ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1l16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072A10, full insert sequence Length = 4831 Score = 650 bits (328), Expect = 0.0 Identities = 553/628 (88%) Strand = Plus / Minus Query: 105 aatttctcctctaggtcacggaaacctcggtacacattatctgtttggttctgtgggaga 164 |||||||||||||| || |||||||||| || ||||| ||||||||||||| ||| || Sbjct: 4716 aatttctcctctagctcttggaaacctcgatagacattctctgtttggttctttggaagg 4657 Query: 165 ttcaatcgcctcacctctgtcatatacctgttcgccaaactaattattttatctcgaaca 224 | || ||||||||||| | |||||||| ||| ||||||||| |||||||||||||||| Sbjct: 4656 cttaaccgcctcacctcagccatataccggtttgccaaactacttattttatctcgaacg 4597 Query: 225 cccttctgcaaagaccctgtttgattcagcgagaatgttccatccaaaaagaatgaagcc 284 || | | ||||||| ||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 4596 ccttgatttaaagaccatgtttgattcagcgaaaatgttccatcaagaaagaatgaagcc 4537 Query: 285 ccggcagttgtggtgcctagcttatgtgcaatgactgacattccccattctcgaaggatt 344 || ||||||||||||||||| |||||||||||||| | ||| |||||||| ||||||||| Sbjct: 4536 ccagcagttgtggtgcctagtttatgtgcaatgacagtcatgccccattcacgaaggatt 4477 Query: 345 gcaagaactgatctcagaagccgcagcttcagagtaagtgagggcacgattgcgccattc 404 |||||||||||||||||||||||||||||||| | || ||||| || || |||||||| Sbjct: 4476 gcaagaactgatctcagaagccgcagcttcaggtttagggagggaacaatagcgccattt 4417 Query: 405 gataacagctgatcatacacagcaagcacaggctcagctagacctttacaagctccgaga 464 |||||||| ||||||||||| ||||||||||| |||| |||||||||||| ||||||||| Sbjct: 4416 gataacagttgatcatacacggcaagcacaggttcaggtagacctttacaggctccgaga 4357 Query: 465 agagcccttgcaacatcctcatcaccaactaattcctgtcctgaacttaatctatccagt 524 || || |||||||||||||| |||||||||||||| | |||||| ||||||||||||| | Sbjct: 4356 agggctcttgcaacatcctcgtcaccaactaattcttctcctgagcttaatctatccaat 4297 Query: 525 gcagccttctcaagatgaaggcatattatatccaaaggtaaacaagctccatctgcagga 584 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 4296 gcagccttctcgagatgaaggcatattatatccaatggtaaacaagcgccatctgcagga 4237 Query: 585 tctagttttgagccaactcttttcaccacagaacatgcttctgctaaaccacctcttgtc 644 || |||||||| || |||||| |||||||||||||||||||||| | |||||||||||| Sbjct: 4236 tcaagttttgaacctactcttctcaccacagaacatgcttctgcaacaccacctcttgta 4177 Query: 645 aatgtttggtcaaggagtctggcccaaatttcccggacaattttgctatcagcgtctcca 704 | || |||||||| || |||||||||||||| || |||||||| || ||||| |||||| Sbjct: 4176 agtgcctggtcaagaagcctggcccaaatttctcgaacaattttactgtcagcatctcca 4117 Query: 705 gagtaatttgcaaagttcagcatttcca 732 || |||||||||||||| |||||||||| Sbjct: 4116 gaataatttgcaaagttgagcatttcca 4089
