ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
2dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
3dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
4dbj|AK108036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
5ref|NM_196588.1| Oryza sativa (japonica cultivar-group) putative... 48 0.040
6gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.040
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.040
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.040
9gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725... 46 0.16
10gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, compl... 46 0.16
11gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.63
12gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.63
13emb|CR774195.4| Zebrafish DNA sequence from clone DKEY-73P2 in l... 44 0.63
14emb|CR352244.8| Zebrafish DNA sequence from clone CH211-131E11 i... 44 0.63
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.63
16emb|BX855590.3| Zebrafish DNA sequence from clone CH211-245N8, c... 44 0.63
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.63
18emb|AL359846.11| Human DNA sequence from clone RP11-413C10 on ch... 42 2.5
19gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
20gb|DQ241376.1| Fundulus heteroclitus estrogen receptor-related r... 42 2.5
21gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-f... 42 2.5
22gb|AC127070.10| Homo sapiens 12 BAC RP11-46H11 (Roswell Park Can... 42 2.5
23dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
24dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
25dbj|AB081121.2| Phanerochaete chrysosporium mRNA for beta-glucos... 42 2.5
26dbj|AK107437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
27dbj|AK068205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
28gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete se... 42 2.5
29gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F1... 42 2.5
30gb|AF036873.1|AF036873 Phanerochaete chrysosporium cellulose-bin... 42 2.5
31emb|CT030637.9| Mouse DNA sequence from clone RP23-123H11 on chr... 42 2.5
32ref|NM_196586.1| Oryza sativa (japonica cultivar-group) putative... 40 9.8
33ref|NM_196641.1| Oryza sativa (japonica cultivar-group) hypothet... 40 9.8
34ref|NM_196615.1| Oryza sativa (japonica cultivar-group) putative... 40 9.8
35gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
36gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 9.8
37gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, comp... 40 9.8
38gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 9.8
39gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome... 40 9.8
40emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 i... 40 9.8
41gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
42gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
43gb|AF218774.1|AF218774 Lycopersicon esculentum putative water ch... 40 9.8
44gb|AC161247.2| Mus musculus BAC clone RP24-447J22 from chromosom... 40 9.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 509      gagcttgccttcgcagatgaccttgagcctgtccagcccgtatctgtc 556
                ||||||||  |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 27300954 gagcttgctctcgcagatgagcttgagcctctccagcccgtacctgtc 27301001



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                            
Query: 627      tcggtgtagatgaagtgaagcaatgccttgaacaccacagcctccatgtcctcgatctcc 686
                ||||||||||||||||| ||||  | | |||| ||| | ||||||||||||| |||||| 
Sbjct: 27298101 tcggtgtagatgaagtggagcagggtcctgaagacctctgcctccatgtccttgatctcg 27298160

                                             
Query: 687      acacggtgcgagcatttctccttcatgtc 715
                |  |  ||||||  |||||||||||||||
Sbjct: 27298161 atgctctgcgagtctttctccttcatgtc 27298189



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 668      ctccatgtcctcgatctccac 688
                |||||||||||||||||||||
Sbjct: 26879296 ctccatgtcctcgatctccac 26879276
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>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0637D03
          Length = 180159

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 509    gagcttgccttcgcagatgaccttgagcctgtccagcccgtatctgtc 556
              ||||||||  |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 157970 gagcttgctctcgcagatgagcttgagcctctccagcccgtacctgtc 158017



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                          
Query: 627    tcggtgtagatgaagtgaagcaatgccttgaacaccacagcctccatgtcctcgatctcc 686
              ||||||||||||||||| ||||  | | |||| ||| | ||||||||||||| |||||| 
Sbjct: 155117 tcggtgtagatgaagtggagcagggtcctgaagacctctgcctccatgtccttgatctcg 155176

                                           
Query: 687    acacggtgcgagcatttctccttcatgtc 715
              |  |  ||||||  |||||||||||||||
Sbjct: 155177 atgctctgcgagtctttctccttcatgtc 155205
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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 509   gagcttgccttcgcagatgaccttgagcctgtccagcccgtatctgtc 556
             ||||||||  |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 43781 gagcttgctctcgcagatgagcttgagcctctccagcccgtacctgtc 43828



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                         
Query: 627   tcggtgtagatgaagtgaagcaatgccttgaacaccacagcctccatgtcctcgatctcc 686
             ||||||||||||||||| ||||  | | |||| ||| | ||||||||||||| |||||| 
Sbjct: 40928 tcggtgtagatgaagtggagcagggtcctgaagacctctgcctccatgtccttgatctcg 40987

                                          
Query: 687   acacggtgcgagcatttctccttcatgtc 715
             |  |  ||||||  |||||||||||||||
Sbjct: 40988 atgctctgcgagtctttctccttcatgtc 41016
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>dbj|AK108036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C07, full
           insert sequence
          Length = 1482

