| Clone Name | rbags1k21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC016700.8| Homo sapiens BAC clone RP11-175A7 from 2, complete sequence Length = 177995 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 acttttcttacaaaataatcagctaa 26 |||||||||||||||||| ||||||| Sbjct: 86048 acttttcttacaaaataaacagctaa 86073
>emb|Z80107.2|HS197J16 Human DNA sequence from clone RP1-197J16 on chromosome X Contains a histone H2B family pseudogene, a novel pseudogene and a NADH dehydrogenase 6 (MTND6) pseudogene, complete sequence Length = 110715 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ttcttacaaaataatcagct 24 |||||||||||||||||||| Sbjct: 18793 ttcttacaaaataatcagct 18774
>gb|AE017134.1| Yersinia pestis biovar Medievalis str. 91001 section 8 of 16 of the complete genome Length = 290029 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 acaaaataatcagctaact 28 ||||||||||||||||||| Sbjct: 140423 acaaaataatcagctaact 140405
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 acaaaataatcagctaact 28 ||||||||||||||||||| Sbjct: 2395095 acaaaataatcagctaact 2395113
>gb|AC132588.4| Mus musculus BAC clone RP24-258L16 from chromosome 10, complete sequence Length = 136807 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 tgatggaggacaacataca 112 ||||||||||||||||||| Sbjct: 53959 tgatggaggacaacataca 53941
>emb|AL035454.18|HS1002M8 Human DNA sequence from clone RP5-1002M8 on chromosome 20p11.21-11.23 Contains the 3' end of the NAT5 gene for N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae), the CRNKL1 gene for crooked neck-like 1 (Drosophila) (Crn), the 5' end of the C20orf26 gene for chromosome 20 open reading frame 26 (C20orf26) and a CpG island, complete sequence Length = 111768 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acttttcttacaaaataat 19 ||||||||||||||||||| Sbjct: 27973 acttttcttacaaaataat 27955
>emb|AL021978.1|HS147M19 Human DNA sequence from clone RP1-147M19 on chromosome 6p22.1-22.3 Contains the 3' end of the DTNBP1 gene for dystobrevin binding protein 1, complete sequence Length = 73087 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acttttcttacaaaataat 19 ||||||||||||||||||| Sbjct: 42824 acttttcttacaaaataat 42842
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 acaaaataatcagctaact 28 ||||||||||||||||||| Sbjct: 2452383 acaaaataatcagctaact 2452365
>emb|AJ414151.1| Yersinia pestis strain CO92 complete genome; segment 11/20 Length = 334050 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 acaaaataatcagctaact 28 ||||||||||||||||||| Sbjct: 159097 acaaaataatcagctaact 159079
>emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in linkage group 5, complete sequence Length = 207800 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acttttcttacaaaataat 19 ||||||||||||||||||| Sbjct: 12348 acttttcttacaaaataat 12330
>dbj|AK137649.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930012O12 product:unclassifiable, full insert sequence Length = 4700 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 tgatggaggacaacataca 112 ||||||||||||||||||| Sbjct: 3281 tgatggaggacaacataca 3263
>emb|BX511248.7| Zebrafish DNA sequence from clone CH211-173N20 in linkage group 5, complete sequence Length = 142117 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 tggaggacaacatacaaat 115 ||||||||||||||||||| Sbjct: 117016 tggaggacaacatacaaat 117034
>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete sequence Length = 18062 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 tgaggtaagaatatcacca 152 ||||||||||||||||||| Sbjct: 9502 tgaggtaagaatatcacca 9484
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence Length = 54313 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 tgaggtaagaatatcacca 152 ||||||||||||||||||| Sbjct: 53784 tgaggtaagaatatcacca 53766
>gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, complete sequence Length = 180660 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 145 tatcaccatgactgaggca 163 ||||||||||||||||||| Sbjct: 24192 tatcaccatgactgaggca 24210 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,078,403 Number of Sequences: 3902068 Number of extensions: 1078403 Number of successful extensions: 70854 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70799 Number of HSP's gapped (non-prelim): 55 length of query: 167 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 145 effective length of database: 17,147,199,772 effective search space: 2486343966940 effective search space used: 2486343966940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)