>dbj|AK062221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B08, full insert sequence Length = 709 Score = 601 bits (303), Expect = e-168 Identities = 525/599 (87%) Strand = Plus / Minus Query: 105 aatttctcctctaggtcacggaaacctcggtacacattatctgtttggttctgtgggaga 164 |||||||||||||| || |||||||||| || ||||| ||||||||||||| ||| || Sbjct: 599 aatttctcctctagctcttggaaacctcgatagacattctctgtttggttctttggaagg 540 Query: 165 ttcaatcgcctcacctctgtcatatacctgttcgccaaactaattattttatctcgaaca 224 | || ||||||||||| | |||||||| ||| ||||||||| |||||||||||||||| Sbjct: 539 cttaaccgcctcacctcagccatataccggtttgccaaactacttattttatctcgaacg 480 Query: 225 cccttctgcaaagaccctgtttgattcagcgagaatgttccatccaaaaagaatgaagcc 284 || | | ||||||| ||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 479 ccttgatttaaagaccatgtttgattcagcgaaaatgttccatcaagaaagaatgaagcc 420 Query: 285 ccggcagttgtggtgcctagcttatgtgcaatgactgacattccccattctcgaaggatt 344 || ||||||||||||||||| |||||||||||||| | ||| |||||||| ||||||||| Sbjct: 419 ccagcagttgtggtgcctagtttatgtgcaatgacagtcatgccccattcacgaaggatt 360 Query: 345 gcaagaactgatctcagaagccgcagcttcagagtaagtgagggcacgattgcgccattc 404 |||||||||||||||||||||||||||||||| | || ||||| || || |||||||| Sbjct: 359 gcaagaactgatctcagaagccgcagcttcaggtttagggagggaacaatagcgccattt 300 Query: 405 gataacagctgatcatacacagcaagcacaggctcagctagacctttacaagctccgaga 464 |||||||| ||||||||||| ||||||||||| |||| |||||||||||| ||||||||| Sbjct: 299 gataacagttgatcatacacggcaagcacaggttcaggtagacctttacaggctccgaga 240 Query: 465 agagcccttgcaacatcctcatcaccaactaattcctgtcctgaacttaatctatccagt 524 || || |||||||||||||| |||||||||||||| | |||||| ||||||||||||| | Sbjct: 239 agggctcttgcaacatcctcgtcaccaactaattcttctcctgagcttaatctatccaat 180 Query: 525 gcagccttctcaagatgaaggcatattatatccaaaggtaaacaagctccatctgcagga 584 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 179 gcagccttctcgagatgaaggcatattatatccaatggtaaacaagcgccatctgcagga 120 Query: 585 tctagttttgagccaactcttttcaccacagaacatgcttctgctaaaccacctcttgtc 644 || |||||||| || |||||| |||||||||||||||||||||| | |||||||||||| Sbjct: 119 tcaagttttgaacctactcttctcaccacagaacatgcttctgcaacaccacctcttgta 60 Query: 645 aatgtttggtcaaggagtctggcccaaatttcccggacaattttgctatcagcgtctcc 703 | || |||||||| || |||||||||| ||| || |||||||| || ||||| ||||| Sbjct: 59 agtgcctggtcaagaagcctggcccaaacttctcgaacaattttactgtcagcatctcc 1
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 359 bits (181), Expect = 8e-96 Identities = 295/333 (88%) Strand = Plus / Minus Query: 189 tacctgttcgccaaactaattattttatctcgaacacccttctgcaaagaccctgtttga 248 |||| ||| ||||||||| |||||||||||||||| || | | ||||||| ||||||| Sbjct: 11367871 taccggtttgccaaactacttattttatctcgaacgccttgatttaaagaccatgtttga 11367812 Query: 249 ttcagcgagaatgttccatccaaaaagaatgaagccccggcagttgtggtgcctagctta 308 |||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||| ||| Sbjct: 11367811 ttcagcgaaaatgttccatcaagaaagaatgaagccccagcagttgtggtgcctagttta 11367752 Query: 309 tgtgcaatgactgacattccccattctcgaaggattgcaagaactgatctcagaagccgc 368 ||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 11367751 tgtgcaatgacagtcatgccccattcacgaaggattgcaagaactgatctcagaagccgc 11367692 Query: 369 agcttcagagtaagtgagggcacgattgcgccattcgataacagctgatcatacacagca 428 |||||||| | || ||||| || || |||||||| |||||||| ||||||||||| ||| Sbjct: 11367691 agcttcaggtttagggagggaacaatagcgccatttgataacagttgatcatacacggca 