ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1j12 |
|---|---|
| Clone Library Name | barley_pub |
>NUDC2_RAT (Q5M823) NudC domain-containing protein 2| Length = 157 Score = 60.8 bits (146), Expect = 7e-10 Identities = 26/55 (47%), Positives = 38/55 (69%) Frame = -1 Query: 380 ITLQKREKGKTWASPIKGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSG 216 +T KR+ W S ++ + + DP+ DQ Q++L L+RFQ+ENPGFDFS A+ SG Sbjct: 89 LTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISG 143
>NUDC2_MOUSE (Q9CQ48) NudC domain-containing protein 2| Length = 157 Score = 60.8 bits (146), Expect = 7e-10 Identities = 26/55 (47%), Positives = 38/55 (69%) Frame = -1 Query: 380 ITLQKREKGKTWASPIKGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSG 216 +T KR+ W S ++ + + DP+ DQ Q++L L+RFQ+ENPGFDFS A+ SG Sbjct: 89 LTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISG 143
>NUDC2_HUMAN (Q8WVJ2) NudC domain-containing protein 2| Length = 157 Score = 60.8 bits (146), Expect = 7e-10 Identities = 26/55 (47%), Positives = 38/55 (69%) Frame = -1 Query: 380 ITLQKREKGKTWASPIKGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSG 216 +T KR+ W S ++ + + DP+ DQ Q++L L+RFQ+ENPGFDFS A+ SG Sbjct: 89 LTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISG 143
>EFG_THICU (O50565) Elongation factor G (EF-G)| Length = 702 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/60 (33%), Positives = 28/60 (46%) Frame = -1 Query: 395 DGELHITLQKREKGKTWASPIKGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSG 216 D E ITL+K + P+ Q ADQE+ + LQR +E+P F + SG Sbjct: 395 DPESIITLEKM----VFPEPVISQAVEPKTKADQEKMGIALQRVAQEDPSFRVKTDEESG 450
>EFG_BORPE (Q7VTD5) Elongation factor G (EF-G)| Length = 700 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -1 Query: 395 DGELHITLQKREKGKTWASPIKGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSG 216 D + HI L++ E + P+ Q ADQE+ L L R +E+P F + SG Sbjct: 397 DIDSHILLERME----FPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESG 452
>EFG1_BORPA (Q7W2F8) Elongation factor G 1 (EF-G 1)| Length = 700 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -1 Query: 395 DGELHITLQKREKGKTWASPIKGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSG 216 D + HI L++ E + P+ Q ADQE+ L L R +E+P F + SG Sbjct: 397 DIDSHILLERME----FPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESG 452
>EFG1_BORBR (Q7WRC7) Elongation factor G 1 (EF-G 1)| Length = 700 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -1 Query: 395 DGELHITLQKREKGKTWASPIKGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSG 216 D + HI L++ E + P+ Q ADQE+ L L R +E+P F + SG Sbjct: 397 DIDSHILLERME----FPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESG 452
>HAK1_DEBOC (P50505) High affinity potassium transporter| Length = 821 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Frame = -1 Query: 158 AQKIMLDHRCILSNVTTVPIAHVTCENNVL--SDYS 57 A K L+++CIL+ T+PI H+ ENN++ DYS Sbjct: 726 AIKFNLNNKCILTKPCTIPILHI-FENNLIRSHDYS 760
>NUDC_EMENI (P17624) Nuclear movement protein nudC| Length = 198 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/26 (42%), Positives = 21/26 (80%) Frame = -1 Query: 302 ADQEQKRLMLQRFQEENPGFDFSQAQ 225 +D+++K +L++FQ+E+P DFS A+ Sbjct: 171 SDEQRKMDILKKFQKEHPEMDFSNAK 196
>GLUA2_ORYSA (P07730) Glutelin type-A 2 precursor (Glutelin type II) [Contains:| Glutelin type-A 2 acidic chain; Glutelin type-A 2 basic chain] Length = 499 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -1 Query: 332 KGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFSGTCPD 204 +G L PYA+ QEQ++ +Q + G + Q+Q+ CP+ Sbjct: 265 RGLSLLQPYASLQEQEQGQMQSREHYQEG-GYQQSQYGSGCPN 306
>CDGT_BACS8 (P17692) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) (Raw-starch-digesting amylase) Length = 713 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -1 Query: 284 RLMLQRFQEENPGFDFSQAQFSGTCPDPRTFMGG 183 ++ RF + NP + + A F GTC + R + GG Sbjct: 46 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 79
