ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1l05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 874 bits (441), Expect = 0.0 Identities = 463/469 (98%), Gaps = 1/469 (0%) Strand = Plus / Plus Query: 12 aatttcgcctactagtatttataatacttcaggcagctaatgaaactattttggtaaaat 71 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 77016 aatttcgcctactagtatttataatacttcagg-agctaatgaaactattttggtaaaat 77074 Query: 72 tcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctt 131 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 77075 tcaatcctctcaattcctcggcaatcgcgccaaaaactcgagttccttttggattgcctt 77134 Query: 132 tttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatt 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77135 tttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatt 77194 Query: 192 tgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggca 251 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77195 tgaactctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggca 77254 Query: 252 tttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgct 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77255 tttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgct 77314 Query: 312 gattaccagcagctcctatgactcgaatacacatcaattttcgagctccactattgtctg 371 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 77315 gattaccagcagctcctatgactcgaatacacatcaattttcgagctccactattatcgg 77374 Query: 372 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77375 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 77434 Query: 432 tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaaccgggca 480 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77435 tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaaccgggca 77483 Score = 113 bits (57), Expect = 6e-22 Identities = 65/69 (94%) Strand = Plus / Plus Query: 489 cttccataccccttttagggttctatatntntaatcgaataaattgacttngnatgggca 548 |||||||||||||||||||||||||||| | ||||||||||||||||||| | ||||||| Sbjct: 77496 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatgggca 77555 Query: 549 ttttactgg 557 ||||||||| Sbjct: 77556 ttttactgg 77564
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 732 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 674 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 673 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 614 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 613 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 554 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 494 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 493 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 434 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 433 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 374 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 314 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 313 gatgaaagaaatattgtctttccagaaagaagaacc 278 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 194
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1474 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1416 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1415 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1356 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1355 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1296 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1295 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1236 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1235 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 1176 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 1175 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 1116 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 1056 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 1055 gatgaaagaaatattgtctttccagaaagaagaacc 1020 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 936
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1474 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1416 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1415 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1356 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1355 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1296 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1295 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1236 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1235 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 1176 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 1175 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 1116 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 1056 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 1055 gatgaaagaaatattgtctttccagaaagaagaacc 1020 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 936
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 77251 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 77309 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 77310 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 77369 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 77370 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 77429 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77430 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 77489 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77490 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 77549 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 77550 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 77609 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77610 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 77669 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 77670 gatgaaagaaatattgtctttccagaaagaagaacc 77705 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77788
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 77251 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 77309 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 77310 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 77369 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 77370 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 77429 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77430 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 77489 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77490 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 77549 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 77550 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 77609 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77610 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 77669 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 77670 gatgaaagaaatattgtctttccagaaagaagaacc 77705 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77788
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 77192 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 77250 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 77251 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 77310 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 77311 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 77370 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77371 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 77430 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77431 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 77490 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 77491 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 77550 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77551 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 77610 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 77611 gatgaaagaaatattgtctttccagaaagaagaacc 77646 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77732
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 53262 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 53320 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 53321 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 53380 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 53381 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 53440 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53441 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 53500 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 53501 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 53560 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 53561 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 53620 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53621 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 53680 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 53681 gatgaaagaaatattgtctttccagaaagaagaacc 53716 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 53754 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 53799
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 126090 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 126148 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 126149 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 126208 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 126209 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 126268 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126269 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 126328 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 126329 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 126388 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 126389 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 126448 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126449 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 126508 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 126509 gatgaaagaaatattgtctttccagaaagaagaacc 126544 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 126582 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 126627
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 77238 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 77296 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 77297 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 77356 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 77357 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 77416 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77417 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 77476 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77477 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 77536 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 77537 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 77596 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77597 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 77656 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 77657 gatgaaagaaatattgtctttccagaaagaagaacc 77692 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 77730 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77775
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 73542 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 73484 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 73483 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 73424 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 73423 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 73364 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73363 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 73304 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 73303 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 73244 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 73243 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 73184 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73183 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 73124 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 73123 gatgaaagaaatattgtctttccagaaagaagaacc 73088 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 73009 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 72964
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 75439 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 75497 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 75498 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 75557 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 75558 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 75617 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75618 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 75677 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 75678 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 75737 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 75738 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 75797 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75798 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 75857 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 75858 gatgaaagaaatattgtctttccagaaagaagaacc 75893 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 75932 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 75977
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 9503 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 9561 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 9562 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 9621 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 9622 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 9681 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9682 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 9741 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 9742 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 9801 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 9802 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 9861 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9862 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 9921 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 9922 gatgaaagaaatattgtctttccagaaagaagaacc 9957 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 9996 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 10041
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 9192469 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 9192411 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 9192410 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 9192351 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 9192350 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 9192291 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192290 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 9192231 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 9192230 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 9192171 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 9192170 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 9192111 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192110 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 9192051 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 9192050 gatgaaagaaatattgtctttccagaaagaagaacc 9192015 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 9115516 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 9115458 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 9115457 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 9115398 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 9115397 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 9115338 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115337 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 9115278 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 9115277 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 9115218 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 9115217 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 9115158 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115157 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 9115098 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 9115097 gatgaaagaaatattgtctttccagaaagaagaacc 9115062 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 207 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 257 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 17722552 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 17722502 Score = 77.8 bits (39), Expect = 3e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 198 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 253 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 2072703 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 2072762 Query: 254 tggggcaatgcgtctttgattaca 277 | ||||| ||| |||||| ||||| Sbjct: 2072763 ttgggcactgcttctttggttaca 2072786 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 9191936 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 9191891 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 9114983 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 9114938
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 10369047 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 10369105 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 10369106 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 10369165 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 10369166 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 10369225 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369226 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 10369285 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 10369286 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 10369345 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 10369346 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 10369405 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369406 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 10369465 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 10369466 gatgaaagaaatattgtctttccagaaagaagaacc 10369501 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 190 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 245 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14021582 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14021523 Query: 246 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 305 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14021522 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14021463 Query: 306 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 350 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14021462 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14021421 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 10369540 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 10369585
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 9259811 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 9259753 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 9259752 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 9259693 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 9259692 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 9259633 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259632 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 9259573 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 9259572 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 9259513 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 9259512 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 9259453 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259452 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 9259393 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 9259392 gatgaaagaaatattgtctttccagaaagaagaacc 9259357 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 130 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 189 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 10791213 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 10791154 Query: 190 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 249 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 10791153 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 10791094 Query: 250 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 299 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10791093 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 10791044 Score = 172 bits (87), Expect = 8e-40 Identities = 146/163 (89%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 17206218 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattcctcgg 17206276 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || ||||||||||| | |||||| ||||| || ||||||| |||||| |||||||||| Sbjct: 17206277 ccattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcag 17206335 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 || ||| |||||||| |||||||||||||||||||||||||| Sbjct: 17206336 cactgttgtcatagcgtattattataccgtcttcgcatttgaa 17206378 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 9259318 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 9259273
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 12755803 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 12755861 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 12755862 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 12755921 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 12755922 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 12755981 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12755982 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 12756041 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 12756042 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 12756101 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 12756102 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 12756161 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756162 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 12756221 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 12756222 gatgaaagaaatattgtctttccagaaagaagaacc 12756257 Score = 722 bits (364), Expect = 0.0 Identities = 434/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct: 19545778 ctactagtatttataatacttcagg-agctaatgaaactagtttagtaaaattcaattct 19545720 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||| | |||| ||||||||| |||||||||||||| || |||||||||||| Sbjct: 19545719 ctcaattcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatca 19545660 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 19545659 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 19545600 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 19545599 ttacatgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggc 19545540 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 19545539 actgcgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattacta 19545480 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 19545479 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 19545420 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545419 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 19545360 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 19545359 gatgaaagaaatattgtctttccagaaagaagaacc 19545324 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 145 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 204 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3036155 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 3036096 Query: 205 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3036095 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 3036036 Query: 265 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 324 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3036035 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 3035976 Query: 325 tcctatgactcgaatacacat 345 ||||||||||||||||||||| Sbjct: 3035975 tcctatgactcgaatacacat 3035955 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 50 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 109 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 3109053 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 3109111 Query: 110 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 169 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 3109112 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 3109170 Query: 170 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 229 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 3109171 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 3109229 Query: 230 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 289 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 3109230 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 3109289 Query: 290 tcaccaatacgagcatatcgctgattaccagcagctccta 329 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 3109290 tcatcaatatgagcatattgttgattactagcagcaccta 3109329 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 372 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 431 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3109364 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 3109423 Query: 432 tg 433 || Sbjct: 3109424 tg 3109425 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 19545285 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 19545240 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 12756295 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 12756340 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 tttcaatttgttatttcaatgcaaa 437 ||||||||||| ||||||||||||| Sbjct: 4108954 tttcaatttgtaatttcaatgcaaa 4108978
