>SYM_BIFLO (P59076) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 621

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 455 NSFVTSNQLWFRRQNSNWRIGTILHVTANSSTDGNHLW--FRRHNRTGRWRLSPLLGVGA 628
           N ++++ + W + ++   R+GT+LHV A + +D NHL   F  H+    W      G  +
Sbjct: 471 NKYISATEPW-KIKDDQARLGTVLHVAAQAVSDANHLLAPFLPHSAQKVWEALGGTGTFS 529

Query: 629 AIEHAERLPDL 661
            +   + + DL
Sbjct: 530 PLPELKEVEDL 540

>RM32_DROME (Q9V9Z1) 39S ribosomal protein L32, mitochondrial precursor|
          Length = 195

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = -1

Query: 406 KRKIGAA--NPGPEDAAELLRMCLQCGIPKTYSHAQGMVCPVCNDRPVQAKEPEKKK--- 242
           KRK G    N  P      LR CLQCG    + H  G++CP C  + ++  E  + K   
Sbjct: 73  KRKFGYPEYNWKPLREKRNLRSCLQCG----HDHEMGVLCPFCYQKVLKETELMQSKIQE 128

Query: 241 --GSAVKDKEKVKRMRGQSSHAS 179
             G    DKE +    G+ +  S
Sbjct: 129 TLGLDPVDKEVIVLYEGEKAEQS 151

>SECF_MYCTU (Q50635) Protein-export membrane protein secF|
          Length = 442

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 25/84 (29%), Positives = 33/84 (39%)
 Frame = -1

Query: 517 ANPPVAVLSAKPQLVAGHERVSSDMKNGGNPPGSVDGKRKIGAANPGPEDAAELLRMCLQ 338
           A P +  L  + +LV  H R     +N G+P GS D     G   P   D   L+ +  Q
Sbjct: 345 ATPLLVTLRERTELVRNHTRRVLKRRNSGSPAGSEDASTD-GGEQPAAADEQSLVGI-TQ 402

Query: 337 CGIPKTYSHAQGMVCPVCNDRPVQ 266
                    AQG   P    RPV+
Sbjct: 403 ASSQSAPRAAQGSSKPAPGARPVR 426

>ADCY4_HUMAN (Q8NFM4) Adenylate cyclase type 4 (EC 4.6.1.1) (Adenylate cyclase|
           type IV) (ATP pyrophosphate-lyase 4) (Adenylyl cyclase
           4)
          Length = 1077

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 505 LEDWHHSSRHC*LVHGWQPSVVSPPQPHREVAAFSSAWS 621
           LE W  +     L HG  P   S P P + +A+FS+ WS
Sbjct: 482 LESWGAAKPFAHLSHGDSPVSTSTPLPEKTLASFSTQWS 520

>PDXK_SALTY (P40192) Pyridoxine kinase (EC 2.7.1.35) (Pyridoxal kinase)|
           (Vitamin B6 kinase) (Pyridoxamine kinase) (PN/PL/PM
           kinase)
          Length = 288

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = -1

Query: 505 VAVLSAKPQLVAGHERVSSDMKNGGN------PPGSVDGKRKIGAANPGPEDAAELLRMC 344
           VAV++A+   V  H RV++++K  G+        G V GK+   AA    +   E++   
Sbjct: 212 VAVVTAQVVEVFAHPRVATELKGTGDLFCAELVSGIVQGKKLTTAAKDAAQRVLEVMTWT 271

Query: 343 LQCG 332
            QCG
Sbjct: 272 QQCG 275

>PDXK_SALTI (Q8Z4W1) Pyridoxine kinase (EC 2.7.1.35) (Pyridoxal kinase)|
           (Vitamin B6 kinase) (Pyridoxamine kinase) (PN/PL/PM
           kinase)
          Length = 288