11367632 Query: 429 agcacaggctcagctagacctttacaagctccgagaagagcccttgcaacatcctcatca 488 |||||||| |||| |||||||||||| ||||||||||| || |||||||||||||| ||| Sbjct: 11367631 agcacaggttcaggtagacctttacaggctccgagaagggctcttgcaacatcctcgtca 11367572 Query: 489 ccaactaattcctgtcctgaacttaatctatcc 521 ||||||||||| | |||||| |||||||||||| Sbjct: 11367571 ccaactaattcttctcctgagcttaatctatcc 11367539 Score = 240 bits (121), Expect = 5e-60 Identities = 187/209 (89%) Strand = Plus / Minus Query: 524 tgcagccttctcaagatgaaggcatattatatccaaaggtaaacaagctccatctgcagg 583 |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 11367427 tgcagccttctcgagatgaaggcatattatatccaatggtaaacaagcgccatctgcagg 11367368 Query: 584 atctagttttgagccaactcttttcaccacagaacatgcttctgctaaaccacctcttgt 643 ||| |||||||| || |||||| |||||||||||||||||||||| | |||||||||||| Sbjct: 11367367 atcaagttttgaacctactcttctcaccacagaacatgcttctgcaacaccacctcttgt 11367308 Query: 644 caatgtttggtcaaggagtctggcccaaatttcccggacaattttgctatcagcgtctcc 703 | || |||||||| || |||||||||||||| || |||||||| || ||||| ||||| Sbjct: 11367307 aagtgcctggtcaagaagcctggcccaaatttctcgaacaattttactgtcagcatctcc 11367248 Query: 704 agagtaatttgcaaagttcagcatttcca 732 ||| |||||||||||||| |||||||||| Sbjct: 11367247 agaataatttgcaaagttgagcatttcca 11367219 Score = 67.9 bits (34), Expect = 4e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 105 aatttctcctctaggtcacggaaacctcggtacacattatctgtttggttctgtgggaga 164 |||||||||||||| || |||||||||| || ||||| ||||||||||||| ||| || Sbjct: 11368427 aatttctcctctagctcttggaaacctcgatagacattctctgtttggttctttggaagg 11368368 Query: 165 ttcaatcgcctcacctctgtcatatacctg 194 | || ||||||||||| | |||||||||| Sbjct: 11368367 cttaaccgcctcacctcagccatatacctg 11368338
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 359 bits (181), Expect = 8e-96 Identities = 295/333 (88%) Strand = Plus / Minus Query: 189 tacctgttcgccaaactaattattttatctcgaacacccttctgcaaagaccctgtttga 248 |||| ||| ||||||||| |||||||||||||||| || | | ||||||| ||||||| Sbjct: 55580 taccggtttgccaaactacttattttatctcgaacgccttgatttaaagaccatgtttga 55521 Query: 249 ttcagcgagaatgttccatccaaaaagaatgaagccccggcagttgtggtgcctagctta 308 |||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||| ||| Sbjct: 55520 ttcagcgaaaatgttccatcaagaaagaatgaagccccagcagttgtggtgcctagttta 55461 Query: 309 tgtgcaatgactgacattccccattctcgaaggattgcaagaactgatctcagaagccgc 368 ||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 55460 tgtgcaatgacagtcatgccccattcacgaaggattgcaagaactgatctcagaagccgc 55401 Query: 369 agcttcagagtaagtgagggcacgattgcgccattcgataacagctgatcatacacagca 428 |||||||| | || ||||| || || |||||||| |||||||| ||||||||||| ||| Sbjct: 55400 agcttcaggtttagggagggaacaatagcgccatttgataacagttgatcatacacggca 55341 Query: 429 agcacaggctcagctagacctttacaagctccgagaagagcccttgcaacatcctcatca 488 |||||||| |||| |||||||||||| ||||||||||| || |||||||||||||| ||| Sbjct: 55340 agcacaggttcaggtagacctttacaggctccgagaagggctcttgcaacatcctcgtca 