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 71024 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 70966 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 70965 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 70906 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 70905 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 70846 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70845 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 70786 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 70785 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 70726 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 70725 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 70666 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70665 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 70606 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 70605 gatgaaagaaatattgtctttccagaaagaagaacc 70570 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 70531 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 70486
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1482 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1424 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1423 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1364 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1363 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1304 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1303 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1244 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1243 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 1184 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 1183 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 1124 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 1064 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 1063 gatgaaagaaatattgtctttccagaaagaagaacc 1028 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 990 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 945
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1697 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1639 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1638 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1579 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1578 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1519 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1518 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1459 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1458 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 1399 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 1398 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 1339 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 1279 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 1278 gatgaaagaaatattgtctttccagaaagaagaacc 1243 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 1205 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 1160
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 769 bits (388), Expect = 0.0 Identities = 440/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 10375086 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 10375144 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 10375145 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 10375204 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 10375205 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 10375264 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375265 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 10375324 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 10375325 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 10375384 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 10375385 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 10375444 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375445 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 10375504 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 10375505 gatgaaagaaatattgtctttccagaaagaagaacc 10375540 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 190 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 245 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14029824 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14029765 Query: 246 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 305 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14029764 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14029705 Query: 306 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 350 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14029704 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14029663 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 10375579 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 10375624
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 761 bits (384), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| Sbjct: 5656701 ctactagtatttataatacttcagg-agctaatgaaactattgtagtaaaattcaattct 5656759 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 5656760 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 5656819 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 5656820 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 5656879 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656880 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 5656939 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5656940 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 5656999 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 5657000 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 5657059 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657060 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 5657119 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 5657120 gatgaaagaaatattgtctttccagaaagaagaacc 5657155 Score = 349 bits (176), Expect = 6e-93 Identities = 213/224 (95%), Gaps = 1/224 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 20514213 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 20514271 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 20514272 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 20514331 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 20514332 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 20514391 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttc 243 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20514392 ttacatgtacgtacaattacagctcgaattacttcggatctttc 20514435 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 57 ctattttggtaaaattcaattctctcaattc 87 ||||||| ||||||||||||||||||||||| Sbjct: 25823760 ctattttagtaaaattcaattctctcaattc 25823730 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 5657194 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 5657239
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 761 bits (384), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 33497017 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 33497075 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 33497076 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 33497135 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 33497136 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 33497195 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497196 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 33497255 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 33497256 actgcatctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 33497315 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 33497316 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 33497375 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497376 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 33497435 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 33497436 gatgaaagaaatattgtctttccagaaagaagaacc 33497471 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 119 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 178 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 30976459 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 30976400 Query: 179 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 238 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 30976399 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 30976340 Query: 239 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 298 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 30976339 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 30976280 Query: 299 cgagcatat 307 |||| |||| Sbjct: 30976279 cgagtatat 30976271 Score = 69.9 bits (35), Expect = 8e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 160 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 39109319 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 39109268 Query: 161 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 220 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 39109267 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 39109208 Query: 221 gctc 224 |||| Sbjct: 39109207 gctc 39109204 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgat 137 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39108053 ccaaaaactcgagttccttttggatttccttcttgat 39108017 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgat 137 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39103979 ccaaaaactcgagttccttttggatttccttcttgat 39103943 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 33497509 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 33497554
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 761 bits (384), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 42214 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 42272 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 42273 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 42332 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 42333 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 42392 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42393 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 42452 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 42453 actgcatctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 42512 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 42513 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 42572 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42573 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 42632 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 42633 gatgaaagaaatattgtctttccagaaagaagaacc 42668 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 42706 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 42751
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 761 bits (384), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 731 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 673 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 672 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 613 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 612 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 553 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 552 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggagc 493 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 492 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 433 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 432 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 373 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 313 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 312 gatgaaagaaatattgtctttccagaaagaagaacc 277 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 194
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 761 bits (384), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| Sbjct: 5656694 ctactagtatttataatacttcagg-agctaatgaaactattgtagtaaaattcaattct 5656752 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 5656753 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 5656812 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 5656813 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 5656872 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656873 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 5656932 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5656933 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 5656992 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 5656993 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 5657052 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657053 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 5657112 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 5657113 gatgaaagaaatattgtctttccagaaagaagaacc 5657148 Score = 349 bits (176), Expect = 6e-93 Identities = 213/224 (95%), Gaps = 1/224 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 20440427 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 20440485 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 20440486 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 20440545 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 20440546 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 20440605 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttc 243 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20440606 ttacatgtacgtacaattacagctcgaattacttcggatctttc 20440649 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 57 ctattttggtaaaattcaattctctcaattc 87 ||||||| ||||||||||||||||||||||| Sbjct: 25751936 ctattttagtaaaattcaattctctcaattc 25751906 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 5657187 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 5657232
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 761 bits (384), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| Sbjct: 11224 ctactagtatttataatacttcagg-agctaatgaaactattgtagtaaaattcaattct 11282 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 11283 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 11342 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 11343 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 11402 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11403 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 11462 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11463 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 11522 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 11523 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 11582 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11583 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 11642 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 11643 gatgaaagaaatattgtctttccagaaagaagaacc 11678 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 11717 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 11762
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 761 bits (384), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 77194 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 77252 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 77253 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 77312 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 77313 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 77372 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77373 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 77432 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77433 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 77492 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 77493 gcagctcctatgactcgaatacacatcaattttcgagctccgctgttatctgctacattt 77552 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77553 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 77612 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 77613 gatgaaagaaatattgtctttccagaaagaagaacc 77648 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Plus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77732
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1472 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1414 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1413 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1354 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1353 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1294 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1234 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1233 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 1174 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| Sbjct: 1173 gcagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattt 1114 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 1054 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||| |||||||||||||||| |||| Sbjct: 1053 gatgaaagaaatatcgtctttccagaaagaagaacc 1018
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1472 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1414 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1413 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1354 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1353 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1294 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1234 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1233 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 1174 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| Sbjct: 1173 gcagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattt 1114 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 1054 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||| |||||||||||||||| |||| Sbjct: 1053 gatgaaagaaatatcgtctttccagaaagaagaacc 1018
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 27922734 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 27922792 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 27922793 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 27922852 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 27922853 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 27922912 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27922913 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 27922972 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 27922973 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 27923032 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| Sbjct: 27923033 gcagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattt 27923092 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27923093 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 27923152 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||| |||||||||||||||| |||| Sbjct: 27923153 gatgaaagaaatatcgtctttccagaaagaagaacc 27923188 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 53 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 112 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 4509148 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 4509089 Query: 113 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 172 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 4509088 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 4509030 Query: 173 attataccgtcttcgcatttgaa 195 ||||||||||||||||||||||| Sbjct: 4509029 attataccgtcttcgcatttgaa 4509007
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 23181851 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 23181793 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||| ||||||||| ||||||||||||| || |||||||||||| Sbjct: 23181792 ctcaattcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatca 23181733 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 23181732 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 23181673 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181672 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 23181613 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 23181612 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 23181553 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 23181552 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 23181493 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181492 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 23181433 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 23181432 gatgaaagaaatattgtctttccagaaagaagaacc 23181397 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 23181359 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 23181314
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 86092 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 86150 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 86151 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 86210 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 86211 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 86270 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86271 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 86330 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 86331 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 86390 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| Sbjct: 86391 gcagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattt 86450 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86451 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 86510 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||| |||||||||||||||| |||| Sbjct: 86511 gatgaaagaaatatcgtctttccagaaagaagaacc 86546
