbjct: 1225 gctcaaccggtgggcgatcaccaa 1202
>gb|AY171568.1| Petromyzon marinus ABCB9-like TAP-family protein (ABCB9) mRNA, partial cds Length = 2315 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 gctcaacctgtgggcgatcaccaa 237 |||||||| ||||||||||||||| Sbjct: 2286 gctcaaccggtgggcgatcaccaa 2263
>gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence Length = 209211 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 463 ggcagctttagcagctttgattat 486 |||||||||||||||||| ||||| Sbjct: 121680 ggcagctttagcagctttcattat 121703
>gb|AY542234.1| Uncultured low G+C Gram-positive bacterium clone GoM IDB-40 16S ribosomal RNA gene, partial sequence Length = 760 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tgtagcctcatcaagtatta 329 |||||||||||||||||||| Sbjct: 164 tgtagcctcatcaagtatta 145
>gb|AY542231.1| Uncultured low G+C Gram-positive bacterium clone GoM IDB-30 16S ribosomal RNA gene, partial sequence Length = 761 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tgtagcctcatcaagtatta 329 |||||||||||||||||||| Sbjct: 168 tgtagcctcatcaagtatta 149
>gb|AY542226.1| Uncultured low G+C Gram-positive bacterium clone GoM IDB-10 16S ribosomal RNA gene, partial sequence Length = 759 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tgtagcctcatcaagtatta 329 |||||||||||||||||||| Sbjct: 165 tgtagcctcatcaagtatta 146
>gb|AY542212.1| Uncultured low G+C Gram-positive bacterium clone GoM HDB-46 16S ribosomal RNA gene, partial sequence Length = 418 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tgtagcctcatcaagtatta 329 |||||||||||||||||||| Sbjct: 92 tgtagcctcatcaagtatta 73
>gb|AY542206.1| Uncultured low G+C Gram-positive bacterium clone GoM HDB-21 16S ribosomal RNA gene, partial sequence Length = 1337 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 tgtagcctcatcaagtatta 329 |||||||||||||||||||| Sbjct: 1139 tgtagcctcatcaagtatta 1158
>gb|AY542203.1| Uncultured low G+C Gram-positive bacterium clone GoM HDB-18 16S ribosomal RNA gene, partial sequence Length = 682 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tgtagcctcatcaagtatta 329 |||||||||||||||||||| Sbjct: 167 tgtagcctcatcaagtatta 148
>gb|AC012161.8|AC012161 Drosophila melanogaster, chromosome X, region 16B-16D, BAC clone BACR01I22, complete sequence Length = 173281 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttacatgtatttcgcaaacc 34 |||||||||||||||||||| Sbjct: 69237 ttacatgtatttcgcaaacc 69218
>gb|AC011703.8|AC011703 Drosophila melanogaster, chromosome X, region 16A-16B, BAC clone BACR35P18, complete sequence Length = 163307 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttacatgtatttcgcaaacc 34 |||||||||||||||||||| Sbjct: 105571 ttacatgtatttcgcaaacc 105552
>gb|AC011702.10|AC011702 Drosophila melanogaster, chromosome X, region 15F-16A, BAC clone BACR42I14, complete sequence Length = 167688 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttacatgtatttcgcaaacc 34 |||||||||||||||||||| Sbjct: 119218 ttacatgtatttcgcaaacc 119199
>ref|XM_625119.1| PREDICTED: Apis mellifera similar to ATP-binding cassette, sub-family B, member 10 (LOC552744), mRNA Length = 2384 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 359 gcaattgcaattctctgtctctgtcccccact 390 ||||| |||| ||||||||||||||| ||||| Sbjct: 2000 gcaatagcaactctctgtctctgtcctccact 1969
>gb|AC022710.10|AC022710 Homo sapiens chromosome 15, clone RP11-90E5, complete sequence Length = 186517 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 caagttccatgatcttgccatctg 179 |||||| ||||||||||||||||| Sbjct: 809 caagttacatgatcttgccatctg 786
>ref|NM_173318.1| Rattus norvegicus putative pheromone receptor (Go-VN4) (LOC286984), mRNA Length = 4450 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ttttaacatttgttacatgt 22 |||||||||||||||||||| Sbjct: 3123 ttttaacatttgttacatgt 3104
>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17 (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene, complete sequence Length = 371157 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 caagttccatgatcttgccatctg 179 |||||| ||||||||||||||||| Sbjct: 313234 caagttacatgatcttgccatctg 313257
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 356 cgggcaattgcaattctctgtctctgtccccc 387 ||||||||| |||||| |||||||||||||| Sbjct: 3748458 cgggcaattccaattcgttgtctctgtccccc 3748489
>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete sequence Length = 302073 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttacatgtatttcgcaaacc 34 |||||||||||||||||||| Sbjct: 140414 ttacatgtatttcgcaaacc 140395
>gb|AF016181.1|AF016181 Rattus norvegicus putative pheromone receptor (Go-VN4) mRNA, complete cds Length = 4450 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ttttaacatttgttacatgt 22 |||||||||||||||||||| Sbjct: 3123 ttttaacatttgttacatgt 3104
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 353 gctcgggcaattgcaattctctgtctctgtcc 384 ||||||||||| ||||||| |||||| ||||| Sbjct: 1972821 gctcgggcaatggcaattcgctgtctttgtcc 1972790
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttggcgaccaattccgcatg 150 |||||||||||||||||||| Sbjct: 3742295 ttggcgaccaattccgcatg 3742276
>dbj|AP004907.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11D15, TM0065, complete sequence Length = 115046 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 atgaattcatgagcattggcagct 469 ||||||||||||||||| |||||| Sbjct: 24241 atgaattcatgagcatttgcagct 24218
>emb|AL928601.6| Mouse DNA sequence from clone RP23-88B5 on chromosome 11, complete sequence Length = 55129 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 tctctgtctctgtcccccac 389 |||||||||||||||||||| Sbjct: 20641 tctctgtctctgtcccccac 20660 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,598,648 Number of Sequences: 3902068 Number of extensions: 4598648 Number of successful extensions: 168783 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 168219 Number of HSP's gapped (non-prelim): 560 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