55281 Query: 489 ccaactaattcctgtcctgaacttaatctatcc 521 ||||||||||| | |||||| |||||||||||| Sbjct: 55280 ccaactaattcttctcctgagcttaatctatcc 55248 Score = 240 bits (121), Expect = 5e-60 Identities = 187/209 (89%) Strand = Plus / Minus Query: 524 tgcagccttctcaagatgaaggcatattatatccaaaggtaaacaagctccatctgcagg 583 |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 55136 tgcagccttctcgagatgaaggcatattatatccaatggtaaacaagcgccatctgcagg 55077 Query: 584 atctagttttgagccaactcttttcaccacagaacatgcttctgctaaaccacctcttgt 643 ||| |||||||| || |||||| |||||||||||||||||||||| | |||||||||||| Sbjct: 55076 atcaagttttgaacctactcttctcaccacagaacatgcttctgcaacaccacctcttgt 55017 Query: 644 caatgtttggtcaaggagtctggcccaaatttcccggacaattttgctatcagcgtctcc 703 | || |||||||| || |||||||||||||| || |||||||| || ||||| ||||| Sbjct: 55016 aagtgcctggtcaagaagcctggcccaaatttctcgaacaattttactgtcagcatctcc 54957 Query: 704 agagtaatttgcaaagttcagcatttcca 732 ||| |||||||||||||| |||||||||| Sbjct: 54956 agaataatttgcaaagttgagcatttcca 54928 Score = 67.9 bits (34), Expect = 4e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 105 aatttctcctctaggtcacggaaacctcggtacacattatctgtttggttctgtgggaga 164 |||||||||||||| || |||||||||| || ||||| ||||||||||||| ||| || Sbjct: 56136 aatttctcctctagctcttggaaacctcgatagacattctctgtttggttctttggaagg 56077 Query: 165 ttcaatcgcctcacctctgtcatatacctg 194 | || ||||||||||| | |||||||||| Sbjct: 56076 cttaaccgcctcacctcagccatatacctg 56047
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 248 bits (125), Expect = 2e-62 Identities = 264/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Minus Query: 189 tacctgttcgccaaactaattattttatctcgaacacccttctgcaaagaccctgtttga 248 |||| ||| |||||||||||||||||||| || | || | | ||||||| ||||||| Sbjct: 6456098 taccagtttgccaaactaattattttatcccggatgccttgatttaaagaccatgtttga 6456039 Query: 249 ttcagcgagaatgttccatccaaaaagaatgaagccccggcagttgtggtgcctagctta 308 ||| | || ||||||||||| | ||||||||||||||| ||||||||||||||||| ||| Sbjct: 6456038 ttcggtgaaaatgttccatcaagaaagaatgaagccccagcagttgtggtgcctagttta 6455979 Query: 309 tgtgcaatgactgacattccccattctcgaaggattgcaagaactgatctcagaagccgc 368 ||||||||||| | ||| ||| |||| ||||||||| ||| |||||||||||||||| | Sbjct: 6455978 tgtgcaatgacagtcatgccc-attcacgaaggattaaaaggactgatctcagaagccac 6455920 Query: 369 agcttcagagtaagtgagggcacgattgcgccattcgataacagctgatcatacacagca 428 | |||||| | || |||||||| || |||||||| |||||||| ||||||||||| ||| Sbjct: 6455919 accttcaggtttagggagggcacaatagcgccatttgataacagttgatcatacacggca 6455860 Query: 429 agcacaggctcagctagacctttacaagctccgagaagagcccttgcaacatcctcatca 488 |||||||| |||| |||||||||||| ||||| ||||| || |||||||||||||| ||| Sbjct: 6455859 agcacaggttcaggtagacctttacaggctccaagaagggctcttgcaacatcctcgtca 6455800 Query: 489 ccaactaat 497 ||||||||| Sbjct: 6455799 ccaactaat 6455791 Score = 186 bits (94), Expect = 7e-44 Identities = 175/202 (86%), Gaps = 5/202 (2%) Strand = Plus / Minus Query: 520 ccagtgcagccttctcaagatgaaggcatattatatccaaaggtaaacaagctccatctg 