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 12068 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 12126 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 12127 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 12186 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 12187 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 12246 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12247 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 12306 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 12307 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 12366 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| Sbjct: 12367 gcagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattt 12426 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12427 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 12486 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||| |||||||||||||||| |||| Sbjct: 12487 gatgaaagaaatatcgtctttccagaaagaagaacc 12522
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 132499 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 132441 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||| ||||||||| ||||||||||||| || |||||||||||| Sbjct: 132440 ctcaattcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatca 132381 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 132380 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 132321 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132320 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 132261 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 132260 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 132201 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 132200 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 132141 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132140 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 132081 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 132080 gatgaaagaaatattgtctttccagaaagaagaacc 132045 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 132007 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 131962
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 753 bits (380), Expect = 0.0 Identities = 438/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 16613 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 16555 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||| ||||||||| ||||||||||||| || |||||||||||| Sbjct: 16554 ctcaattcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatca 16495 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 16494 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 16435 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16434 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 16375 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 16374 actgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacta 16315 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 16314 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 16255 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16254 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 16195 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 16194 gatgaaagaaatattgtctttccagaaagaagaacc 16159 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 16121 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 16076
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 751 bits (379), Expect = 0.0 Identities = 498/539 (92%), Gaps = 2/539 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| Sbjct: 129 ctactagtatttataatacttcagg-agctaatgaaactattttagtataattcaattct 187 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 || ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 188 cttaattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatca 247 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct: 248 atgataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattct 307 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ttacgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 367 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 368 actgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattacca 427 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 428 gcggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 487 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 488 aaaagggtctgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaag 547 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaaccgggcannnnnnnncttccataccc 499 |||||||||||||||||||||||||||||||||||| || |||| |||| | Sbjct: 548 gatgaaagaaatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactc 607 Query: 500 ct-tttagggttctatatntntaatcgaataaattgacttngnatgggcattttactgg 557 || ||| ||||||||||| | |||||||| |||||||||| | |||||||||||||||| Sbjct: 608 ctttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 666
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 751 bits (379), Expect = 0.0 Identities = 498/539 (92%), Gaps = 2/539 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| Sbjct: 79686 ctactagtatttataatacttcagg-agctaatgaaactattttagtataattcaattct 79744 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 || ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 79745 cttaattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatca 79804 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct: 79805 atgataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattct 79864 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79865 ttacgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 79924 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 79925 actgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattacca 79984 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 79985 gcggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 80044 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 80045 aaaagggtctgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaag 80104 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaaccgggcannnnnnnncttccataccc 499 |||||||||||||||||||||||||||||||||||| || |||| |||| | Sbjct: 80105 gatgaaagaaatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactc 80164 Query: 500 ct-tttagggttctatatntntaatcgaataaattgacttngnatgggcattttactgg 557 || ||| ||||||||||| | |||||||| |||||||||| | |||||||||||||||| Sbjct: 80165 ctttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 80223
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 729 bits (368), Expect = 0.0 Identities = 435/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 732 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 674 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 673 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 614 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 613 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 554 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 494 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 493 actacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactacta 434 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct: 433 gcagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattt 374 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 373 aaaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaag 314 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 313 gatgaaagaaatattgtctttccagaaagaagaacc 278 Score = 42.1 bits (21), Expect = 1.9 Identities = 35/41 (85%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcatttt 552 ||||| | ||| |||| |||||||||| | ||||||||||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcatttt 199
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 729 bits (368), Expect = 0.0 Identities = 435/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1460 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1402 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1401 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1342 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1341 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1282 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1222 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 1221 actacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactacta 1162 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct: 1161 gcagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattt 1102 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1101 aaaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaag 1042 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 1041 gatgaaagaaatattgtctttccagaaagaagaacc 1006 Score = 42.1 bits (21), Expect = 1.9 Identities = 35/41 (85%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcatttt 552 ||||| | ||| |||| |||||||||| | ||||||||||| Sbjct: 967 tatatttctaaccgaagaaattgacttcgtatgggcatttt 927
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 729 bits (368), Expect = 0.0 Identities = 435/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1675 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1617 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1616 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 1557 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 1556 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 1497 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1496 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 1437 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 1436 actacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactacta 1377 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct: 1376 gcagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattt 1317 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1316 aaaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaag 1257 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 1256 gatgaaagaaatattgtctttccagaaagaagaacc 1221 Score = 42.1 bits (21), Expect = 1.9 Identities = 35/41 (85%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcatttt 552 ||||| | ||| |||| |||||||||| | ||||||||||| Sbjct: 1182 tatatttctaaccgaagaaattgacttcgtatgggcatttt 1142
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 729 bits (368), Expect = 0.0 Identities = 435/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 11896632 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 11896574 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 11896573 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 11896514 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 11896513 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 11896454 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11896453 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 11896394 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 11896393 actacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactacta 11896334 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct: 11896333 gcagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattt 11896274 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 11896273 aaaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaag 11896214 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 11896213 gatgaaagaaatattgtctttccagaaagaagaacc 11896178 Score = 172 bits (87), Expect = 8e-40 Identities = 146/163 (89%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| || Sbjct: 20862633 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattccttgg 20862691 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || ||||||||||| | |||||| ||||| || ||||||| |||||| |||||||||| Sbjct: 20862692 cgattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcag 20862750 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 |||||| |||||||| |||||||||||||||||||||||||| Sbjct: 20862751 cattgttgtcatagcgtattattataccgtcttcgcatttgaa 20862793 Score = 153 bits (77), Expect = 7e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 395 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14456068 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 14456009 Query: 455 gtctttccagaaagaaaaacc 475 |||||||||||||||| |||| Sbjct: 14456008 gtctttccagaaagaagaacc 14455988 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 14455950 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 14455905 Score = 42.1 bits (21), Expect = 1.9 Identities = 35/41 (85%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcatttt 552 ||||| | ||| |||| |||||||||| | ||||||||||| Sbjct: 11896139 tatatttctaaccgaagaaattgacttcgtatgggcatttt 11896099
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 729 bits (368), Expect = 0.0 Identities = 435/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 78122 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 78064 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 78063 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 78004 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 78003 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 77944 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77943 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 77884 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 77883 actacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactacta 77824 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct: 77823 gcagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattt 77764 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 77763 aaaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaag 77704 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 77703 gatgaaagaaatattgtctttccagaaagaagaacc 77668 Score = 42.1 bits (21), Expect = 1.9 Identities = 35/41 (85%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcatttt 552 ||||| | ||| |||| |||||||||| | ||||||||||| Sbjct: 77629 tatatttctaaccgaagaaattgacttcgtatgggcatttt 77589
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 729 bits (368), Expect = 0.0 Identities = 435/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1112 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 1054 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 1053 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 994 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 993 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 934 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 933 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 874 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 873 actacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactacta 814 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct: 813 gcagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattt 754 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 753 aaaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaag 694 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 693 gatgaaagaaatattgtctttccagaaagaagaacc 658 Score = 42.1 bits (21), Expect = 1.9 Identities = 35/41 (85%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcatttt 552 ||||| | ||| |||| |||||||||| | ||||||||||| Sbjct: 619 tatatttctaaccgaagaaattgacttcgtatgggcatttt 579
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 722 bits (364), Expect = 0.0 Identities = 434/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct: 146490 ctactagtatttataatacttcagg-agctaatgaaactagtttagtaaaattcaattct 146432 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||| | |||| ||||||||| |||||||||||||| || |||||||||||| Sbjct: 146431 ctcaattcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatca 146372 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 146371 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 146312 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 146311 ttacatgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggc 146252 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 146251 actgcgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattacta 146192 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 146191 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 146132 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146131 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 146072 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 146071 gatgaaagaaatattgtctttccagaaagaagaacc 146036 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 145997 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 145952
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 722 bits (364), Expect = 0.0 Identities = 434/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct: 5677 ctactagtatttataatacttcagg-agctaatgaaactagtttagtaaaattcaattct 5619 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||| | |||| ||||||||| |||||||||||||| || |||||||||||| Sbjct: 5618 ctcaattcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatca 5559 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 5558 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 5499 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 5498 ttacatgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggc 5439 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 5438 actgcgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattacta 5379 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 5378 gcagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 5319 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5318 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 5259 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 ||||||||||||||||||||||||||||||| |||| Sbjct: 5258 gatgaaagaaatattgtctttccagaaagaagaacc 5223 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 5184 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 5139
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 722 bits (364), Expect = 0.0 Identities = 434/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct: 79028 ctactagtatttataatacttcagg-agctaatgaaactattttagtcaaattcaattct 79086 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 || ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 79087 cttaattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatca 79146 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct: 79147 atgataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattct 79206 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79207 ttacgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 79266 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 79267 actgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattacca 79326 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 79327 gcggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 79386 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct: 79387 aaaagggtctgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaag 79446 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||||||||||||||||||||||||| Sbjct: 79447 gatgaaagaaatattgtctttccagaaagaaaaacc 79482 Score = 73.8 bits (37), Expect = 5e-10 Identities = 51/57 (89%) Strand = Plus / Plus Query: 501 ttttagggttctatatntntaatcgaataaattgacttngnatgggcattttactgg 557 |||| ||||||||||| | |||||||| |||||||||| | |||||||||||||||| Sbjct: 79509 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 79565
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 722 bits (364), Expect = 0.0 Identities = 434/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct: 641 ctactagtatttataatacttcagg-agctaatgaaactattttagtcaaattcaattct 583 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 || ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 582 cttaattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatca 523 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct: 522 atgataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattct 463 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 ttacgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 403 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 402 actgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattacca 343 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 342 gcggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 283 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct: 282 aaaagggtctgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaag 223 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||||||||||||||||||||||||| Sbjct: 222 gatgaaagaaatattgtctttccagaaagaaaaacc 187 Score = 73.8 bits (37), Expect = 5e-10 Identities = 51/57 (89%) Strand = Plus / Minus Query: 501 ttttagggttctatatntntaatcgaataaattgacttngnatgggcattttactgg 557 |||| ||||||||||| | |||||||| |||||||||| | |||||||||||||||| Sbjct: 160 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 104
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 722 bits (364), Expect = 0.0 Identities = 434/456 (95%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct: 79044 ctactagtatttataatacttcagg-agctaatgaaactattttagtcaaattcaattct 79102 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 || ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 79103 cttaattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatca 79162 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct: 79163 atgataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattct 79222 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79223 ttacgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 79282 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 79283 actgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattacca 79342 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 79343 gcggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattt 79402 Query: 380 aaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaag 439 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct: 79403 aaaagggtctgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaag 79462 Query: 440 gatgaaagaaatattgtctttccagaaagaaaaacc 475 |||||||||||||||||||||||||||||||||||| Sbjct: 79463 gatgaaagaaatattgtctttccagaaagaaaaacc 79498 Score = 73.8 bits (37), Expect = 5e-10 Identities = 51/57 (89%) Strand = Plus / Plus Query: 501 ttttagggttctatatntntaatcgaataaattgacttngnatgggcattttactgg 557 |||| ||||||||||| | |||||||| |||||||||| | |||||||||||||||| Sbjct: 79525 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 79581
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 605 bits (305), Expect = e-170 Identities = 357/373 (95%), Gaps = 1/373 (0%) Strand = Plus / Minus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 372 ttataatacttcagg-agctaatgaaactattttagtaaaattcaattctctcaattcct 314 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 |||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct: 313 cggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccg 254 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 253 ctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtac 194 Query: 210 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 269 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 193 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatctt 134 Query: 270 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 329 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 133 tgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctccta 74 Query: 330 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 389 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 73 tgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtct 14 Query: 390 gaggttgaatcat 402 ||||||||||||| Sbjct: 13 gaggttgaatcat 1
