>YJIA_ECOLI (P24203) Hypothetical protein yjiA|
          Length = 318

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 30/90 (33%), Positives = 49/90 (54%)
 Frame = -1

Query: 596 ASVSIVCEGEMDLEKADMWLGNLLLARSDDIYRMKGLLSVSGMPQRFVFQGVHDIFQGSP 417
           +S+ +  +  +D+ +    + NLLL  +D + R KG+L + G P R +FQGV  ++    
Sbjct: 225 SSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADW 284

Query: 416 DRMWEPNEPRINKIVFIGRNLNREELETGF 327
           DR W   +P  + +VFIG  L  EE+   F
Sbjct: 285 DRPWGDEKPH-STMVFIGIQLPEEEIRAAF 313

>COBW_PSEDE (P29937) Protein cobW|
          Length = 353

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 509 DIYRMKGLLSVSGMPQRFVFQGVHDIFQGSPDRMWEPNEPRINKIVFIG 363
           D+ R+KG   V G P R + Q V        DR W   E R  ++V IG
Sbjct: 288 DVLRLKGFADVPGKPMRLLIQAVGARIDQYYDRAWGAGEKRGTRLVVIG 336

>YN8H_YEAST (P53729) Hypothetical 48.1 kDa protein in SEC12-SSK2 intergenic|
           region
          Length = 429

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 518 RSDDIYRMKGLLSVSGM-PQRFVFQGVHDIFQGSPDRMWEPNEPRINKIVFIGRNLNREE 342
           R  ++ R KGL+ + G  P   V QGV D +   P +    N+    KIV IG+ L +E 
Sbjct: 362 RDWEVQRTKGLILIEGENPIARVIQGVRDTYDVFPGKYDGSNKEC--KIVLIGKYLEKES 419

Query: 341 LE 336
           +E
Sbjct: 420 IE 421

>ZA2G_RAT (Q63678) Zinc-alpha-2-glycoprotein precursor|
           (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP)
          Length = 296

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 523 WHAVMIYTG*KGCFLSVECPNASSFRECMTFSRDHLTGCGSPTNRASTRL 374
           W A  +Y      +L  ECP  +  ++ +T+SR HL     PT + ++R+
Sbjct: 163 WEAEKVYVQRAKAYLEEECP--TMLKKYLTYSRSHLDRTDPPTVKITSRV 210

>SLIK4_MOUSE (Q810B8) SLIT and NTRK-like protein 4 precursor|
          Length = 837

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 241 STPHAHARRRNGRSLGSMA*AYFFSRQSLKPVS-SSSRFRFLPMNTILLMRGSLGSHILS 417
           S P+      N   L S+   Y FS   L  ++  +++F +LP++ +L    SL    L 
Sbjct: 471 SMPNLQLLYLNNNLLKSLP-VYIFSGAPLARLNLRNNKFMYLPVSGVLDQLQSLTQIDLE 529

Query: 418 GDPWKMSCTP*KTKRW 465
           G+PW  +C     K W
Sbjct: 530 GNPWDCTCDLVALKLW 545

>SLIK4_HUMAN (Q8IW52) SLIT and NTRK-like protein 4 precursor|
          Length = 837

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 241 STPHAHARRRNGRSLGSMA*AYFFSRQSLKPVS-SSSRFRFLPMNTILLMRGSLGSHILS 417
           S P+      N   L S+   Y FS   L  ++  +++F +LP++ +L    SL    L 
Sbjct: 471 SMPNLQLLYLNNNLLKSLP-VYIFSGAPLARLNLRNNKFMYLPVSGVLDQLQSLTQIDLE 529

Query: 418 GDPWKMSCTP*KTKRW 465
           G+PW  +C     K W
Sbjct: 530 GNPWDCTCDLVALKLW 545

>SLIK1_PONPY (Q5RAC4) SLIT and NTRK-like protein 1 precursor|
          Length = 696

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 310 FSRQSLKPVS-SSSRFRFLPMNTILLMRGSLGSHILSGDPWKMSCTP*KTKRW 465
           F+  SL  +S  ++ F +LP+  +L    S+    L G+PW+ SCT    K+W
Sbjct: 491 FAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWEYSCTIVPFKQW 543

>SLIK1_MOUSE (Q810C1) SLIT and NTRK-like protein 1 precursor|
          Length = 696

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 310 FSRQSLKPVS-SSSRFRFLPMNTILLMRGSLGSHILSGDPWKMSCTP*KTKRW 465
           F+  SL  +S  ++ F +LP+  +L    S+    L G+PW+ SCT    K+W
Sbjct: 491 FAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQW 543

>SLIK1_HUMAN (Q96PX8) SLIT and NTRK-like protein 1 precursor (Leucine-rich|
           repeat-containing protein 12)
          Length = 696

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 310 FSRQSLKPVS-SSSRFRFLPMNTILLMRGSLGSHILSGDPWKMSCTP*KTKRW 465
           F+  SL  +S  ++ F +LP+  +L    S+    L G+PW+ SCT    K+W
Sbjct: 491 FAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQW 543

>TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 702

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 390 AHQQDCVHRQEPEPRRAGDGLQGLPAEEVGLGHRPQASSVSPT 262
           A ++ C    +PEP R  +   G P     LG  P   S SPT
Sbjct: 341 AEEKSCAADSDPEPERLSEERAGAP-----LGRSPAPDSASPT 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,435,572
Number of Sequences: 219361
Number of extensions: 2057036
Number of successful extensions: 5242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5236
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)