579 |||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 6455664 ccagtgcagccttctcgagatgaaggcatattatatccaatggtaaacaagagccatctg 6455605 Query: 580 caggatctagttttgagccaactcttttcaccacagaacatgcttctgctaaaccacctc 639 ||||||| |||||||| || |||||| |||||||||||||||||||||| | |||||||| Sbjct: 6455604 caggatcaagttttgaacctactcttctcaccacagaacatgcttctgcaacaccacctc 6455545 Query: 640 ttgtcaatgtttggtcaaggagtctggcccaaatttcccggacaattttgctatcagcgt 699 |||| ||| ||||||| |||||||||||||| | | |||||| || ||||| | Sbjct: 6455544 ttgt-----actggccaaggagcctggcccaaatttctcaaataattttactgtcagcat 6455490 Query: 700 ctccagagtaatttgcaaagtt 721 ||||||| |||||||||||||| Sbjct: 6455489 ctccagaataatttgcaaagtt 6455468
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 248 bits (125), Expect = 2e-62 Identities = 264/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Minus Query: 189 tacctgttcgccaaactaattattttatctcgaacacccttctgcaaagaccctgtttga 248 |||| ||| |||||||||||||||||||| || | || | | ||||||| ||||||| Sbjct: 136224 taccagtttgccaaactaattattttatcccggatgccttgatttaaagaccatgtttga 136165 Query: 249 ttcagcgagaatgttccatccaaaaagaatgaagccccggcagttgtggtgcctagctta 308 ||| | || ||||||||||| | ||||||||||||||| ||||||||||||||||| ||| Sbjct: 136164 ttcggtgaaaatgttccatcaagaaagaatgaagccccagcagttgtggtgcctagttta 136105 Query: 309 tgtgcaatgactgacattccccattctcgaaggattgcaagaactgatctcagaagccgc 368 ||||||||||| | ||| ||| |||| ||||||||| ||| |||||||||||||||| | Sbjct: 136104 tgtgcaatgacagtcatgccc-attcacgaaggattaaaaggactgatctcagaagccac 136046 Query: 369 agcttcagagtaagtgagggcacgattgcgccattcgataacagctgatcatacacagca 428 | |||||| | || |||||||| || |||||||| |||||||| ||||||||||| ||| Sbjct: 136045 accttcaggtttagggagggcacaatagcgccatttgataacagttgatcatacacggca 135986 Query: 429 agcacaggctcagctagacctttacaagctccgagaagagcccttgcaacatcctcatca 488 |||||||| |||| |||||||||||| ||||| ||||| || |||||||||||||| ||| Sbjct: 135985 agcacaggttcaggtagacctttacaggctccaagaagggctcttgcaacatcctcgtca 135926 Query: 489 ccaactaat 497 ||||||||| Sbjct: 135925 ccaactaat 135917 Score = 186 bits (94), Expect = 7e-44 Identities = 175/202 (86%), Gaps = 5/202 (2%) Strand = Plus / Minus Query: 520 ccagtgcagccttctcaagatgaaggcatattatatccaaaggtaaacaagctccatctg 579 |||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 135790 ccagtgcagccttctcgagatgaaggcatattatatccaatggtaaacaagagccatctg 135731 Query: 580 caggatctagttttgagccaactcttttcaccacagaacatgcttctgctaaaccacctc 639 ||||||| |||||||| || |||||| |||||||||||||||||||||| | |||||||| Sbjct: 135730 caggatcaagttttgaacctactcttctcaccacagaacatgcttctgcaacaccacctc 135671 Query: 640 ttgtcaatgtttggtcaaggagtctggcccaaatttcccggacaattttgctatcagcgt 699 |||| ||| ||||||| |||||||||||||| | | |||||| || ||||| | Sbjct: 135670 ttgt-----actggccaaggagcctggcccaaatttctcaaataattttactgtcagcat 135616 Query: 700 ctccagagtaatttgcaaagtt 721 ||||||| |||||||||||||| Sbjct: 135615 ctccagaataatttgcaaagtt 135594