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 164 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 223 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14317 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 14376 Query: 224 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 283 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 14377 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 14436 Query: 284 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 343 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 14437 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 14496 Query: 344 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 403 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 14497 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 14556 Query: 404 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 463 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14557 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 14616 Query: 464 gaaa 467 |||| Sbjct: 14617 gaaa 14620 Score = 186 bits (94), Expect = 5e-44 Identities = 135/146 (92%), Gaps = 2/146 (1%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 13995 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 14053 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||| Sbjct: 14054 ctcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atca 14112 Query: 140 attataaccgcagcattgtcatcata 165 || |||||||| |||||||| ||||| Sbjct: 14113 atgataaccgctgcattgtcgtcata 14138
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 164 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 223 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24638131 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24638190 Query: 224 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 283 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24638191 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24638250 Query: 284 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 343 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24638251 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24638310 Query: 344 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 403 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24638311 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24638370 Query: 404 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 463 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24638371 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24638430 Query: 464 gaaa 467 |||| Sbjct: 24638431 gaaa 24638434 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 154 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 213 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32000439 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32000498 Query: 214 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 273 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32000499 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32000558 Query: 274 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 333 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32000559 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32000618 Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 393 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32000619 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32000678 Query: 394 ttgaatcatattattttgatttcaatttgttatttcaatgc 434 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32000679 ttgaatcatattattttgattttaatttgttatttcaatgc 32000719 Score = 186 bits (94), Expect = 5e-44 Identities = 135/146 (92%), Gaps = 2/146 (1%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 24637809 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 24637867 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||| Sbjct: 24637868 ctcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atca 24637926 Query: 140 attataaccgcagcattgtcatcata 165 || |||||||| |||||||| ||||| Sbjct: 24637927 atgataaccgctgcattgtcgtcata 24637952 Score = 149 bits (75), Expect = 1e-32 Identities = 143/163 (87%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| || Sbjct: 27557409 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattccttgg 27557467 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| || Sbjct: 27557468 cgattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtag 27557526 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 || |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27557527 cactgtcgtcatagcgtattattatactgtcttcgcatttgaa 27557569
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 164 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 223 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 70177 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 70236 Query: 224 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 283 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 70237 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 70296 Query: 284 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 343 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 70297 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 70356 Query: 344 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 403 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 70357 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 70416 Query: 404 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 463 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 70417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 70476 Query: 464 gaaa 467 |||| Sbjct: 70477 gaaa 70480 Score = 186 bits (94), Expect = 5e-44 Identities = 135/146 (92%), Gaps = 2/146 (1%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 69855 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 69913 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||| Sbjct: 69914 ctcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atca 69972 Query: 140 attataaccgcagcattgtcatcata 165 || |||||||| |||||||| ||||| Sbjct: 69973 atgataaccgctgcattgtcgtcata 69998
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 164 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 223 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24555600 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24555659 Query: 224 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 283 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24555660 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24555719 Query: 284 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 343 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24555720 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24555779 Query: 344 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 403 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24555780 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24555839 Query: 404 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 463 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24555840 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24555899 Query: 464 gaaa 467 |||| Sbjct: 24555900 gaaa 24555903 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 154 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 213 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32090951 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32091010 Query: 214 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 273 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32091011 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32091070 Query: 274 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 333 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32091071 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32091130 Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 393 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32091131 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32091190 Query: 394 ttgaatcatattattttgatttcaatttgttatttcaatgc 434 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32091191 ttgaatcatattattttgattttaatttgttatttcaatgc 32091231 Score = 186 bits (94), Expect = 5e-44 Identities = 135/146 (92%), Gaps = 2/146 (1%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 24555278 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 24555336 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||| Sbjct: 24555337 ctcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atca 24555395 Query: 140 attataaccgcagcattgtcatcata 165 || |||||||| |||||||| ||||| Sbjct: 24555396 atgataaccgctgcattgtcgtcata 24555421 Score = 149 bits (75), Expect = 1e-32 Identities = 143/163 (87%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| || Sbjct: 27648732 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattccttgg 27648790 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| || Sbjct: 27648791 cgattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtag 27648849 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 || |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27648850 cactgtcgtcatagcgtattattatactgtcttcgcatttgaa 27648892
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 154 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 213 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92391 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 92450 Query: 214 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 273 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 92451 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 92510 Query: 274 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 333 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 92511 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 92570 Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 393 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 92571 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 92630 Query: 394 ttgaatcatattattttgatttcaatttgttatttcaatgc 434 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 92631 ttgaatcatattattttgattttaatttgttatttcaatgc 92671
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 154 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 213 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 1623 Query: 214 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 273 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 1624 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 1683 Query: 274 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 333 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1684 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 1743 Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 393 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1744 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 1803 Query: 394 ttgaatcatattattttgatttcaatttgttatttcaatgc 434 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 1804 ttgaatcatattattttgattttaatttgttatttcaatgc 1844
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 389 bits (196), Expect = e-105 Identities = 325/366 (88%), Gaps = 4/366 (1%) Strand = Plus / Minus Query: 37 acttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaat 96 |||||||| |||||||||||||||||| ||||||||||| | |||||||||| || || Sbjct: 362 acttcagg-agctaatgaaactattttagtaaaattcaactgtctcaattcccgagcgat 304 Query: 97 cgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcatt 156 ||| ||||||||||||||||||||||| || |||| ||||||||| | ||| |||||||| Sbjct: 303 cgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgcagcatt 244 Query: 157 gtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaat 216 ||||||||| || ||||| ||||||| ||| | ||||| ||||||||||||||||||||| Sbjct: 243 gtcatcatatcgtattatgataccgttttcacgtttgagttctttacatgtacgtacaat 184 Query: 217 tacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattac 276 |||||||| ||||||||| ||||||||||||||||| | ||| | ||| ||||||||||| Sbjct: 183 tacagctctaattacttctgatctttctagaggcatattgggaactgcttctttgattac 124 Query: 277 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 336 |||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||| Sbjct: 123 agcaacaataacatcaccaatatgagcatatcggtgattac---cagctcctatgattcg 67 Query: 337 aatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttg 396 ||||||||| |||||||||||||| || || || |||||||| ||||||||||||||||| Sbjct: 66 aatacacattaattttcgagctccgctgttatccgctacattcaaaagggtctgaggttg 7 Query: 397 aatcat 402 |||||| Sbjct: 6 aatcat 1
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 379 bits (191), Expect = e-102 Identities = 316/357 (88%), Gaps = 3/357 (0%) Strand = Plus / Minus Query: 46 agctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaa 105 |||||||||||||||||| ||||||||||| | |||||||||| |||||||| ||||| Sbjct: 354 agctaatgaaactattttagtaaaattcaactgtctcaattcccgagcaatcgccccaaa 295 Query: 106 aactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcata 165 || |||||||||||||||||| |||| ||||||||| | |||||| |||||||||||||| Sbjct: 294 aattcgagttccttttgggtttccttcttgatcaatgacaaccgctgcattgtcatcata 235 Query: 166 gcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcg 225 || ||||| ||||||| || | ||||| ||||||||||||||||||||||||||||| Sbjct: 234 tcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattacagctct 175 Query: 226 aattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaat 285 ||||||||| ||||||||||||||||| | ||||| ||| |||||||||||||||||||| Sbjct: 174 aattacttctgatctttctagaggcatattgggcactgcttctttgattacagcaacaat 115 Query: 286 aacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacat 345 ||| ||||||||| |||||||||| ||||||| |||| ||||||| |||||||||||| Sbjct: 114 aacgtcaccaatatgagcatatcggtgattac---cagcccctatgattcgaatacacat 58 Query: 346 caattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 402 ||||| ||||||||| || || ||||||||||| |||||||| |||||||||||||| Sbjct: 57 caattctcgagctccgctgttatctgctacattcaaaagggtttgaggttgaatcat 1
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 145 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 204 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 23399 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 23340 Query: 205 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 23339 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 23280 Query: 265 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 324 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23279 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 23220 Query: 325 tcctatgactcgaatacacat 345 ||||||||||||||||||||| Sbjct: 23219 tcctatgactcgaatacacat 23199 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 50 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 109 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 96297 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 96355 Query: 110 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 169 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 96356 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 96414 Query: 170 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 229 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 96415 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 96473 Query: 230 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 289 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 96474 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 96533 Query: 290 tcaccaatacgagcatatcgctgattaccagcagctccta 329 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 96534 tcatcaatatgagcatattgttgattactagcagcaccta 96573 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 372 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 431 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 96608 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 96667 Query: 432 tg 433 || Sbjct: 96668 tg 96669
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 145 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 204 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 130171 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 130112 Query: 205 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130111 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 130052 Query: 265 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 324 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130051 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 129992 Query: 325 tcctatgactcgaatacacat 345 ||||||||||||||||||||| Sbjct: 129991 tcctatgactcgaatacacat 129971
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 349 bits (176), Expect = 6e-93 Identities = 213/224 (95%), Gaps = 1/224 (0%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 79020 ctactagtatttataatacttcagg-agctaatgaaactattttagtaaaattcaattct 78962 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 |||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct: 78961 ctcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatca 78902 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 78901 atgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactct 78842 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttc 243 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78841 ttacatgtacgtacaattacagctcgaattacttcggatctttc 78798
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 335 bits (169), Expect = 9e-89 Identities = 337/391 (86%), Gaps = 4/391 (1%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| || | | Sbjct: 81909 ctactagtatttataagacttcaggg-gctaatgagactattttagtgaaatttaacttt 81967 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 ||||||||| |||||||| ||||||||||||||||||||||| || |||| ||||||| Sbjct: 81968 ctcaattcccgagcaatcgctccaaaaactcgagttccttttggatttccttcttgatca 82027 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || | ||| || |||||||||||||| || ||||| ||||||| |||| ||||| |||| Sbjct: 82028 atgacaactgccgcattgtcatcatatcgtattatcataccgttgtcgcgtttgagttct 82087 Query: 200 ttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggc 259 ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | |||| Sbjct: 82088 ttacatgtacgtacaattacagctcgaataacttctgatctttcgagaggcatattgggc 82147 Query: 260 aatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattacca 319 | ||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct: 82148 actgcttctttgattacagcaacaataacgtcaccgatatgagcatatcggcgattac-- 82205 Query: 320 gcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattt 379 ||| ||||||| |||||| |||||||||| |||||| || || ||||| |||||||| Sbjct: 82206 -tagcccctatgattcgaatgcacatcaattctcgagccccgctgttgtccgctacattc 82264 Query: 380 aaaagggtctgaggttgaatcatattatttt 410 ||| ||||||||||||||||||||| ||||| Sbjct: 82265 aaatgggtctgaggttgaatcatatcatttt 82295
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 317 bits (160), Expect = 2e-83 Identities = 332/386 (86%), Gaps = 5/386 (1%) Strand = Plus / Plus Query: 47 gctaatgaaactattttggtaaaattcaattctctcaattcctcg-gcaatcgcgccaaa 105 ||||||||||| ||||| ||||||||||| | || |||||| ||| ||||| || ||||| Sbjct: 82598 gctaatgaaacgattttagtaaaattcaactgtcgcaattc-tcgagcaattgcaccaaa 82656 Query: 106 aactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcata 165 || ||||||||||||||| || |||| ||||||||| |||||||| |||||||||||||| Sbjct: 82657 aattcgagttccttttggatttccttcttgatcaatgataaccgctgcattgtcatcata 82716 Query: 166 gcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcg 225 || ||||| || |||| || | ||||| |||||||||||| |||||||| ||||||| Sbjct: 82717 tcgtattatcatgccgttgtcacgtttgagttctttacatgtgcgtacaatcacagctct 82776 Query: 226 aattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaat 285 ||||| ||| ||||||||||||||||| | ||||| ||| |||||||||||||||||||| Sbjct: 82777 aattatttctgatctttctagaggcatgttgggcactgcttctttgattacagcaacaat 82836 Query: 286 aacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacat 345 |||||| |||| | |||||||||| ||||||| ||| |||||||| |||||||||||| Sbjct: 82837 aacatcgccaagatgagcatatcggtgattac---cagttcctatgattcgaatacacat 82893 Query: 346 caattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcatatt 405 |||||| |||||||||| || || |||||||| ||||||||||||||||||||||||| Sbjct: 82894 taatttttgagctccactgttatccgctacattcaaaagggtctgaggttgaatcatatc 82953 Query: 406 attttgatttcaatttgttatttcaa 431 ||||| | || ||| | ||||||||| Sbjct: 82954 atttttaatttaatctcttatttcaa 82979
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 305 bits (154), Expect = 8e-80 Identities = 184/194 (94%) Strand = Plus / Minus Query: 282 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 341 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24916826 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 24916767 Query: 342 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 401 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 24916766 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 24916707 Query: 402 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 461 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 24916706 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 24916647 Query: 462 cagaaagaaaaacc 475 ||||||||| |||| Sbjct: 24916646 cagaaagaagaacc 24916633 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 85 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 144 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 20875041 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 20875100 Query: 145 aaccgcagcattgtcatc 162 ||||| ||||||||||| Sbjct: 20875101 aaccgttgcattgtcatc 20875118 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 66 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 108 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 32000475 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 32000433 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 24916596 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 24916551
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 305 bits (154), Expect = 8e-80 Identities = 184/194 (94%) Strand = Plus / Minus Query: 282 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 341 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 78109 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 78050 Query: 342 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 401 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 78049 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 77990 Query: 402 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 461 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 77989 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 77930 Query: 462 cagaaagaaaaacc 475 ||||||||| |||| Sbjct: 77929 cagaaagaagaacc 77916 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 77879 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77834
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 305 bits (154), Expect = 8e-80 Identities = 328/384 (85%), Gaps = 4/384 (1%) Strand = Plus / Plus Query: 27 tatttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaatt 86 |||||||||||| ||||| ||||| ||||||||||| || |||||||| | |||||||| Sbjct: 80435 tatttataatacctcagg-agctagggaaactattttagtgaaattcaaatgtctcaatt 80493 Query: 87 cctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataa 146 || || ||||| ||||||||||||||||||||||| || |||| ||||||||| | || Sbjct: 80494 cccgagcgatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaa 80553 Query: 147 ccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatg 206 | || |||||||||||||| || ||||| ||||||| || | ||||| ||||||||||| Sbjct: 80554 ctgctgcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatg 80613 Query: 207 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgt 266 |||||||||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| | Sbjct: 80614 tacgtacaattacagctctgaccacttctgatctttctagagacatattgggtactgctt 80673 Query: 267 ctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctc 326 |||||||||||||||||||||| ||||||||| |||||||||| |||||| |||| Sbjct: 80674 ctttgattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctc 80730 Query: 327 ctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaaggg 386 |||||| ||||||||||||||||| |||||| || || || || |||||||||||||||| Sbjct: 80731 ctatgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaaggg 80790 Query: 387 tctgaggttgaatcatattatttt 410 |||||||||||||||||| ||||| Sbjct: 80791 tctgaggttgaatcatatcatttt 80814
