>VE6_BPV2 (P11302) Protein E6|
          Length = 137

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 390 NDPDCNTWSNDQRALCYDCQSCKAGVLAN 304
           N+P C T SN  R  CYDC  C+ G  +N
Sbjct: 109 NEPFCKTRSNIIRGRCYDC--CRHGSRSN 135

>DNAJ8_ARATH (Q9SAG8) Chaperone protein dnaJ 8, chloroplast precursor (AtJ8)|
           (AtDjC8)
          Length = 163

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 441 TYQSETMWVKPSGFNATNDPDCNTW 367
           T + E   V   G N  NDPDC+TW
Sbjct: 117 TEEFEPFDVYDEGLNGMNDPDCDTW 141

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -3

Query: 500  PTTSPRSSLDAASPQLGATSPTRARPCGSNLLASTLPMTLTATRGRMIRGPSATTAS 330
            PT++P      A P L  T  T   P  + +L    P + TAT       PSAT  S
Sbjct: 1100 PTSAPLGPPSQAPPSLVYTVATSTTPPAATILPKGPPASATATPAPTSPFPSATAGS 1156

>CRX_BOVIN (Q9XSK0) Cone-rod homeobox protein|
          Length = 299

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
 Frame = -3

Query: 494 TSPRSSLDAASPQLGAT---SPTRARPCGSNLL----------ASTLPMTLTATRGRMIR 354
           TSPRSS D     LG +   SP    P GS             AS  P+      G +  
Sbjct: 123 TSPRSSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVAS 182

Query: 353 GPSATTASHA 324
           GPS T+A +A
Sbjct: 183 GPSLTSAPYA 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,261,286
Number of Sequences: 219361
Number of extensions: 1111681
Number of successful extensions: 2774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2773
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)