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = -1

Query: 505 VAVLSAKPQLVAGHERVSSDMKNGGN------PPGSVDGKRKIGAANPGPEDAAELLRMC 344
           VAV++A+   V  H RV++++K  G+        G V GK+   AA    +   E++   
Sbjct: 212 VAVVTAQVVEVFAHPRVATELKGTGDLFCAELVSGIVQGKKLTTAAKDAAQRVLEVMTWT 271

Query: 343 LQCG 332
            QCG
Sbjct: 272 QQCG 275

>ORA_PLAFN (P16405) Octapeptide-repeat antigen (ORA) (Fragment)|
          Length = 701

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 195 NRHMHRGRARLRWXCGNSSTNWCQQDCWC 109
           N   + G+ RL    GN+STNW   DC C
Sbjct: 24  NEEKNNGKFRLLGLYGNNSTNWLITDCAC 52

>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = -1

Query: 487  KPQLVAGHERVSSDMKNGGNPPGSVDGKR----KIGAANPGPEDAAELLRMCLQCGIPKT 320
            +P L+A H+R SS  + GG    S  GK+    ++G A+  PE            G P  
Sbjct: 1440 QPLLLAPHDRASST-QGGGEDNSSGGGKKPKTEELGPASQPPE------------GRP-- 1484

Query: 319  YSHAQGMVCPVCNDRPVQAKEPEKKKGSAVKDKEKVKRMRGQSSHAS 179
                       C  +    K+P +   S+   ++++ R RG+++HAS
Sbjct: 1485 -----------CQPQTRAQKQPGQASYSSYSKRKRLSRGRGKTAHAS 1520

>Y1866_MYCBO (P0A5F6) Hypothetical protein Mb1866c|
          Length = 628

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +2

Query: 500 SNWRIGTILHVTANS----STDGNHLWFRRHNRTGRWRLSPLLGV 622
           S W  G   H         ST G+HL     N TG WR+ PL G+
Sbjct: 318 SGWFDGGYAHAAIKRFLTVSTPGSHLILGPWNHTGGWRVDPLRGL 362

>Y1835_MYCTU (P0A5F5) Hypothetical protein Rv1835c/MT1883|
          Length = 628

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +2

Query: 500 SNWRIGTILHVTANS----STDGNHLWFRRHNRTGRWRLSPLLGV 622
           S W  G   H         ST G+HL     N TG WR+ PL G+
Sbjct: 318 SGWFDGGYAHAAIKRFLTVSTPGSHLILGPWNHTGGWRVDPLRGL 362

>RPOB_MYCGA (P47715) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1390

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
 Frame = +2

Query: 515 GTILHVTA---------NSSTDGNHLWFRRHNRTGRWRLSPLLGVGAAIEHAERLPD 658
           GT+ +V A         N STD N L F + N+   +  SP++ VG  IE  + L D
Sbjct: 815 GTVTYVDASKITVKGEDNKSTDYNLLKFVKSNKNTCYNQSPIVAVGDKIETNQALAD 871

>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 446

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -1

Query: 391 AANPGPEDAAELLRMCLQCGIPKTYSHA--QGMVCPVCNDRPVQAKEPEKKKGSAVKDKE 218
           A  P  ++  + ++ C  CG P   +    QG++C  C  R    K+  +KKG+    + 
Sbjct: 371 ALRPPRKEGKQGVQKCYYCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKGNPTSQQG 430

Query: 217 KVKR 206
             +R
Sbjct: 431 NSRR 434

>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1424

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 422 WRVATILHVTANSFVTSNQLWF-----RRQNSNWRIGTILHVTANSSTDGNHLW 568
           W +  +L +  + ++T+  + F     RRQN+N R GT++     S  +G   W
Sbjct: 189 WLLKNVL-IQGHLYITAKHMCFLSYLPRRQNANIRSGTLVKARKRSLREGTRYW 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,655,696
Number of Sequences: 219361
Number of extensions: 1953457
Number of successful extensions: 7228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7220
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)