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 293 bits (148), Expect = 3e-76 Identities = 319/374 (85%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82356 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 82414 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 82415 cgggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaact 82474 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| |||||||| || |||| || | ||||| ||||||||| ||| Sbjct: 82475 gcagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggta 82534 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| ||| Sbjct: 82535 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttct 82594 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 82595 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 82651 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82652 atgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc 82711 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 82712 tgaggttgaatcat 82725
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 285 bits (144), Expect = 8e-74 Identities = 299/350 (85%), Gaps = 3/350 (0%) Strand = Plus / Minus Query: 53 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 112 ||||||||||| || |||||||| | |||||||||| || ||||| |||||||||||| Sbjct: 347 gaaactattttagtgaaattcaaatgtctcaattcccgagcgatcgcaccaaaaactcga 288 Query: 113 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 172 ||||||||||| || |||| ||||||||| | ||| || |||||||||||||| || ||| Sbjct: 287 gttccttttggattcccttcttgatcaatgacaactgctgcattgtcatcatatcgtatt 228 Query: 173 attataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattact 232 || ||||||| || | ||||| ||||||||||||||||||||||||||||| | ||| Sbjct: 227 atcataccgttgtcacgtttgagttctttacatgtacgtacaattacagctctgaccact 168 Query: 233 tcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatca 292 || ||||||||||||| ||| | ||| | ||| ||||||||||||||||||||||| ||| Sbjct: 167 tctgatctttctagagacatattgggtactgcttctttgattacagcaacaataacgtca 108 Query: 293 ccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacatcaatttt 352 |||||| |||||||||| |||||| |||||||||| ||||||||||||||||| | Sbjct: 107 ccaatatgagcatatcggcgattac---tggctcctatgattcgaatacacatcaattct 51 Query: 353 cgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 402 ||||| || || || || |||||||||||||||||||||||||||||||| Sbjct: 50 cgagccccgctgttatccgctacatttaaaagggtctgaggttgaatcat 1
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 285 bits (144), Expect = 8e-74 Identities = 324/382 (84%), Gaps = 4/382 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| || | ||||||||| Sbjct: 80082 tttataatacctcggg-agctaatgaaactattttagtaaaattgaactgtctcaattct 80140 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||||||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| Sbjct: 80141 cgggcaatcgcaccaaaaacgcgagttccttttggatttccttcttgatcaatcacaact 80200 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||| Sbjct: 80201 gcagcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagta 80260 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | ||||| ||||||||||||||||| | || | ||||||| Sbjct: 80261 cggacaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtct 80320 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 80321 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 80377 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || || || ||||||||||| ||| ||||| Sbjct: 80378 atgattcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtc 80437 Query: 389 tgaggttgaatcatattatttt 410 |||||||||||||||| ||||| Sbjct: 80438 tgaggttgaatcatatcatttt 80459
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 285 bits (144), Expect = 8e-74 Identities = 318/374 (85%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82305 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 82363 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| Sbjct: 82364 cgggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaact 82423 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| |||||||| || |||| || | ||||| ||||||||| ||| Sbjct: 82424 gcagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggta 82483 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| ||| Sbjct: 82484 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttct 82543 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 82544 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 82600 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82601 atgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc 82660 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 82661 tgaggttgaatcat 82674
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 285 bits (144), Expect = 8e-74 Identities = 318/374 (85%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82317 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 82375 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| Sbjct: 82376 cgggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaact 82435 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| |||||||| || |||| || | ||||| ||||||||| ||| Sbjct: 82436 gcagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggta 82495 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| ||| Sbjct: 82496 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttct 82555 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 82556 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 82612 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82613 atgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc 82672 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 82673 tgaggttgaatcat 82686
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 278 bits (140), Expect = 2e-71 Identities = 314/370 (84%), Gaps = 4/370 (1%) Strand = Plus / Minus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 ||||||||| || ||||||||| ||||| || || ||||| || | ||||||||| | Sbjct: 366 taatacttcggg-agctaatgagactatcttagtgaaatttaactgtctcaattcacgag 308 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 |||||| |||||||||||||| |||||||| || |||| ||||||||| | ||| || | Sbjct: 307 caatcgaaccaaaaactcgagtgccttttggatttccttcttgatcaatgacaactgctg 248 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgta 212 ||||||||||||| || ||||| ||||||| |||| ||||| ||||||||||||||||| Sbjct: 247 cattgtcatcataccgtattatcataccgttgtcgcgtttgagttctttacatgtacgta 188 Query: 213 caattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttga 272 |||||||||||| |||||||| |||||||| || ||||| | |||| ||| ||||||| Sbjct: 187 caattacagctctgattacttctgatctttccaggggcatatttggcactgcttctttga 128 Query: 273 ttacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatga 332 |||||||||||||||| ||||| ||| |||||||||| | ||||| ||||||||||| Sbjct: 127 ttacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcctatga 71 Query: 333 ctcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgag 392 |||||||||||||| |||||||||||| || ||||| |||||||| ||| ||||||||| Sbjct: 70 ttcgaatacacatcagttttcgagctccgctgttgtccgctacattcaaatgggtctgag 11 Query: 393 gttgaatcat 402 |||||||||| Sbjct: 10 gttgaatcat 1
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 278 bits (140), Expect = 2e-71 Identities = 323/382 (84%), Gaps = 4/382 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| || | |||||||||| Sbjct: 82667 tttataatacctccgg-agctaatgaaactattttagtaaaatttaactgtctcaattcc 82725 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 |||||| || |||||||| |||||||| |||||||| |||| |||||| || | |||| Sbjct: 82726 cgggcaattgcaccaaaaacccgagttccctttgggtttccttcttgatcgatgacaacc 82785 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| ||| Sbjct: 82786 gcagcattgtcatcatatcgtattatcataccgttatcacgtttgagttctttacaagta 82845 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 |||||||||||||||| | ||||| |||||| |||| ||||| | |||| ||| ||| Sbjct: 82846 cgtacaattacagctctgaccacttctgatcttgctaggggcatgtttggcactgcttct 82905 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||| ||| |||||||||| |||| | ||||||| Sbjct: 82906 ttgatcacagcaacaataacgtcaccgatatgagcatatcgacgattgc---tagctcct 82962 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || || || || |||||||| ||||||||| Sbjct: 82963 atgattcgaatacacatcaattctcgagccccgctgttatccgctacattcaaaagggtc 83022 Query: 389 tgaggttgaatcatattatttt 410 |||||||||||||||| ||||| Sbjct: 83023 tgaggttgaatcatatcatttt 83044
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 278 bits (140), Expect = 2e-71 Identities = 317/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82452 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 82510 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 82511 cgggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaact 82570 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 |||||||||||||| || || ||||| || |||| || | ||||| ||||||||| ||| Sbjct: 82571 gcagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggta 82630 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| ||| Sbjct: 82631 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttct 82690 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 82691 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 82747 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82748 atgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc 82807 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 82808 tgaggttgaatcat 82821
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 278 bits (140), Expect = 2e-71 Identities = 317/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82449 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 82507 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 82508 cgggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaact 82567 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 |||||||||||||| || || ||||| || |||| || | ||||| ||||||||| ||| Sbjct: 82568 gcagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggta 82627 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| ||| Sbjct: 82628 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttct 82687 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 82688 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 82744 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82745 atgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc 82804 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 82805 tgaggttgaatcat 82818
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 276 bits (139), Expect = 7e-71 Identities = 322/381 (84%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| ||||| ||||||||||| |||||||| || | |||||||||| Sbjct: 85542 ttataatacctcaggg-gctaaggaaactattttagtaaaatttaactgtctcaattccc 85600 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 | | ||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||| | Sbjct: 85601 ggacgatcgcaccaaaaattcgagttccttttgggtttccttcttgatcaataataactg 85660 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 |||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| |||| Sbjct: 85661 cagcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacaggtac 85720 Query: 210 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 269 ||||||||||||||| |||||||| ||||||||||||||||| | || | | | |||| Sbjct: 85721 gtacaattacagctctgattacttctgatctttctagaggcatatttggtactacttctt 85780 Query: 270 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 329 |||| |||||||||||||| ||||||||| |||| ||||| |||||| || ||||| Sbjct: 85781 tgatcacagcaacaataacgtcaccaatatgagcgtatcggcgattac---tagttccta 85837 Query: 330 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 389 ||| ||||||||||||||||| ||| || || || ||||| |||||||| ||| |||||| Sbjct: 85838 tgattcgaatacacatcaattctcgggccccgctgttgtccgctacattcaaatgggtct 85897 Query: 390 gaggttgaatcatattatttt 410 | ||||||||||||| ||||| Sbjct: 85898 ggggttgaatcatatcatttt 85918
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 274 bits (138), Expect = 3e-70 Identities = 308/364 (84%), Gaps = 3/364 (0%) Strand = Plus / Plus Query: 47 gctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaa 106 ||||||||||||||||| |||||||| || | ||||||||| ||||||||| |||||| Sbjct: 80653 gctaatgaaactattttagtaaaattgaactgtctcaattctcgggcaatcgcaccaaaa 80712 Query: 107 actcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatag 166 ||||| ||||||||||| || |||| ||||||||| | ||| || |||||||||||||| Sbjct: 80713 actcgcgttccttttggatttccttcttgatcaatcacaactgcggcattgtcatcatat 80772 Query: 167 cggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcga 226 || ||||| ||||||| || | ||| | ||||||||| ||||| ||||||||||||| Sbjct: 80773 cgtattatcataccgttgtcacgtttaagttctttacaagtacggacaattacagctctg 80832 Query: 227 attacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaata 286 | ||||| ||||||||||||||||| | || | |||||||||||| |||||||||||| Sbjct: 80833 accacttctgatctttctagaggcatgtttggaactgcgtctttgatcacagcaacaata 80892 Query: 287 acatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacatc 346 || ||||||||| |||||||||| |||| | ||||||||||| ||||||||||||| Sbjct: 80893 acgtcaccaatatgagcatatcggcgattgc---tagctcctatgattcgaatacacatc 80949 Query: 347 aattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcatatta 406 |||| |||||| || || || ||||||||||| ||| ||||||||||||||||||||| | Sbjct: 80950 aattctcgagccccgctgttatctgctacattcaaatgggtctgaggttgaatcatatca 81009 Query: 407 tttt 410 |||| Sbjct: 81010 tttt 81013
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 274 bits (138), Expect = 3e-70 Identities = 318/376 (84%), Gaps = 4/376 (1%) Strand = Plus / Plus Query: 27 tatttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaatt 86 ||||||||||||||| || ||||||||| ||||| || || ||||| || | |||||||| Sbjct: 86608 tatttataatacttcggg-agctaatgagactatcttagtgaaatttaactgtctcaatt 86666 Query: 87 cctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataa 146 | ||||||| ||||||||||| || |||||||| || |||| ||||||||| | || Sbjct: 86667 cacgagcaatcgaaccaaaaactcgggtgccttttggatttccttcttgatcaatgacaa 86726 Query: 147 ccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatg 206 | || |||||||||||||| |||||||| ||||||| |||| |||| ||||||||||| Sbjct: 86727 ctgctgcattgtcatcataccggattatcataccgttgtcgcgcttgagttctttacatg 86786 Query: 207 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgt 266 |||||||||||||||||| |||||||| |||||||| || ||||| | |||| ||| | Sbjct: 86787 tacgtacaattacagctctgattacttctgatctttccaggggcatatttggcactgctt 86846 Query: 267 ctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctc 326 |||||||||||||||||||||| ||||| ||| |||||||||| | ||||| ||||| Sbjct: 86847 ctttgattacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctc 86903 Query: 327 ctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaaggg 386 |||||| |||||||||||| | |||||| ||||| || ||||| |||||||| ||||||| Sbjct: 86904 ctatgattcgaatacacataagttttcgggctccgctgttgtccgctacattcaaaaggg 86963 Query: 387 tctgaggttgaatcat 402 |||||||||||||||| Sbjct: 86964 tctgaggttgaatcat 86979
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 274 bits (138), Expect = 3e-70 Identities = 308/364 (84%), Gaps = 3/364 (0%) Strand = Plus / Plus Query: 47 gctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaa 106 ||||||||||||||||| |||||||| || | ||||||||| ||||||||| |||||| Sbjct: 80651 gctaatgaaactattttagtaaaattgaactgtctcaattctcgggcaatcgcaccaaaa 80710 Query: 107 actcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatag 166 ||||| ||||||||||| || |||| ||||||||| | ||| || |||||||||||||| Sbjct: 80711 actcgcgttccttttggatttccttcttgatcaatcacaactgcggcattgtcatcatat 80770 Query: 167 cggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcga 226 || ||||| ||||||| || | ||| | ||||||||| ||||| ||||||||||||| Sbjct: 80771 cgtattatcataccgttgtcacgtttaagttctttacaagtacggacaattacagctctg 80830 Query: 227 attacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaata 286 | ||||| ||||||||||||||||| | || | |||||||||||| |||||||||||| Sbjct: 80831 accacttctgatctttctagaggcatgtttggaactgcgtctttgatcacagcaacaata 80890 Query: 287 acatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacatc 346 || ||||||||| |||||||||| |||| | ||||||||||| ||||||||||||| Sbjct: 80891 acgtcaccaatatgagcatatcggcgattgc---tagctcctatgattcgaatacacatc 80947 Query: 347 aattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcatatta 406 |||| |||||| || || || ||||||||||| ||| ||||||||||||||||||||| | Sbjct: 80948 aattctcgagccccgctgttatctgctacattcaaatgggtctgaggttgaatcatatca 81007 Query: 407 tttt 410 |||| Sbjct: 81008 tttt 81011
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 272 bits (137), Expect = 1e-69 Identities = 323/383 (84%), Gaps = 4/383 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 82960 tttataatacttcaggt-gctaatgaaattatttttgtgaaatttaactgtctcaattct 83018 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | |||| Sbjct: 83019 cgggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaacc 83078 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| ||| Sbjct: 83079 gcagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagta 83138 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 |||||||||||||||| || ||||| |||||||||| ||| | | || | || | Sbjct: 83139 cgtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttc 83198 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 |||||||||||||||||||| ||||||||| |||||||||| |||||| ||| ||| Sbjct: 83199 ttgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagcccct 83255 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| Sbjct: 83256 atgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggtt 83315 Query: 389 tgaggttgaatcatattattttg 411 ||||||||||||||||||||||| Sbjct: 83316 tgaggttgaatcatattattttg 83338
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 272 bits (137), Expect = 1e-69 Identities = 323/383 (84%), Gaps = 4/383 (1%) Strand = Plus / Minus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 436 tttataatacttcaggt-gctaatgaaattatttttgtgaaatttaactgtctcaattct 378 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | |||| Sbjct: 377 cgggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaacc 318 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| ||| Sbjct: 317 gcagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagta 258 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 |||||||||||||||| || ||||| |||||||||| ||| | | || | || | Sbjct: 257 cgtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttc 198 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 |||||||||||||||||||| ||||||||| |||||||||| |||||| ||| ||| Sbjct: 197 ttgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagcccct 141 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| Sbjct: 140 atgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggtt 81 Query: 389 tgaggttgaatcatattattttg 411 ||||||||||||||||||||||| Sbjct: 80 tgaggttgaatcatattattttg 58
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 272 bits (137), Expect = 1e-69 Identities = 323/383 (84%), Gaps = 4/383 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 83188 tttataatacttcaggt-gctaatgaaattatttttgtgaaatttaactgtctcaattct 83246 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | |||| Sbjct: 83247 cgggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaacc 83306 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| ||| Sbjct: 83307 gcagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagta 83366 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 |||||||||||||||| || ||||| |||||||||| ||| | | || | || | Sbjct: 83367 cgtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttc 83426 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 |||||||||||||||||||| ||||||||| |||||||||| |||||| ||| ||| Sbjct: 83427 ttgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagcccct 83483 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| Sbjct: 83484 atgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggtt 83543 Query: 389 tgaggttgaatcatattattttg 411 ||||||||||||||||||||||| Sbjct: 83544 tgaggttgaatcatattattttg 83566
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 270 bits (136), Expect = 5e-69 Identities = 316/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82940 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 82998 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 82999 cgggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaact 83058 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || |||||||| |||| || | ||||| ||||||||| || Sbjct: 83059 gcagcattgtcatcatatcgtattattatcccgttgtcacgtttgagttctttacaggtc 83118 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | || ||| Sbjct: 83119 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtatggcttct 83178 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 83179 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 83235 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || || || || |||||||||||| ||||| Sbjct: 83236 atgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtc 83295 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 83296 tgaggttgaatcat 83309
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 262 bits (132), Expect = 1e-66 Identities = 315/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83177 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 83235 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 83236 cgggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaact 83295 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || Sbjct: 83296 gcagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtc 83355 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | || ||| Sbjct: 83356 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttct 83415 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 83416 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 83472 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || || || || |||||||||||| ||||| Sbjct: 83473 atgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtc 83532 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 83533 tgaggttgaatcat 83546
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 262 bits (132), Expect = 1e-66 Identities = 317/376 (84%), Gaps = 7/376 (1%) Strand = Plus / Plus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| |||||||||||||||||| | ||| || || || ||||||| Sbjct: 79239 ttataatacctcagg-agctaatgaaactattttcgcaaattt---ttgtcgcaattccc 79294 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| | Sbjct: 79295 gggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataactg 79354 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 |||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| |||| Sbjct: 79355 cagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagtac 79414 Query: 210 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 269 |||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| |||| Sbjct: 79415 gtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttctt 79474 Query: 270 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 329 |||| |||||||||||||| |||||||||||||||||||| | || | |||||||| Sbjct: 79475 tgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctccta 79531 Query: 330 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 389 ||| ||||||||||||||||| |||||| || || |||||||||||||| ||| |||||| Sbjct: 79532 tgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggtct 79591 Query: 390 gaggttgaatcatatt 405 |||||||||||||||| Sbjct: 79592 gaggttgaatcatatt 79607