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 248 bits (125), Expect = 2e-62 Identities = 264/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Minus Query: 189 tacctgttcgccaaactaattattttatctcgaacacccttctgcaaagaccctgtttga 248 |||| ||| |||||||||||||||||||| || | || | | ||||||| ||||||| Sbjct: 6455311 taccagtttgccaaactaattattttatcccggatgccttgatttaaagaccatgtttga 6455252 Query: 249 ttcagcgagaatgttccatccaaaaagaatgaagccccggcagttgtggtgcctagctta 308 ||| | || ||||||||||| | ||||||||||||||| ||||||||||||||||| ||| Sbjct: 6455251 ttcggtgaaaatgttccatcaagaaagaatgaagccccagcagttgtggtgcctagttta 6455192 Query: 309 tgtgcaatgactgacattccccattctcgaaggattgcaagaactgatctcagaagccgc 368 ||||||||||| | ||| ||| |||| ||||||||| ||| |||||||||||||||| | Sbjct: 6455191 tgtgcaatgacagtcatgccc-attcacgaaggattaaaaggactgatctcagaagccac 6455133 Query: 369 agcttcagagtaagtgagggcacgattgcgccattcgataacagctgatcatacacagca 428 | |||||| | || |||||||| || |||||||| |||||||| ||||||||||| ||| Sbjct: 6455132 accttcaggtttagggagggcacaatagcgccatttgataacagttgatcatacacggca 6455073 Query: 429 agcacaggctcagctagacctttacaagctccgagaagagcccttgcaacatcctcatca 488 |||||||| |||| |||||||||||| ||||| ||||| || |||||||||||||| ||| Sbjct: 6455072 agcacaggttcaggtagacctttacaggctccaagaagggctcttgcaacatcctcgtca 6455013 Query: 489 ccaactaat 497 ||||||||| Sbjct: 6455012 ccaactaat 6455004 Score = 186 bits (94), Expect = 7e-44 Identities = 175/202 (86%), Gaps = 5/202 (2%) Strand = Plus / Minus Query: 520 ccagtgcagccttctcaagatgaaggcatattatatccaaaggtaaacaagctccatctg 579 |||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 6454877 ccagtgcagccttctcgagatgaaggcatattatatccaatggtaaacaagagccatctg 6454818 Query: 580 caggatctagttttgagccaactcttttcaccacagaacatgcttctgctaaaccacctc 639 ||||||| |||||||| || |||||| |||||||||||||||||||||| | |||||||| Sbjct: 6454817 caggatcaagttttgaacctactcttctcaccacagaacatgcttctgcaacaccacctc 6454758 Query: 640 ttgtcaatgtttggtcaaggagtctggcccaaatttcccggacaattttgctatcagcgt 699 |||| ||| ||||||| |||||||||||||| | | |||||| || ||||| | Sbjct: 6454757 ttgt-----actggccaaggagcctggcccaaatttctcaaataattttactgtcagcat 6454703 Query: 700 ctccagagtaatttgcaaagtt 721 ||||||| |||||||||||||| Sbjct: 6454702 ctccagaataatttgcaaagtt 6454681
>ref|NM_187699.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1812 Score = 186 bits (94), Expect = 7e-44 Identities = 124/134 (92%) Strand = Plus / Minus Query: 510 cttaatctatccagtgcagccttctcaagatgaaggcatattatatccaaaggtaaacaa 569 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 1796 cttaatctatccagtgcagccttctcgagatgaaggcatattatatccaatggtaaacaa 1737 Query: 570 gctccatctgcaggatctagttttgagccaactcttttcaccacagaacatgcttctgct 629 | |||||||||||||| |||||||| || |||||| |||||||||||||||||||||| Sbjct: 1736 gagccatctgcaggatcaagttttgaacctactcttctcaccacagaacatgcttctgca 1677 Query: 630 aaaccacctcttgt 643 | |||||||||||| Sbjct: 1676 acaccacctcttgt 1663