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 509 gagcttgccttcgcagatgaccttgagcctgtccagcccgtatctgtc 556
           ||||||||  |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 950 gagcttgctctcgcagatgagcttgagcctctccagcccgtacctgtc 903
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>ref|NM_196588.1| Oryza sativa (japonica cultivar-group) putative speckle-type
           protein (OSJNBa0072A12.28), mRNA
          Length = 855

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 627 tcggtgtagatgaagtgaagcaatgccttgaacaccacagcctccatgtcctcgat 682
           |||||||| |||||| | ||||| ||||||||||||   ||||||||||| |||||
Sbjct: 518 tcggtgtacatgaagcggagcaacgccttgaacacctgcgcctccatgtcgtcgat 463
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>gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0072A12,
              complete sequence
          Length = 149347

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 627    tcggtgtagatgaagtgaagcaatgccttgaacaccacagcctccatgtcctcgat 682
              |||||||| |||||| | ||||| ||||||||||||   ||||||||||| |||||
Sbjct: 131011 tcggtgtacatgaagcggagcaacgccttgaacacctgcgcctccatgtcgtcgat 130956



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 627    tcggtgtagatgaagtgaagcaatgccttgaacacc 662
              |||||||| | |||||| ||||| ||||||||||||
Sbjct: 125403 tcggtgtacacgaagtggagcaacgccttgaacacc 125438
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 627      tcggtgtagatgaagtgaagcaatgccttgaacaccacagcctccatgtcctcgat 682
                |||||||| |||||| | ||||| ||||||||||||   ||||||||||| |||||
Sbjct: 14658549 tcggtgtacatgaagcggagcaacgccttgaacacctgcgcctccatgtcgtcgat 14658494



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 630      gtgtagatgaagtgaagcaatgccttgaacac 661
                ||||||||||||| |||||  |||||||||||
Sbjct: 14949384 gtgtagatgaagtcaagcagagccttgaacac 14949353



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 651      gccttgaacaccacagcctccatgtcctcgat 682
                ||||||||||||  |||||||||||| |||||
Sbjct: 14758214 gccttgaacacctgagcctccatgtcgtcgat 14758183



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 627      tcggtgtagatgaagtgaagcaatgccttgaacacc 662
                |||||||| | |||||| ||||| ||||||||||||
Sbjct: 14652941 tcggtgtacacgaagtggagcaacgccttgaacacc 14652976
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 627      tcggtgtagatgaagtgaagcaatgccttgaacaccacagcctccatgtcctcgat 682
                |||||||| |||||| | ||||| ||||||||||||   ||||||||||| |||||
Sbjct: 14666790 tcggtgtacatgaagcggagcaacgccttgaacacctgcgcctccatgtcgtcgat 14666735



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 630      gtgtagatgaagtgaagcaatgccttgaacac 661
                ||||||||||||| |||||  |||||||||||
Sbjct: 14957625 gtgtagatgaagtcaagcagagccttgaacac 14957594



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 651      gccttgaacaccacagcctccatgtcctcgat 682
                ||||||||||||  |||||||||||| |||||
Sbjct: 14766455 gccttgaacacctgagcctccatgtcgtcgat 14766424



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 627      tcggtgtagatgaagtgaagcaatgccttgaacacc 662
                |||||||| | |||||| ||||| ||||||||||||
Sbjct: 14661182 tcggtgtacacgaagtggagcaacgccttgaacacc 14661217
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>gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725 orthologous region
          Length = 108553

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 627   tcggtgtagatgaagtgaagcaatgccttgaacac 661
             ||||||||||||||||| ||||  |||||||||||
Sbjct: 90688 tcggtgtagatgaagtggagcagggccttgaacac 90654



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 627   tcggtgtagatgaagtgaagcaatgccttgaacac 661
             |||||||||||||| || ||||| |||||||||||
Sbjct: 53959 tcggtgtagatgaaatggagcaaagccttgaacac 53993
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>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence
          Length = 154814

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 697   agcatttctccttcatgtctcca 719
             |||||||||||||||||||||||
Sbjct: 61203 agcatttctccttcatgtctcca 61181
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>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0064H09, complete sequence
          Length = 146742

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 623  ggtatcggtgtagatgaagtgaagca 648
            |||||||||||||||||| |||||||
Sbjct: 6282 ggtatcggtgtagatgaactgaagca 6307
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>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0082P17, complete sequence
          Length = 157539

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 623    ggtatcggtgtagatgaagtgaagca 648
              |||||||||||||||||| |||||||
Sbjct: 113900 ggtatcggtgtagatgaactgaagca 113925
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>emb|CR774195.4| Zebrafish DNA sequence from clone DKEY-73P2 in linkage group 3,
             complete sequence
          Length = 161050