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 262 bits (132), Expect = 1e-66 Identities = 315/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83420 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 83478 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 83479 cgggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaact 83538 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| || |||| || | ||||| ||||||||| ||| Sbjct: 83539 gcagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggta 83598 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | || ||| ||||||||||| ||||| | || | ||| ||| Sbjct: 83599 cgcacaattacagctctgactatttctgatctttctaggggcatatttggtactgcttct 83658 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 83659 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 83715 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| |||||||||||| |||| |||||| || || || || |||||||||||| ||||| Sbjct: 83716 atgattcgaatacacattaattctcgagccccgctgttatccgctacatttaaatgggtc 83775 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 83776 tgaggttgaatcat 83789
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 262 bits (132), Expect = 1e-66 Identities = 315/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||| || || |||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83175 tttataatacctcggg-agctaatgaaactattttagtaaaatttaattctctcaattcc 83233 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 83234 cgggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaact 83293 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 ||||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || Sbjct: 83294 gcagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtc 83353 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 || ||||||||||||| | |||||| ||||||||||| ||||| | || | || ||| Sbjct: 83354 cgcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttct 83413 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 ||||| |||||||||||||| ||||||||| |||||||||| |||| | ||||||| Sbjct: 83414 ttgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctcct 83470 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| ||||||||||||||||| |||||| || || || || |||||||||||| ||||| Sbjct: 83471 atgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtc 83530 Query: 389 tgaggttgaatcat 402 |||||||||||||| Sbjct: 83531 tgaggttgaatcat 83544
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 260 bits (131), Expect = 4e-66 Identities = 301/357 (84%), Gaps = 3/357 (0%) Strand = Plus / Plus Query: 46 agctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaa 105 |||||||||||||||||| || ||||| || | |||||||||| ||| ||||| ||||| Sbjct: 85102 agctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgatcgcaccaaa 85161 Query: 106 aactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcata 165 || ||||||||||||||| || |||| ||||||||| | ||| ||||||||||||||||| Sbjct: 85162 aattcgagttccttttggatttccttcttgatcaatgacaacggcagcattgtcatcata 85221 Query: 166 gcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcg 225 || ||||| || |||| |||| ||||| |||||||| ||||||||||||||||||| Sbjct: 85222 tcgtattatcatcccgttgtcgcgtttgagttctttacgagtacgtacaattacagctct 85281 Query: 226 aattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaat 285 || ||||| |||||||||||||| | | || | ||| || ||||| ||||||||||| Sbjct: 85282 gatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaat 85341 Query: 286 aacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacat 345 ||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||| Sbjct: 85342 aacgtcaccaatatgagcatatcggcgattac---tagctcctatgactcgaatacacat 85398 Query: 346 caattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 402 ||||| ||| || || || || ||||||||||| ||| ||||||||||||||||||| Sbjct: 85399 caattctcgggccccgctgttatctgctacattcaaatgggtctgaggttgaatcat 85455
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 130 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 189 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 4998 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 4939 Query: 190 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 249 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 4938 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 4879 Query: 250 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 299 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4878 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 4829
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 130 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 189 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 88345 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 88286 Query: 190 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 249 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 88285 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 88226 Query: 250 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 299 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88225 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 88176
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 240 bits (121), Expect = 4e-60 Identities = 317/379 (83%), Gaps = 10/379 (2%) Strand = Plus / Minus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| |||||||||||||||||| | ||| || || || ||||||| Sbjct: 3697 ttataatacctcagg-agctaatgaaactattttcgcaaattt---ttgtcgcaattccc 3642 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc- 148 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| Sbjct: 3641 gggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataacaa 3582 Query: 149 --gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatg 206 ||||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| | Sbjct: 3581 ctgcagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaag 3522 Query: 207 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgt 266 ||||||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| | Sbjct: 3521 tacgtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgctt 3462 Query: 267 ctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctc 326 ||||||| |||||||||||||| |||||||||||||||||||| | || | ||||| Sbjct: 3461 ctttgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctc 3405 Query: 327 ctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaaggg 386 |||||| ||||||||||||||||| |||||| || || |||||||||||||| ||| ||| Sbjct: 3404 ctatgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatggg 3345 Query: 387 tctgaggttgaatcatatt 405 ||||||||||||||||||| Sbjct: 3344 tctgaggttgaatcatatt 3326
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 236 bits (119), Expect = 6e-59 Identities = 317/381 (83%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| |||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 80696 ttataatacctcagg-agctaatgaaactattttagtaaagtttaattgtctcaattccc 80754 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 | ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 80755 gtgggatcgccccaaaaactcgagttccttttggatttccttcttgatcaatgacaactg 80814 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 | |||||||||||||| || ||||| | || | | | ||||| ||||||||| |||| Sbjct: 80815 cggcattgtcatcatatcgtattatcgtcccattgttacgtttgagttctttacaagtac 80874 Query: 210 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 269 ||||||||||||||| ||| ||||| |||||||||||||| | | || | ||| |||| Sbjct: 80875 gtacaattacagctctaatcacttctgatctttctagaggagtatttggtattgcttctt 80934 Query: 270 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 329 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| ||||| Sbjct: 80935 tgattacagcaacaataacgtcaccaatatgagcatatcggcgattactagc---tccta 80991 Query: 330 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 389 | | ||||||||||||||||| || ||| || || |||||||||||||| ||| ||| | Sbjct: 80992 ttattcgaatacacatcaattctctagccccgctgttgtctgctacattcaaataggttt 81051 Query: 390 gaggttgaatcatattatttt 410 | ||||||||||||| ||||| Sbjct: 81052 gtggttgaatcatatcatttt 81072
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 228 bits (115), Expect = 2e-56 Identities = 297/357 (83%), Gaps = 3/357 (0%) Strand = Plus / Plus Query: 46 agctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaa 105 ||||||||| ||||| || || |||||||| | |||||||||| | || |||| ||||| Sbjct: 87333 agctaatgatactatcttagtgaaattcaaatgtctcaattccccagcgatcgaaccaaa 87392 Query: 106 aactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcata 165 ||||||||||||||||| || || | | ||||||| | ||| || |||||||||||||| Sbjct: 87393 gactcgagttccttttggatttccctctggatcaataacaactgctgcattgtcatcata 87452 Query: 166 gcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcg 225 || ||||||||||||| || | ||||| ||||||||||||||||||||||||||||| Sbjct: 87453 tcgtattattataccgttgtcacgtttgagttctttacatgtacgtacaattacagctct 87512 Query: 226 aattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaat 285 || ||||| |||||||| || ||||| | ||| | ||| |||||||||||||||||||| Sbjct: 87513 gatcacttctgatctttccaggggcatattgggtactgcttctttgattacagcaacaat 87572 Query: 286 aacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacat 345 ||| ||||||||| |||||||||| | |||| |||||||| || |||||||||||| Sbjct: 87573 aacgtcaccaatatgagcatatcgggggttac---tagctcctacgattcgaatacacat 87629 Query: 346 caattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 402 ||||| |||||| || || ||||| |||||||| ||| ||| |||| ||||||||| Sbjct: 87630 caattctcgagccccgctgttgtccgctacattcaaataggtttgagcttgaatcat 87686
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 224 bits (113), Expect = 2e-55 Identities = 310/371 (83%), Gaps = 6/371 (1%) Strand = Plus / Minus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcg- 91 |||||||||||| ||||||||||||||||| ||||||||||| | |||||| || ||| Sbjct: 366 taatacttcaggg-gctaatgaaactattttagtaaaattcaactgtctcaactc-tcga 309 Query: 92 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 151 || || || ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 308 gcgattgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgct 249 Query: 152 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 211 |||||||||||||| | ||||| ||||| | || | ||||| ||||||||| || ||| Sbjct: 248 gcattgtcatcatattgtattatcataccattgtcacgtttgagttctttacacgtgcgt 189 Query: 212 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 271 ||||||||||||| || ||||| ||||||| ||||||||| | ||| | ||| |||||| Sbjct: 188 acaattacagctctgatcacttctgatctttgtagaggcatattgggaactgcttctttg 129 Query: 272 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 331 ||||| ||||||||||| || |||||| ||||||| || |||||| |||||||||| Sbjct: 128 attaccgcaacaataacgtcgccaatatgagcataacgtcgattac---tagctcctatg 72 Query: 332 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 391 | || ||||||||| ||||||| ||| || || ||||| |||||||||||| ||||||| Sbjct: 71 attctaatacacattaattttctagccccgctgttgtccgctacatttaaataggtctga 12 Query: 392 ggttgaatcat 402 ||||||||||| Sbjct: 11 ggttgaatcat 1
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 220 bits (111), Expect = 4e-54 Identities = 315/381 (82%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 85802 ttataatacctcaggt-gctaatgaaactattttagtgaaacttaactctctcaattcgt 85860 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 ||||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| | Sbjct: 85861 gggcaatcgcaccaaaaactcgggttccttttggatttccttcttgatcaatgacaacag 85920 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 |||||||||||||||| || ||||| |||||||| || ||||| | ||||||||| |||| Sbjct: 85921 cagcattgtcatcatatcgtattatgataccgtcgtcacatttaagttctttacaagtac 85980 Query: 210 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 269 ||||||||||||||| | ||||| ||||||||||| | | || ||||| || | Sbjct: 85981 gtacaattacagctctgaccacttctgatctttctagggaggtgcttggtaatgcttcct 86040 Query: 270 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 329 |||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||| | Sbjct: 86041 tgatcacagcaacaataatgtcaccgatatgagcatatcgacgattac---tagctccga 86097 Query: 330 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 389 ||| |||||||||||| |||| |||||| ||||| || || || ||||| ||| |||| | Sbjct: 86098 tgattcgaatacacattaattctcgagccccactgttatccgcgacattcaaacgggttt 86157 Query: 390 gaggttgaatcatattatttt 410 ||||||||||||||| ||||| Sbjct: 86158 gaggttgaatcatatcatttt 86178
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 206 bits (104), Expect = 6e-50 Identities = 314/382 (82%), Gaps = 4/382 (1%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 ||||||||| |||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 78574 tttataatatctcaggc-gctaatgaaactattttagtgaaattgaactgtctcaattcc 78632 Query: 89 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 148 ||| || |||| ||||| ||||||||||||||| || |||| ||||||||| | ||| Sbjct: 78633 cgggcgattgcgcaaaaaattcgagttccttttggatttccttcttgatcaatgacaact 78692 Query: 149 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 208 |||||||| |||||||| | ||||||||||| | | ||||| ||||||||| ||| Sbjct: 78693 gcagcattatcatcatactgtattattataccattgctacgtttgagttctttacaagta 78752 Query: 209 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 268 |||||||||||||||| || ||||| |||||||||| || | | || | ||| ||| Sbjct: 78753 cgtacaattacagctctgatcacttctgatctttctaagggtgtattcggtactgcttct 78812 Query: 269 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 328 |||||||||||||||| || ||||||||| ||| ||||| |||||| ||| |||| Sbjct: 78813 ttgattacagcaacaacaatgtcaccaatataagcgtatcgtcgattactagc---tcct 78869 Query: 329 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 388 |||| |||||||||||||||||| || ||||| ||||| || |||||||||||| |||| Sbjct: 78870 atgattcgaatacacatcaatttgcgggctccgctattatcggctacatttaaatgggtt 78929 Query: 389 tgaggttgaatcatattatttt 410 |||||||||||||||| ||||| Sbjct: 78930 tgaggttgaatcatatcatttt 78951
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 204 bits (103), Expect = 2e-49 Identities = 313/381 (82%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 85487 ttataatacctcaggt-gctaatgaaactattttagtgaaatttaactgtctcaattctc 85545 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 ||||||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 85546 gggcaatcgcaccaaaaactcgagttccttttggatttccttcttgatcaatcacaactg 85605 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 ||||||| |||||||| || ||||| ||||||| || | ||| | ||||||||| |||| Sbjct: 85606 cagcattatcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtac 85665 Query: 210 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 269 ||||||||||||||| || || || |||||||||||||| | | || ||||| || | Sbjct: 85666 gtacaattacagctctgatcacctctgatctttctagaggtgtgtttggtaatgcttcct 85725 Query: 270 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 329 |||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||||| Sbjct: 85726 tgatcacagcaacaataatgtcaccgatatgagcatatcggcgattac---tagctccta 85782 Query: 330 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 389 ||| || ||||||||| |||| ||| || || || || || |||||||| ||| || | | Sbjct: 85783 tgattctaatacacattaattctcgggccccgctgttatccgctacattcaaatggcttt 85842 Query: 390 gaggttgaatcatattatttt 410 ||||||||||||||| ||||| Sbjct: 85843 gaggttgaatcatatcatttt 85863
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 202 bits (102), Expect = 9e-49 Identities = 312/378 (82%), Gaps = 8/378 (2%) Strand = Plus / Plus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||||||||| |||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 79787 ttataatacttcagg-agctaatgaaactattttagtaaagtttaattgtctcaattccc 79845 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 | ||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| | Sbjct: 79846 gtgggatcgccccaaaaacgcgagttccttttggatttccttcttgatcaatgacaactg 79905 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 | |||||||| ||||| || ||||| | || | | | ||||| ||||||||| |||| Sbjct: 79906 cggcattgtcgtcatatcgtattatcgtcccattcttacgtttgagttctttacaagtac 79965 Query: 210 gtacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtc 267 ||||||||||||||| | ||||| ||||||||||||| | ||||||| | ||| || Sbjct: 79966 gtacaattacagctctgaccacttctgatctttctagagtagtatttggg--attgcttc 80023 Query: 268 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 327 |||||||||||||||||||| ||||||||| ||||||| || |||||| ||| ||| Sbjct: 80024 cttgattacagcaacaataacgtcaccaatatgagcatagcggcgattactagc---tcc 80080 Query: 328 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 387 ||| | |||||||||||||||||||| ||| || || |||||||||||||| ||| ||| Sbjct: 80081 tattattcgaatacacatcaattttctagccccgctgttgtctgctacattcaaataggt 80140 Query: 388 ctgaggttgaatcatatt 405 || |||||||||||||| Sbjct: 80141 ttgtggttgaatcatatt 80158
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 196 bits (99), Expect = 5e-47 Identities = 277/335 (82%), Gaps = 16/335 (4%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattct 79 |||||||||||| |||||| ||||| |||| |||| ||| |||| || ||||||| | Sbjct: 99133 ctactagtatttttaatacctcagg-agctcatgagactcttttagtgaaattcataagt 99075 Query: 80 ctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatca 139 ||||||||| || ||||| ||||||||||||||||||||||| || |||| ||||||| Sbjct: 99074 ctcaattcccgagcgatcgcaccaaaaactcgagttccttttggatttccttcttgatca 99015 Query: 140 attataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattct 199 || | ||||| |||||||| || ||||| ||||||| || | ||||| |||| Sbjct: 99014 atgacaaccg--------tcatcatatcgtattatcataccgttgtcacgtttgagttct 98963 Query: 200 ttacatgtacgtacaattacagctcgaattacttcgg----atctttctagaggcatttg 255 |||||||||||||||||||||||||| ||||||| | |||||||||||||||||| Sbjct: 98962 ttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatttt 98903 Query: 256 gggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgatt 315 ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct: 98902 gggcactgcttctttgattacagcaacaataacgtcaccaatatgagcatatcagtgatt 98843 Query: 316 accagcagctcctatgactcgaatacacatcaatt 350 || ||||||||| || ||||||||| ||||||| Sbjct: 98842 ac---cagctcctaagattcgaatacatatcaatt 98811
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 194 bits (98), Expect = 2e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 205 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1365 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 1306 Query: 265 gtctttgattacagcaacaataacatcaccaatacgagcatatcgc 310 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 gtctttgattacagcaataataacatcaccaatacgagcatatcgc 1260 Score = 161 bits (81), Expect = 3e-36 Identities = 101/105 (96%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 371 gctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttca 430 ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct: 1199 gctacatttaaaagggtctgaggttgaatcatattatttgg-tttccatttgttatttca 1141 Query: 431 a-tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 474 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1140 aatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 1096 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 249 gcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatc 308 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1261 gcatttggggcactgcgtctttgattacagcaataataacatcaccaatacgagcatatc 1202 Query: 309 gc 310 || Sbjct: 1201 gc 1200 Score = 73.8 bits (37), Expect = 5e-10 Identities = 51/57 (89%) Strand = Plus / Minus Query: 501 ttttagggttctatatntntaatcgaataaattgacttngnatgggcattttactgg 557 |||| ||||||||||| | |||||||| |||||||||| | |||||||||||||||| Sbjct: 1068 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 1012
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 172 bits (87), Expect = 8e-40 Identities = 146/163 (89%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| || Sbjct: 54859 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattccttgg 54917 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || ||||||||||| | |||||| ||||| || ||||||| |||||| |||||||||| Sbjct: 54918 cgattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcag 54976 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 |||||| |||||||| |||||||||||||||||||||||||| Sbjct: 54977 cattgttgtcatagcgtattattataccgtcttcgcatttgaa 55019
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 172 bits (87), Expect = 8e-40 Identities = 146/163 (89%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| || Sbjct: 137662 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattccttgg 137720 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || ||||||||||| | |||||| ||||| || ||||||| |||||| |||||||||| Sbjct: 137721 cgattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcag 137779 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 |||||| |||||||| |||||||||||||||||||||||||| Sbjct: 137780 cattgttgtcatagcgtattattataccgtcttcgcatttgaa 137822
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 172 bits (87), Expect = 8e-40 Identities = 146/163 (89%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 130073 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattcctcgg 130131 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || ||||||||||| | |||||| ||||| || ||||||| |||||| |||||||||| Sbjct: 130132 ccattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcag 130190 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 || ||| |||||||| |||||||||||||||||||||||||| Sbjct: 130191 cactgttgtcatagcgtattattataccgtcttcgcatttgaa 130233
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 172 bits (87), Expect = 8e-40 Identities = 146/163 (89%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 66843 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattcctcgg 66901 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || ||||||||||| | |||||| ||||| || ||||||| |||||| |||||||||| Sbjct: 66902 ccattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcag 66960 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 || ||| |||||||| |||||||||||||||||||||||||| Sbjct: 66961 cactgttgtcatagcgtattattataccgtcttcgcatttgaa 67003
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 160 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 331098 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 331047 Query: 161 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 220 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 331046 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330987 Query: 221 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 276 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330986 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330927 Query: 277 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 336 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330926 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330870 Query: 337 aatacacatcaatt 350 |||||| ||||||| Sbjct: 330869 aatacatatcaatt 330856 Score = 46.1 bits (23), Expect = 0.12 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattca 74 ||||||||||||||||||| ||||| |||| |||| ||| |||| || ||||||| Sbjct: 331166 ctactagtatttataatacctcagg-agctcatgagactctttttgtgaaattca 331113
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 160 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330288 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330237 Query: 161 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 220 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330236 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330177 Query: 221 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 276 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330176 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330117 Query: 277 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 336 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330116 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330060 Query: 337 aatacacatcaatt 350 |||||| ||||||| Sbjct: 330059 aatacatatcaatt 330046 Score = 46.1 bits (23), Expect = 0.12 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattca 74 ||||||||||||||||||| ||||| |||| |||| ||| |||| || ||||||| Sbjct: 330356 ctactagtatttataatacctcagg-agctcatgagactctttttgtgaaattca 330303