>CDGT2_BACCI (P43379) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 713 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -1 Query: 284 RLMLQRFQEENPGFDFSQAQFSGTCPDPRTFMGG 183 ++ RF + NP + + A F GTC + R + GG Sbjct: 46 QIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGG 79
>RL32_MYCMO (Q6KHT6) 50S ribosomal protein L32| Length = 64 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%) Frame = -3 Query: 168 KKLSSKNHAGSSMHLVKCDNCT-----YRTC 91 K+L +HA +LVKC NC+ +RTC Sbjct: 14 KRLRRSHHALDIQNLVKCSNCSQKIQQHRTC 44
>PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor| (Polygalacturonase-inhibiting protein) (PGIP-2) Length = 330 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Frame = -2 Query: 250 LGLTSRRLSSVVPALTQGPSWVEFTLIE-----EAQL----KKSCWIIDASCQM*QLYLS 98 L L+ +LS +P P + L +A + KK+ WI+D S M Q LS Sbjct: 197 LFLSHNQLSGTIPKSLGNPDFYRIDLSRNKLQGDASILFGAKKTTWIVDISRNMFQFDLS 256 Query: 97 HM*LVKTM 74 + L KT+ Sbjct: 257 KVKLAKTL 264
>Y5G5_ENCCU (Q8STI0) Hypothetical protein ECU05_1650/ECU11_0080| Length = 116 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 306 CCRPGTETAYAAKVSRRESWV*LLAGSVQWY 214 C +PG E + V RR L G +QWY Sbjct: 73 CMKPGREKRWKGSVRRRSLENFRLRGGIQWY 103
>OSBL5_MOUSE (Q9ER64) Oxysterol-binding protein-related protein 5 (OSBP-related| protein 5) (ORP-5) (Oxysterol-binding protein homolog 1) Length = 874 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = -1 Query: 359 KGKTWASPIKGQ-GSLDPYA----ADQEQKRLMLQRFQEENPGFDFSQAQFSGTCPDPRT 195 +G T+ ++ + G LD + +E K LM ++ PG D S+ +PR+ Sbjct: 338 RGTTYVEQVQEELGELDETSQVETVSEENKSLMWVLLRQLRPGMDLSRVVLPTFVLEPRS 397 Query: 194 FMG 186 F+G Sbjct: 398 FLG 400
>CDGT_BACS2 (P31746) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 703 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -1 Query: 284 RLMLQRFQEENPGFDFSQAQFSGTCPDPRTFMGG 183 +++ RF + NPG + S A FS C D + GG Sbjct: 44 QIVTDRFSDGNPGNNPSGAIFSQNCIDLHKYCGG 77
>CDGT_BACS3 (P09121) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 712 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -1 Query: 284 RLMLQRFQEENPGFDFSQAQFSGTCPDPRTFMGG 183 ++ RF + NP + + A F G+C + R + GG Sbjct: 46 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 79
>YLK1_CAEEL (P41949) Hypothetical protein D1044.1| Length = 382 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -1 Query: 314 DPYAADQEQKRLMLQRFQEENPGFDFSQAQFSGTCPDPRTFMG 186 DP AD+ + L QE DFS QFSG P PR++ G Sbjct: 84 DPDNADENMEILRTLTAQEVTFYSDFSGIQFSG-FPIPRSYYG 125
>CDGT_BACS0 (P05618) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 713 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -1 Query: 284 RLMLQRFQEENPGFDFSQAQFSGTCPDPRTFMGG 183 ++ RF + NP + + A F G+C + R + GG Sbjct: 46 QIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGG 79
>SCA4_RICFE (Q9AJ37) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa| antigen) (Protein PS 120) Length = 1039 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -1 Query: 299 DQEQKRLMLQRFQEE---NPGFDFSQAQFSGTCPDPRTFMGGIHTD*RSS 159 +QEQK Q +E + GF F+ A + + P + GGI +D ++S Sbjct: 64 EQEQKEYFSQTTPQELEADDGFSFTPASSTQSTPSISSLSGGISSDSQTS 113
>LITD_LATMA (Q25338) Delta-latroinsectotoxin precursor (Delta-LIT)| Length = 1214 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 9/90 (10%) Frame = -1 Query: 389 ELHITLQKREKG-----KTWASPIKGQGSLDPYAA----DQEQKRLMLQRFQEENPGFDF 237 E+ +Q KG W+ P QG+ P +++ RL+ ++F P Sbjct: 394 EVRYAVQYESKGMYSKFSEWSEPFTVQGNACPTIKVRVDPKKRNRLIFRKFNSGKP---- 449 Query: 236 SQAQFSGTCPDPRTFMGGIHTD*RSSAQKI 147 QF+GT +T IH D +A I Sbjct: 450 ---QFAGTMTHSQTNFKDIHRDLYDAALNI 476 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,288,499 Number of Sequences: 219361 Number of extensions: 1213140 Number of successful extensions: 2573 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2529 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2573 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