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   cactgaaagcagcaagttgcac 122
             ||||||||||||||||||||||
Sbjct: 87401 cactgaaagcagcaagttgcac 87422
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>emb|CR352244.8| Zebrafish DNA sequence from clone CH211-131E11 in linkage group 2,
             complete sequence
          Length = 160001

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 101   cactgaaagcagcaagttgcac 122
             ||||||||||||||||||||||
Sbjct: 30141 cactgaaagcagcaagttgcac 30120
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 623      ggtatcggtgtagatgaagtgaagca 648
                |||||||||||||||||| |||||||
Sbjct: 26703824 ggtatcggtgtagatgaactgaagca 26703849



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 627      tcggtgtagatgaagtgaagcaatgccttgaac 659
                ||||||||||||||||| ||||  |||||||||
Sbjct: 23307380 tcggtgtagatgaagtggagcatggccttgaac 23307348
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>emb|BX855590.3| Zebrafish DNA sequence from clone CH211-245N8, complete sequence
          Length = 179373

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 101    cactgaaagcagcaagttgcac 122
              ||||||||||||||||||||||
Sbjct: 135207 cactgaaagcagcaagttgcac 135186
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 623      ggtatcggtgtagatgaagtgaagca 648
                |||||||||||||||||| |||||||
Sbjct: 27028887 ggtatcggtgtagatgaactgaagca 27028912



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 627      tcggtgtagatgaagtgaagcaatgccttgaac 659
                ||||||||||||||||| ||||  |||||||||
Sbjct: 23617290 tcggtgtagatgaagtggagcatggccttgaac 23617258
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>emb|AL359846.11| Human DNA sequence from clone RP11-413C10 on chromosome 9q31.1-31.3
              Contains three novel olfactory (seven transmembrane helix)
              receptor genes, an olfactory receptor, family 1, subfamily
              A, member 1 (OR17-1) (OR1A1) pseudogene, a novel olfactory
              (seven transmembrane helix receptor pseudogene, a novel
              gene (DKFZp564D177), a novel gene (FLJ11275), the 3' end of
              the ABCA1 gene for ATP-binding cassette, sub-family A
              (ABC1), member 1 (TGD, CERP, HDLDT1) and two CpG islands,
              complete sequence
          Length = 182012

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    tccaggggnaacacaagcacaacc 154
              |||||||| |||||||||||||||
Sbjct: 160591 tccaggggcaacacaagcacaacc 160614
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>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034K24, complete sequence
          Length = 142852

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 627   tcggtgtagatgaagtgaagcaatgccttgaac 659
             ||||||||||||||||| ||||  |||||||||
Sbjct: 79595 tcggtgtagatgaagtggagcatggccttgaac 79627
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>gb|DQ241376.1| Fundulus heteroclitus estrogen receptor-related receptor alpha
            (ERRalpha) mRNA, complete cds
          Length = 1617

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 662  cacagcctccatgtcctcgat 682
            |||||||||||||||||||||
Sbjct: 1211 cacagcctccatgtcctcgat 1191
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>gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-family A member 1 (ABCA1) and
              SNAP protein genes, complete cds
          Length = 201144

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    tccaggggnaacacaagcacaacc 154
              |||||||| |||||||||||||||
Sbjct: 199907 tccaggggcaacacaagcacaacc 199884
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>gb|AC127070.10| Homo sapiens 12 BAC RP11-46H11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181012

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   cacaaccagacactaacctcc 168
             |||||||||||||||||||||
Sbjct: 88368 cacaaccagacactaacctcc 88348
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>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBb0065C04
          Length = 165270

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 668  ctccatgtcctcgatctccac 688
            |||||||||||||||||||||
Sbjct: 3057 ctccatgtcctcgatctccac 3037
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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0051O02
          Length = 169532

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 668    ctccatgtcctcgatctccac 688
              |||||||||||||||||||||
Sbjct: 133922 ctccatgtcctcgatctccac 133902
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>dbj|AB081121.2| Phanerochaete chrysosporium mRNA for beta-glucosidase, partial cds
          Length = 2409

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 339  gaagggcagcttgccgccagg 359
            |||||||||||||||||||||
Sbjct: 1848 gaagggcagcttgccgccagg 1828
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>dbj|AK107437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B01, full
           insert sequence
          Length = 1358

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 627 tcggtgtagatgaagtgaagcaatgccttgaac 659
           ||||||||||||||||| ||||  |||||||||
Sbjct: 840 tcggtgtagatgaagtggagcatggccttgaac 808
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>dbj|AK068205.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148O09, full
           insert sequence
          Length = 535