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 160 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330285 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330234 Query: 161 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 220 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330233 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330174 Query: 221 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 276 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330173 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330114 Query: 277 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 336 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330113 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330057 Query: 337 aatacacatcaatt 350 |||||| ||||||| Sbjct: 330056 aatacatatcaatt 330043 Score = 46.1 bits (23), Expect = 0.12 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattca 74 ||||||||||||||||||| ||||| |||| |||| ||| |||| || ||||||| Sbjct: 330353 ctactagtatttataatacctcagg-agctcatgagactctttttgtgaaattca 330300
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 160 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330142 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330091 Query: 161 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 220 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330090 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330031 Query: 221 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 276 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330030 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 329971 Query: 277 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 336 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 329970 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 329914 Query: 337 aatacacatcaatt 350 |||||| ||||||| Sbjct: 329913 aatacatatcaatt 329900 Score = 46.1 bits (23), Expect = 0.12 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattca 74 ||||||||||||||||||| ||||| |||| |||| ||| |||| || ||||||| Sbjct: 330210 ctactagtatttataatacctcagg-agctcatgagactctttttgtgaaattca 330157
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 190 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 245 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 37711 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 37652 Query: 246 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 305 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 37651 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 37592 Query: 306 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 350 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 37591 atcagtgattac---cagctcctaagattcgaatacatatcaatt 37550
>dbj|D13105.1|RICMT09 Oryza sativa (japonica cultivar-group) mitochondrial rp114 pseudogene, clone:pMTVSCT13 Length = 645 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%), Gaps = 15/254 (5%) Strand = Plus / Plus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 160 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 161 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 212 Query: 161 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 220 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 213 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 272 Query: 221 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 276 ||||| ||||||| | |||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 273 gctcgtcttacttctgtctgatctttctagagccattttgggcactgcttctttgattac 332 Query: 277 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 336 |||||||||||| || |||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 333 agcaacaataacgtccccaatatgagcatatcagtgattac---cagctcctaagattcg 389 Query: 337 aatacacatcaatt 350 |||||| ||||||| Sbjct: 390 aatacatatcaatt 403 Score = 46.1 bits (23), Expect = 0.12 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 20 ctactagtatttataatacttcaggcagctaatgaaactattttggtaaaattca 74 ||||||||||||||||||| ||||| |||| |||| ||| |||| || ||||||| Sbjct: 93 ctactagtatttataatacctcagg-agctcatgagactctttttgtgaaattca 146
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 153 bits (77), Expect = 7e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 395 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147871 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 147812 Query: 455 gtctttccagaaagaaaaacc 475 |||||||||||||||| |||| Sbjct: 147811 gtctttccagaaagaagaacc 147791 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 147753 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 147708
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 153 bits (77), Expect = 7e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 395 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 55574 Query: 455 gtctttccagaaagaaaaacc 475 |||||||||||||||| |||| Sbjct: 55573 gtctttccagaaagaagaacc 55553 Score = 44.1 bits (22), Expect = 0.48 Identities = 39/46 (84%) Strand = Plus / Minus Query: 512 tatatntntaatcgaataaattgacttngnatgggcattttactgg 557 ||||| | ||| |||| |||||||||| | ||||||||||| |||| Sbjct: 55515 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 55470
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 149 bits (75), Expect = 1e-32 Identities = 143/163 (87%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcgg 92 |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| || Sbjct: 5365 taatacttcatg-agcttatgaaactattttagtaaaattcaattctctcaattccttgg 5307 Query: 93 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 152 | || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| || Sbjct: 5306 cgattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtag 5248 Query: 153 cattgtcatcatagcggattattataccgtcttcgcatttgaa 195 || |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 5247 cactgtcgtcatagcgtattattatactgtcttcgcatttgaa 5205
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 119 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 178 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 33438 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 33379 Query: 179 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 238 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 33378 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 33319 Query: 239 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 298 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 33318 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 33259 Query: 299 cgagcatat 307 |||| |||| Sbjct: 33258 cgagtatat 33250
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 53 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 112 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 87867 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 87808 Query: 113 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 172 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 87807 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 87749 Query: 173 attataccgtcttcgcatttgaa 195 ||||||||||||||||||||||| Sbjct: 87748 attataccgtcttcgcatttgaa 87726
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 131 bits (66), Expect = 3e-27 Identities = 293/366 (80%), Gaps = 7/366 (1%) Strand = Plus / Minus Query: 47 gctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaa 106 ||||||||||||||||| || ||||| || | ||||||||| ||| || ||| |||| Sbjct: 45026 gctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaa 44967 Query: 107 actcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatag 166 | ||||||||||||||| || |||| || |||||| | |||||| ||||| |||||||| Sbjct: 44966 attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatac 44907 Query: 167 cggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcga 226 ||||||||||| | | ||| | ||||||||| ||||||||||||||||| | Sbjct: 44906 tttattattataccattactacgttttagttctttacaagtacgtacaattacagccctg 44847 Query: 227 attacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagcaacaa 284 || ||||| |||||||||| || | |||||| | ||| | ||||||||||||||||| Sbjct: 44846 atcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagcaacaa 44789 Query: 285 taacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacaca 344 || ||||||||| |||||| || |||||| ||| |||||||| ||||||||||| Sbjct: 44788 caatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaatacaca 44732 Query: 345 tcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcatat 404 |||||| || ||||| ||||| || |||||||||||| ||| |||||||||||||||| Sbjct: 44731 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatat 44672 Query: 405 tatttt 410 ||||| Sbjct: 44671 catttt 44666
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 127 bits (64), Expect = 4e-26 Identities = 179/216 (82%), Gaps = 1/216 (0%) Strand = Plus / Minus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 5904 ttataatacctcaggt-gctaatgaaactattttagtgaaatttaactgtctcaattccc 5846 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 149 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||||||| | Sbjct: 5845 gggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattataactg 5786 Query: 150 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 209 ||||||| |||||||| | ||||||||||||| | ||| | || |||||| |||| Sbjct: 5785 cagcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtac 5726 Query: 210 gtacaattacagctcgaattacttcggatctttcta 245 ||||||||||||||| || ||||| |||||||||| Sbjct: 5725 gtacaattacagctctgatcacttcagatctttcta 5690 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 268 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 327 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 5667 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 5611 Query: 328 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 387 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 5610 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 5551 Query: 388 ctgaggttgaatcatattatttt 410 |||||||||||||||| ||||| Sbjct: 5550 ttgaggttgaatcatatcatttt 5528
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 117 bits (59), Expect = 4e-23 Identities = 164/199 (82%) Strand = Plus / Plus Query: 47 gctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaa 106 ||||||||||||||||| || ||||| || | |||||||||| ||| || || | ||| Sbjct: 79725 gctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgattgcacaaaag 79784 Query: 107 actcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatag 166 | ||||||||||||||| || |||| ||||||||| | ||| |||||||| |||||||| Sbjct: 79785 attcgagttccttttggatttccttcttgatcaatgacaactgcagcattatcatcatac 79844 Query: 167 cggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcga 226 | ||||||||||||| | ||||| ||||||||| ||||||||||||||||||| Sbjct: 79845 tgaattattataccgttgctacgtttgagttctttacaagtacgtacaattacagctctg 79904 Query: 227 attacttcggatctttcta 245 || ||||| |||||||||| Sbjct: 79905 atcacttctgatctttcta 79923 Score = 81.8 bits (41), Expect = 2e-12 Identities = 118/143 (82%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 268 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 327 ||||||||||||||||| || ||||||||| ||||||||| |||||| ||| ||| Sbjct: 79946 tttgattacagcaacaacaatgtcaccaatataagcatatcgtcgattactagc---tcc 80002 Query: 328 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 387 || || |||||||||||||| || || ||||| ||||| || |||||||| ||| | || Sbjct: 80003 taggattcgaatacacatcagttcgcgtgctccgctattatcagctacattcaaatgagt 80062 Query: 388 ctgaggttgaatcatattatttt 410 |||||||||||||||| ||||| Sbjct: 80063 ttgaggttgaatcatatcatttt 80085
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Plus Query: 103 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 162 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 30545 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 30604 Query: 163 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 222 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 30605 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 30664 Query: 223 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 280 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 30665 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 30722 Query: 281 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 340 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 30723 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 30779 Query: 341 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 400 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 30780 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 30839 Query: 401 atattatttt 410 |||| ||||| Sbjct: 30840 atatcatttt 30849
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Minus Query: 103 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 162 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 114958 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 114899 Query: 163 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 222 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 114898 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 114839 Query: 223 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 280 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 114838 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 114781 Query: 281 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 340 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 114780 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 114724 Query: 341 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 400 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 114723 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 114664 Query: 401 atattatttt 410 |||| ||||| Sbjct: 114663 atatcatttt 114654
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 109 bits (55), Expect = 1e-20 Identities = 163/199 (81%) Strand = Plus / Plus Query: 47 gctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaa 106 ||||||||||||||||| || ||||| || | |||||||||| ||| || |||| ||| Sbjct: 970 gctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgattgcgcaaaag 1029 Query: 107 actcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatag 166 | ||||||||||||||| || |||| ||||||||||| ||| |||||||| |||||||| Sbjct: 1030 attcgagttccttttggatttccttcttgatcaattacaactgcagcattatcatcatac 1089 Query: 167 cggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcga 226 | ||||||||||||| | ||| | || |||||| || |||||||||||||||| Sbjct: 1090 tgaattattataccgttgctacgttttagttgtttacaagtccgtacaattacagctctg 1149 Query: 227 attacttcggatctttcta 245 || ||||| |||||||||| Sbjct: 1150 atcacttctgatctttcta 1168 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 375 catttaaaagggtctgaggttgaatcatattatttt 410 |||||||| | || |||||||||||||||| ||||| Sbjct: 1296 catttaaatgagtttgaggttgaatcatatcatttt 1331
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 109 bits (55), Expect = 1e-20 Identities = 119/139 (85%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 25 agtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaa 84 |||| |||||||||||| || ||| |||||||||||||| || |||||||||| |||||| Sbjct: 60553 agtacttataatacttcggg-agccaatgaaactattttcgtgaaattcaattgtctcaa 60611 Query: 85 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 144 ||||| |||| || ||||||||||||||||||||||| || |||| |||||||| | Sbjct: 60612 ttcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgac 60671 Query: 145 aaccgcagcattgtcatca 163 ||| || |||||||||||| Sbjct: 60672 aacggctgcattgtcatca 60690 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 323 gctcctatgactcgaatacacatcaattttcgagctccact 363 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 60847 gctcctagaactcgaatacacattatttttcgggctccact 60887
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 101 bits (51), Expect = 2e-18 Identities = 118/139 (84%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 25 agtatttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaa 84 |||| |||||| ||||| || ||| |||||||||||||| || |||||||||| |||||| Sbjct: 58649 agtacttataagacttcggg-agccaatgaaactattttagtgaaattcaattgtctcaa 58707 Query: 85 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 144 ||||| |||| || ||||||||||||||||||||||| || |||| |||||||| | Sbjct: 58708 ttcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgac 58767 Query: 145 aaccgcagcattgtcatca 163 ||| || |||||||||||| Sbjct: 58768 aacggctgcattgtcatca 58786 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 323 gctcctatgactcgaatacacatcaattttcgagctccact 363 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 58943 gctcctagaactcgaatacacattatttttcgggctccact 58983
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgc 434 |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 568 catttaaaagggtctgaggttgaatcatatcatttttatttgaatctgttatttcaatgc 509 Query: 435 aaa 437 ||| Sbjct: 508 aaa 506
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 207 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 257 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 94927 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 94877
>gb|M60180.1|OBECPRPB O.ammophila ribosomal protein L14 and S8 (rpl14, rps8) genes, 5' end and 3' end Length = 625 Score = 83.8 bits (42), Expect = 6e-13 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand = Plus / Plus Query: 30 ttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcct 89 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 524 ttataatacctcaggt-gctaatgaaactattttagtgaaacttaactctctcaattcgt 582 Query: 90 cggcaatcgcgccaaaaactcgagttccttttgg 123 ||||||||| ||||||||||| ||||||||||| Sbjct: 583 gggcaatcgcaccaaaaactcgggttccttttgg 616
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 382 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 322 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 370 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 196 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 252 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 187 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 243 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccaaaaactcgagttccttt 120 |||||||||||||||||||| Sbjct: 92 ccaaaaactcgagttccttt 111
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 382 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 100021 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 100069 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 196 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 252 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 99886 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 99942 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccaaaaactcgagttccttt 120 |||||||||||||||||||| Sbjct: 99791 ccaaaaactcgagttccttt 99810
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 81.8 bits (41), Expect = 2e-12 Identities = 112/135 (82%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 276 cagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactc 335 |||||||||||| ||||| ||| |||||||||| |||||| ||| ||| |||| || Sbjct: 1 cagcaacaataatgtcaccgatatgagcatatcgacgattactagc---tccgatgattc 57 Query: 336 gaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggtt 395 |||||||||| |||| |||||| ||||| || || || ||||| ||| |||| ||||||| Sbjct: 58 gaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttgaggtt 117 Query: 396 gaatcatattatttt 410 ||||||||| ||||| Sbjct: 118 gaatcatatcatttt 132
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 77.8 bits (39), Expect = 3e-11 Identities = 106/127 (83%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 37 acttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaat 96 |||||||| |||||| ||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 41481 acttcagg-agctaaagaaactattttagtaaaatttaagtctctcaattctctggcaac 41423 Query: 97 cgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcatt 156 | ||||||||||| |||||| |||| ||||||| ||||| || | |||||||||||| Sbjct: 41422 tggaccaaaaactcgtgttcctcttggattgccttcttgattgatgacaaccgcagcatt 41363 Query: 157 gtcatca 163 |||||| Sbjct: 41362 atcatca 41356 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 394 ||||||||||| | ||||||||||| || ||||| |||||||||||| | ||||||| Sbjct: 41187 cgaatacacatgagctttcgagctccgctgttgtcggctacatttaaataagactgaggt 41128 Query: 395 tgaatcat 402 |||||||| Sbjct: 41127 tgaatcat 41120
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 77.8 bits (39), Expect = 3e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 198 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 253 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 89363 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 89422 Query: 254 tggggcaatgcgtctttgattaca 277 | ||||| ||| |||||| ||||| Sbjct: 89423 ttgggcactgcttctttggttaca 89446
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 325 tcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaag 384 |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||||||| Sbjct: 76544 tcctataactcgaatgcacattagttttcgagctccactattatctgcaacatttaaata 76603 Query: 385 ggtctgaggttgaatcat 402 || |||||||||||||| Sbjct: 76604 agtttgaggttgaatcat 76621 Score = 73.8 bits (37), Expect = 5e-10 Identities = 113/137 (82%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 27 tatttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaatt 86 ||||||||| ||||| || |||||| ||||||||||| |||||||| ||||||| |||| Sbjct: 76250 tatttataaaacttctgg-agctaacgaaactattttagtaaaattagattctcttaatt 76308 Query: 87 cctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataa 146 | ||||| | ||||||||||||||||||||||| || |||| ||||| ||| | || Sbjct: 76309 ctctagcaattggaccaaaaactcgagttccttttggatttccttcttgattaataacaa 76368 Query: 147 ccgcagcattgtcatca 163 | || ||||| |||||| Sbjct: 76369 ctgctgcattatcatca 76385 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 194 aattctttacatgtacgtacaattacagctc 224 ||||||||||| ||||||||||||||||||| Sbjct: 76416 aattctttacacgtacgtacaattacagctc 76446
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 85 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 144 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 117502 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 117561 Query: 145 aaccgcagcattgtcatc 162 ||||| ||||||||||| Sbjct: 117562 aaccgttgcattgtcatc 117579
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 393 |||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||||| Sbjct: 79713 tcgaatacacatcaattttcgagctccactgttgtctgttacttttaaataactttgagg 79772 Query: 394 ttgaatcat 402 ||||||||| Sbjct: 79773 ttgaatcat 79781
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaatcatattatttt 410 |||||||||||||||||||||||||||||||||||| Sbjct: 561 catttaaaagggtctgaggttgaatcatattatttt 526
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/136 (83%), Gaps = 3/136 (2%) Strand = Plus / Plus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcc 88 |||||||||||||||| ||||| ||||||||||| |||||||| |||| | ||||| Sbjct: 79910 tttataatacttcaggt-gctaacgaaactattttagtaaaattagattcacgtaattc- 79967 Query: 89 tcg-gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 147 ||| |||| | ||||||||||||||||||||| || || |||| ||||| ||| ||||| Sbjct: 79968 tcgtgcaacagggccaaaaactcgagttcctttaggatttccttcttgattaataataac 80027 Query: 148 cgcagcattgtcatca 163 |||||||| |||||| Sbjct: 80028 tgcagcattatcatca 80043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 338 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 397 |||||||| ||||| || ||||||||||| || |||||||||||| || ||||||||| Sbjct: 80215 atacacattaatttgcgcgctccactattatcagctacatttaaataagtttgaggttga 80274 Query: 398 atcat 402 ||||| Sbjct: 80275 atcat 80279