>gb|AY111315.1| Zea mays CL3160_1 mRNA sequence Length = 815 Score = 147 bits (74), Expect = 6e-32 Identities = 153/178 (85%), Gaps = 1/178 (0%) Strand = Plus / Plus Query: 105 aatttctcctctaggtcacggaaacctcggtacacattatct-gtttggttctgtgggag 163 ||||||||||| || ||||||||||| ||||| ||||| || |||||||||||||| || Sbjct: 638 aatttctcctcaagttcacggaaaccacggtagacattctcccgtttggttctgtggaag 697 Query: 164 attcaatcgcctcacctctgtcatatacctgttcgccaaactaattattttatctcgaac 223 || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | Sbjct: 698 gtttaatcgcctcacctcagtcatgtacctgttcgccaaactaattattttatctcgagc 757 Query: 224 acccttctgcaaagaccctgtttgattcagcgagaatgttccatccaaaaagaatgaa 281 ||| | | | || ||||||||| |||| |||||||||||||| | |||||||||| Sbjct: 758 accttgattcgcagtccctgtttggttcaatgagaatgttccatcaagaaagaatgaa 815
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 466 gagcccttgcaacatcctcatcaccaa 492 |||| |||||||||||||||||||||| Sbjct: 81394 gagcacttgcaacatcctcatcaccaa 81420
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 466 gagcccttgcaacatcctcatcaccaa 492 |||| |||||||||||||||||||||| Sbjct: 19624203 gagcacttgcaacatcctcatcaccaa 19624229
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 466 gagcccttgcaacatcctcatcaccaa 492 |||| |||||||||||||||||||||| Sbjct: 19635479 gagcacttgcaacatcctcatcaccaa 19635505
>ref|XM_785080.1| PREDICTED: Strongylocentrotus purpuratus similar to IK cytokine, down-regulator of HLA II (LOC585247), mRNA Length = 321 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 515 tctatccagtgcagccttctca 536 |||||||||||||||||||||| Sbjct: 231 tctatccagtgcagccttctca 210
>ref|XM_785934.1| PREDICTED: Strongylocentrotus purpuratus similar to IK cytokine, down-regulator of HLA II (LOC586140), partial mRNA Length = 1766 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 515 tctatccagtgcagccttctca 536 |||||||||||||||||||||| Sbjct: 1707 tctatccagtgcagccttctca 1686
>emb|CR522968.1| Gallus gallus finished cDNA, clone ChEST745k20 Length = 819 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 484 catcaccaactaattcctgtcc 505 |||||||||||||||||||||| Sbjct: 460 catcaccaactaattcctgtcc 439
>gb|AC006917.6|AC006917 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence Length = 132699 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 acctctgtcatatacctgttcg 198 |||||||||||||||||||||| Sbjct: 84996 acctctgtcatatacctgttcg 85017
>emb|AL844583.6| Mouse DNA sequence from clone RP23-240F13 on chromosome X, complete sequence Length = 176870 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Minus Query: 648 gtttggtcaaggagtctggcccaaatttcc 677 ||||||||||||||||||| ||||||||| Sbjct: 96508 gtttggtcaaggagtctggaacaaatttcc 96479 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,379,087 Number of Sequences: 3902068 Number of extensions: 6379087 Number of successful extensions: 110138 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109931 Number of HSP's gapped (non-prelim): 199 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