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 69.9 bits (35), Expect = 8e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 160 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 127299 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 127248 Query: 161 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 220 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 127247 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 127188 Query: 221 gctc 224 |||| Sbjct: 127187 gctc 127184 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgat 137 ||||||||||||||||||||||| || |||| ||||| Sbjct: 126033 ccaaaaactcgagttccttttggatttccttcttgat 125997 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 101 ccaaaaactcgagttccttttgggttgcctttttgat 137 ||||||||||||||||||||||| || |||| ||||| Sbjct: 121959 ccaaaaactcgagttccttttggatttccttcttgat 121923
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 65.9 bits (33), Expect = 1e-07 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 29 tttataatacttcaggcagctaatgaaactattttggtaaaattcaattctct 81 |||||||||||||||| ||| |||||||||||||| |||||||| |||||||| Sbjct: 5586 tttataatacttcagg-agccaatgaaactattttagtaaaattgaattctct 5535 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 334 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 393 |||||||||||| |||| ||||||||| |||||||||||||| ||| || ||||| Sbjct: 5285 tcgaatacacattggttttttagctccactgttgtctgctacattcaaatacgtttgagg 5226 Query: 394 ttgaatcatatt 405 |||||||||||| Sbjct: 5225 ttgaatcatatt 5214
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 268 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 327 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 1258 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 1202 Query: 328 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 387 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 1201 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 1142 Query: 388 ctgaggttgaatcatattatttt 410 |||||||||||||||| ||||| Sbjct: 1141 ttgaggttgaatcatatcatttt 1119
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaatcatattatttt 410 |||||||||||||||||||||||||||||| ||||| Sbjct: 533 catttaaaagggtctgaggttgaatcatatgatttt 498
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 371 gctacatttaaaagggtctgaggttgaatcatattatttt 410 |||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2049 gctacattcaaaagggtctgaggttgaatcatatcatttt 2010
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 332 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 382 |||||||||||||| ||||| ||||| |||||||| || |||||||||||| Sbjct: 140455 actcgaatacacattaatttgcgagcaccactattatcagctacatttaaa 140505
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 66 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 108 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 20850 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 20808
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 338 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 397 |||||||| |||||||| ||||||||||| ||||| || |||| | || ||||||||| Sbjct: 16479 atacacattaattttcgtgctccactattatctgcgacgtttacatatgtttgaggttga 16420 Query: 398 atcatatta 406 ||||||||| Sbjct: 16419 atcatatta 16411
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaatcata 403 ||||||||||||||||||||||||||||| Sbjct: 543 catttaaaagggtctgaggttgaatcata 515
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 382 |||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 76668 cgaatacacatcaacttgcgagctccgctattatctgctacatctaaa 76715
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 382 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 28989 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 28942 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 ctttacatgtacgtacaattacagctcg 225 |||||| |||||||||||| |||||||| Sbjct: 29123 ctttacgtgtacgtacaataacagctcg 29096
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaatcat 402 |||||||||||||||||||||||||||| Sbjct: 558 catttaaaagggtctgaggttgaatcat 531
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 382 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 588 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 541 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 ctttacatgtacgtacaattacagctcg 225 |||||| |||||||||||| |||||||| Sbjct: 722 ctttacgtgtacgtacaataacagctcg 695
>gb|DQ069422.1| Ginkgo biloba ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 54.0 bits (27), Expect = 5e-04 Identities = 108/131 (82%), Gaps = 3/131 (2%) Strand = Plus / Minus Query: 33 taatacttcaggcagctaatgaaactattttggtaaaattcaattctctcaattcctcg- 91 ||||||||| || ||| |||| ||||||||| || ||||| |||| ||||||||| ||| Sbjct: 366 taatacttcggg-agccaatggaactatttttgtgaaattaaattgtctcaattc-tcga 309 Query: 92 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 151 |||| | |||||||||||||||||||| || || |||| |||||||| | ||| || Sbjct: 308 gcaactgaaccaaaaactcgagttcctttcggatttccttcctgatcaatgacaactgct 249 Query: 152 gcattgtcatc 162 ||||||||||| Sbjct: 248 gcattgtcatc 238
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 332 actcgaatacacatcaattttcgagctccactatt 366 |||||||||||||| ||||| |||||||||||||| Sbjct: 1744 actcgaatacacattaatttacgagctccactatt 1710 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 274 tacagcaacaataacatcaccaatacgagcata 306 |||||| ||||| ||||||||||| |||||||| Sbjct: 1799 tacagcgacaattacatcaccaattcgagcata 1767
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 57 ctattttggtaaaattcaattctctcaattc 87 ||||||| ||||||||||||||||||||||| Sbjct: 45211 ctattttagtaaaattcaattctctcaattc 45181
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 332 actcgaatacacatcaattttcgagctccactatt 366 |||||||||||||| ||||| |||||||||||||| Sbjct: 52478 actcgaatacacattaatttacgagctccactatt 52512 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 274 tacagcaacaataacatcaccaatacgagcata 306 |||||| ||||| ||||||||||| |||||||| Sbjct: 52423 tacagcgacaattacatcaccaattcgagcata 52455
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 338 atacacatcaattttcgagctccactattgtctgctacatt 378 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 879333 atacacatcaatttacgagcgccgctattgtctgcgacatt 879293
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 338 atacacatcaattttcgagctccactattgtctgctacatt 378 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 5047012 atacacatcaatttacgagcgccgctattgtctgcgacatt 5047052
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 48.1 bits (24), Expect = 0.031 Identities = 45/52 (86%) Strand = Plus / Minus Query: 351 ttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 402 |||||||||||||||| || |||||||||||| | |||||||||||||| Sbjct: 94493 ttcgagctccactattatcggctacatttaaataagattgaggttgaatcat 94442
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 282 caataacatcaccaatacgagcatatcgctgattaccagc 321 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 98741 caataacgtcaccaatatgagcatatcagtgattaccagc 98780
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 282 caataacatcaccaatacgagcatatcgctgattaccagc 321 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11796144 caataacgtcaccaatatgagcatatcagtgattaccagc 11796105
>dbj|AB077333.1| Ferula feruloides plastid DNA, intron region Length = 531 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaa 398 |||||||||||||||||||||||| Sbjct: 523 catttaaaagggtctgaggttgaa 500
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 282 caataacatcaccaatacgagcatatcgctgattaccagc 321 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11874555 caataacgtcaccaatatgagcatatcagtgattaccagc 11874516
>ref|NM_128441.3| Arabidopsis thaliana structural constituent of ribosome AT2G28820 mRNA, complete cds Length = 1156 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 272 attacagcaacaataacatcaccaatacgagcata 306 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 999 attacggcaacaacaacatcaccaatatgagcata 965
>emb|AL359081.10| Human DNA sequence from clone RP11-541F9 on chromosome 1, complete sequence Length = 109288 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 51 atgaaactattttggtaaaattcaatt 77 |||||||||||||||||| |||||||| Sbjct: 91500 atgaaactattttggtaacattcaatt 91474
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence Length = 107097 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 272 attacagcaacaataacatcaccaatacgagcata 306 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 38089 attacggcaacaacaacatcaccaatatgagcata 38123
>gb|AY219111.2| Arabidopsis thaliana hypothetical protein (At2g28820/F8N16.11) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 272 attacagcaacaataacatcaccaatacgagcata 306 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 1002 attacggcaacaacaacatcaccaatatgagcata 968
>dbj|AP000606.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24 Length = 82360 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 401 atattattttgatttcaatttgttatt 427 |||||||||||||||||| |||||||| Sbjct: 13778 atattattttgatttcaaattgttatt 13752
>gb|AC157473.1| Medicago truncatula chromosome 7 BAC clone mte1-11e4, complete sequence Length = 125310 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 376 atttaaaagggtctgaggttgaa 398 ||||||||||||||||||||||| Sbjct: 65424 atttaaaagggtctgaggttgaa 65402
>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence Length = 180642 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 437 aaggatgaaagaaatattgtctttcc 462 |||||||||||||||||| ||||||| Sbjct: 116209 aaggatgaaagaaatattttctttcc 116234
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 attattttgatttcaatttgtt 424 |||||||||||||||||||||| Sbjct: 90746 attattttgatttcaatttgtt 90725
>dbj|AB077440.1| Incarvillea potaninii plastid DNA, intron region Length = 536 Score = 44.1 bits (22), Expect = 0.48 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaatcatat 404 |||||||||||| ||||||||||||||||| Sbjct: 528 catttaaaaggg-ctgaggttgaatcatat 500
>dbj|AB077334.1| Zygophyllum pterocarpum plastid DNA, intron region Length = 553 Score = 44.1 bits (22), Expect = 0.48 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 375 catttaaaagggtctgaggttgaatcatat 404 |||||||||||| ||||||||||||||||| Sbjct: 545 catttaaaaggg-ctgaggttgaatcatat 517
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 437 aaggatgaaagaaatattgtctttcc 462 |||||||||||||||||| ||||||| Sbjct: 184750 aaggatgaaagaaatattttctttcc 184775
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ccttttgggttgcctttttga 136 ||||||||||||||||||||| Sbjct: 1617545 ccttttgggttgcctttttga 1617565
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 426 tttcaatgcaaaaggatgaaagaaa 450 ||||||| ||||||||||||||||| Sbjct: 58265 tttcaatacaaaaggatgaaagaaa 58241
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 atgaaactattttggtaaaat 71 ||||||||||||||||||||| Sbjct: 13532 atgaaactattttggtaaaat 13552
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgtctttccagaaagaaaaac 474 ||||||||||||||||||||| Sbjct: 87284 tgtctttccagaaagaaaaac 87304
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 acagcaacaataacatcacca 295 ||||||||||||||||||||| Sbjct: 263 acagcaacaataacatcacca 283
>emb|AL359821.11| Human DNA sequence from clone RP11-175G14 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and part of a novel gene, complete sequence Length = 117951 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 443 gaaagaaatattgtctttccagaaa 467 |||||||||||||||||| |||||| Sbjct: 43956 gaaagaaatattgtctttacagaaa 43980
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 atttcaatttgttatttcaat 432 ||||||||||||||||||||| Sbjct: 148025 atttcaatttgttatttcaat 148045
>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3 Contains a chromosome 9 open reading frame 78 (C9orf78) pseudogene, a novel gene (MGC13186), the 3' end of a novel gene (FLJ11383) and a CpG island, complete sequence Length = 155065 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 aatgaaactattttggtaaaa 70 ||||||||||||||||||||| Sbjct: 66463 aatgaaactattttggtaaaa 66483
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 tttcaatttgttatttcaatgcaaa 437 ||||||||||| ||||||||||||| Sbjct: 83648 tttcaatttgtaatttcaatgcaaa 83672
>gb|AY835431.1| Pseudendoclonium akinetum chloroplast, complete genome Length = 195867 Score = 42.1 bits (21), Expect = 1.9 Identities = 57/69 (82%) Strand = Plus / Minus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 394 ||||| |||||||||||| || || ||||| || ||||||||||||| || |||||| Sbjct: 31433 cgaatgcacatcaatttttttgcaccgctattatcagctacatttaaaatagtttgaggt 31374 Query: 395 tgaatcata 403 |||||||| Sbjct: 31373 cgaatcata 31365
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 aaaggatgaaagaaatattgt 456 ||||||||||||||||||||| Sbjct: 10896 aaaggatgaaagaaatattgt 10876
>dbj|AK034773.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430035O09 product:RAD17 homolog (S. pombe), full insert sequence Length = 2615 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 ttattttgatttcaatttgtt 424 ||||||||||||||||||||| Sbjct: 1994 ttattttgatttcaatttgtt 2014
>gb|AC109358.3| Homo sapiens BAC clone RP11-648D16 from 2, complete sequence Length = 49153 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 attttggtaaaattcaattct 79 ||||||||||||||||||||| Sbjct: 27739 attttggtaaaattcaattct 27719
>gb|AC073885.5| Homo sapiens BAC clone RP11-70L16 from 2, complete sequence Length = 120379 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 taaaattcaattctctcaatt 86 ||||||||||||||||||||| Sbjct: 93691 taaaattcaattctctcaatt 93671
>gb|AF283525.1|AF283519S7 Homo sapiens FIP2 gene, exons 11, 12 and 13 Length = 5047 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 atttcaatttgttatttcaat 432 ||||||||||||||||||||| Sbjct: 151 atttcaatttgttatttcaat 171
>dbj|AK120872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M09, full insert sequence Length = 5675 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 tttcaatttgttatttcaatgcaaa 437 ||||||||||| ||||||||||||| Sbjct: 2487 tttcaatttgtaatttcaatgcaaa 2511
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 atgaaactattttggtaaaat 71 ||||||||||||||||||||| Sbjct: 106739 atgaaactattttggtaaaat 106759
>gb|AF050665.1|AF050665 Spirogyra maxima tRNA-Ile gene, complete sequence; and ribosomal protein L23 (rpl23), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), ribosomal protein L22 (rpl22), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein S8 (rps8), initiation factor A (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and RNA polymerase alpha subunit (rpoA) genes, complete cds, chloroplast genes for chloroplast products Length = 8794 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 335 cgaatacacatcaattttcgagctccact 363 ||||||||||| ||||| ||||||||||| Sbjct: 5290 cgaatacacattaatttacgagctccact 5262
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctac 375 ||||||||||| | ||||| ||| |||||||| |||||||| Sbjct: 100999 cgaatacacattatttttctagcgccactattatctgctac 101039
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 acagcaacaataacatcacca 295 ||||||||||||||||||||| Sbjct: 6095 acagcaacaataacatcacca 6075
>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 ttattttgatttcaatttgtt 424 ||||||||||||||||||||| Sbjct: 79695 ttattttgatttcaatttgtt 79675
>ref|XM_639569.1| Dictyostelium discoideum histidine kinase (DDB0185039), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cagcaacaataacatcacca 295 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_639498.1| Dictyostelium discoideum histidine kinase DhkI (DDB0217151), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cagcaacaataacatcacca 295 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_634860.1| Dictyostelium discoideum hypothetical protein (DDB0186277), partial mRNA Length = 4602 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 tattttgatttcaatttgttattt 428 ||||||||||||||||| |||||| Sbjct: 413 tattttgatttcaattttttattt 390
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctttccagaaagaaaaacc 475 |||||||||||||||||||| Sbjct: 127972 tctttccagaaagaaaaacc 127953
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tactagtatttataatactt 40 |||||||||||||||||||| Sbjct: 140243 tactagtatttataatactt 140224
>gb|AY681321.1| Agelena orientalis toxin-like structure Agel_24 precursor, mRNA, complete cds Length = 378 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 attttgatttcaatttgtta 425 |||||||||||||||||||| Sbjct: 245 attttgatttcaatttgtta 264
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tctttgattacagcaacaat 285 |||||||||||||||||||| Sbjct: 129128 tctttgattacagcaacaat 129147
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 tattgtctgctacatttaaa 382 |||||||||||||||||||| Sbjct: 112737 tattgtctgctacatttaaa 112756
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 tctgctacatttaaaagggt 387 |||||||||||||||||||| Sbjct: 68129 tctgctacatttaaaagggt 68148
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 gtcttcgcatttgaattctt 200 |||||||||||||||||||| Sbjct: 71969 gtcttcgcatttgaattctt 71950
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 tgattacagcaacaataaca 289 |||||||||||||||||||| Sbjct: 82901 tgattacagcaacaataaca 82920
>emb|AL603882.13| Human DNA sequence from clone RP11-630I5 on chromosome 1 Contains the 5' end of the gene for microtubule associated testis specific serine/threonine protein kinase (MAST205), a ribosomal protein L6 (RPL6) pseudogene and a CpG island, complete sequence Length = 78745 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 aaatattgtctttccagaaa 467 |||||||||||||||||||| Sbjct: 30144 aaatattgtctttccagaaa 30163
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctttccagaaagaaaaacc 475 |||||||||||||||||||| Sbjct: 21328 tctttccagaaagaaaaacc 21309
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 tcaatgcaaaaggatgaaag 447 |||||||||||||||||||| Sbjct: 72832 tcaatgcaaaaggatgaaag 72851
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 atgcaaaaggatgaaagaaatatt 454 ||||||||||| |||||||||||| Sbjct: 40830 atgcaaaaggaagaaagaaatatt 40853
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ttcctcggcaatcgcgccaa 104 |||||||||||||||||||| Sbjct: 190554 ttcctcggcaatcgcgccaa 190535
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 aagaaatattgtctttccag 464 |||||||||||||||||||| Sbjct: 135640 aagaaatattgtctttccag 135659
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 aatcatattattttgatttc 416 |||||||||||||||||||| Sbjct: 64510 aatcatattattttgatttc 64491
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 accaatacgagcatatcgct 311 |||||||||||||||||||| Sbjct: 204840 accaatacgagcatatcgct 204859
>gb|AC108100.2| Homo sapiens chromosome 5 clone RP11-125A21, complete sequence Length = 85231 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 atttcaatttgttatttcaa 431 |||||||||||||||||||| Sbjct: 32554 atttcaatttgttatttcaa 32573
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 catttgaattctttacatgt 207 |||||||||||||||||||| Sbjct: 65739 catttgaattctttacatgt 65720
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 atgcaaaaggatgaaagaaatatt 454 ||||||||||| |||||||||||| Sbjct: 197474 atgcaaaaggaagaaagaaatatt 197497
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 caattataaccgcagcattgtcat 161 ||||||||||| |||||||||||| Sbjct: 22762 caattataacctcagcattgtcat 22785
>gb|AF362371.1|AF362371 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds Length = 6074 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cagcaacaataacatcacca 295 |||||||||||||||||||| Sbjct: 1666 cagcaacaataacatcacca 1685
>gb|AC103567.2| Caenorhabditis elegans cosmid Y51F10, complete sequence Length = 89249 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 taatgaaactattttggtaaaatt 72 |||||||||| ||||||||||||| Sbjct: 60315 taatgaaacttttttggtaaaatt 60338
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 tattttgatttcaatttgttattt 428 ||||||||||| |||||||||||| Sbjct: 1406237 tattttgattttaatttgttattt 1406214
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctacatt 378 ||||||||||| | |||| ||| |||||||| ||||||||||| Sbjct: 15771 cgaatacacattatttttttagcgccactattatctgctacatt 15814
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cagcaacaataacatcacca 295 |||||||||||||||||||| Sbjct: 42174 cagcaacaataacatcacca 42155
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 catttgaattctttacatgt 207 |||||||||||||||||||| Sbjct: 143582 catttgaattctttacatgt 143601
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 atgcaaaaggatgaaagaaatatt 454 ||||||||||| |||||||||||| Sbjct: 256147 atgcaaaaggaagaaagaaatatt 256124
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 tattttgatttcaatttgttattt 428 ||||||| |||||||||||||||| Sbjct: 28243 tattttgttttcaatttgttattt 28266
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ttcctcggcaatcgcgccaa 104 |||||||||||||||||||| Sbjct: 4645443 ttcctcggcaatcgcgccaa 4645424
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 40.1 bits (20), Expect = 7.6 Identities = 59/72 (81%) Strand = Plus / Minus Query: 338 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 397 |||||||| | |||| ||||||||| || || |||||| ||||| ||||||| |||| Sbjct: 103777 atacacattatttttttagctccactgttatcagctacagttaaataagtctgagtttga 103718 Query: 398 atcatattattt 409 ||||||| |||| Sbjct: 103717 atcatataattt 103706
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ttcctcggcaatcgcgccaa 104 |||||||||||||||||||| Sbjct: 4620428 ttcctcggcaatcgcgccaa 4620409
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 attttggtaaaattcaattc 78 |||||||||||||||||||| Sbjct: 2952252 attttggtaaaattcaattc 2952271
>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence Length = 157232 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tctgctacatttaaaagggt 387 |||||||||||||||||||| Sbjct: 141843 tctgctacatttaaaagggt 141824
>gb|AC158600.17| Mus musculus 10 BAC RP24-211K19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165879 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tactagtatttataatactt 40 |||||||||||||||||||| Sbjct: 72121 tactagtatttataatactt 72140 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tactagtatttataatactt 40 |||||||||||||||||||| Sbjct: 19820 tactagtatttataatactt 19801
>emb|CR385050.10| Zebrafish DNA sequence from clone DKEY-22I16 in linkage group 1, complete sequence Length = 145760 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 tattttgatttcaatttgtt 424 |||||||||||||||||||| Sbjct: 109311 tattttgatttcaatttgtt 109292
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 335 cgaatacacatcaattttcgagctccactattgtctgctacatt 378 ||||||||||| | ||| || ||||||||||| ||||| ||||| Sbjct: 84071 cgaatacacataattttacgggctccactattatctgcaacatt 84114 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 194 aattctttacatgtacgtacaattacagctcg 225 ||||||||||| || ||||| ||||||||||| Sbjct: 83933 aattctttacaagtgcgtactattacagctcg 83964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,657,262 Number of Sequences: 3902068 Number of extensions: 5657262 Number of successful extensions: 119069 Number of sequences better than 10.0: 231 Number of HSP's better than 10.0 without gapping: 247 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 116443 Number of HSP's gapped (non-prelim): 2477 length of query: 557 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 534 effective length of database: 17,143,297,704 effective search space: 9154520973936 effective search space used: 9154520973936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