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 668 ctccatgtcctcgatctccac 688
           |||||||||||||||||||||
Sbjct: 138 ctccatgtcctcgatctccac 118
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>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence
          Length = 77605

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 627   tcggtgtagatgaagtgaagcaatgccttgaac 659
             ||||||||||||||||| ||||  |||||||||
Sbjct: 72507 tcggtgtagatgaagtggagcatggccttgaac 72539
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>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete
             sequence
          Length = 70311

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 627   tcggtgtagatgaagtgaagcaatgccttgaac 659
             ||||||||||||||||| ||||  |||||||||
Sbjct: 65202 tcggtgtagatgaagtggagcatggccttgaac 65234
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>gb|AF036873.1|AF036873 Phanerochaete chrysosporium cellulose-binding beta-glucosidase (cbgl)
            mRNA, cbgl-1 allele, complete cds
          Length = 2591

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 339  gaagggcagcttgccgccagg 359
            |||||||||||||||||||||
Sbjct: 1915 gaagggcagcttgccgccagg 1895
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>emb|CT030637.9| Mouse DNA sequence from clone RP23-123H11 on chromosome 14, complete
             sequence
          Length = 239552

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   catcactgaattctttcagac 264
             |||||||||||||||||||||
Sbjct: 13819 catcactgaattctttcagac 13839
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>ref|NM_196586.1| Oryza sativa (japonica cultivar-group) putative speckle-type
           protein (OSJNBa0072A12.26), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 627 tcggtgtagatgaagtgaagcaatgccttgaacacc 662
           |||||||| | |||||| ||||| ||||||||||||
Sbjct: 776 tcggtgtacacgaagtggagcaacgccttgaacacc 741
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>ref|NM_196641.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0012D19.2), mRNA
          Length = 1845

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 630 gtgtagatgaagtgaagcaatgccttgaacac 661
           ||||||||||||| |||||  |||||||||||
Sbjct: 749 gtgtagatgaagtcaagcagagccttgaacac 718
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>ref|NM_196615.1| Oryza sativa (japonica cultivar-group) putative speckle-type
           protein (OSJNBa0073D04.27), mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 651 gccttgaacaccacagcctccatgtcctcgat 682
           ||||||||||||  |||||||||||| |||||
Sbjct: 632 gccttgaacacctgagcctccatgtcgtcgat 601
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>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            nbxb0012D19, complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 630  gtgtagatgaagtgaagcaatgccttgaacac 661
            ||||||||||||| |||||  |||||||||||
Sbjct: 8003 gtgtagatgaagtcaagcagagccttgaacac 7972
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 660     accacagcctccatgtcctcgatc 683
               ||||||||||| ||||||||||||
Sbjct: 1044650 accacagcctcgatgtcctcgatc 1044627
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>gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, complete sequence
          Length = 239361

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 656    gaacaccacagcctccatgt 675
              ||||||||||||||||||||
Sbjct: 201334 gaacaccacagcctccatgt 201315
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 451    cgtgctgctcggcaagagccagag 474
              |||||||| |||||||||||||||
Sbjct: 838811 cgtgctgcgcggcaagagccagag 838788
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>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence
          Length = 260989

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 656   gaacaccacagcctccatgt 675
             ||||||||||||||||||||
Sbjct: 29778 gaacaccacagcctccatgt 29759
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>emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 in linkage group 20
             Contains the gene for a novel protein similar to
             vertebrate fibronectin type III domain containing 1
             (FNDC1), the 5' end of the gene for a novel protein
             similar to vertebrate otoferlin (OTOF), a novel gene and
             two CpG islands, complete sequence
          Length = 163523

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   gctcgatttgagcaggtcag 330
             ||||||||||||||||||||
Sbjct: 35525 gctcgatttgagcaggtcag 35506
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>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04,
             complete sequence
          Length = 155372

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 651   gccttgaacaccacagcctccatgtcctcgat 682
             ||||||||||||  |||||||||||| |||||
Sbjct: 83363 gccttgaacacctgagcctccatgtcgtcgat 83332
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>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20,
              complete sequence
          Length = 139421

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 630    gtgtagatgaagtgaagcaatgccttgaacac 661
              ||||||||||||| |||||  |||||||||||
Sbjct: 129162 gtgtagatgaagtcaagcagagccttgaacac 129131
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>gb|AF218774.1|AF218774 Lycopersicon esculentum putative water channel protein (Aqp2) mRNA,
           complete cds
          Length = 937

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 644 aagcaatgccttgaacacca 663
           ||||||||||||||||||||
Sbjct: 329 aagcaatgccttgaacacca 310
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>gb|AC161247.2| Mus musculus BAC clone RP24-447J22 from chromosome 12, complete
             sequence
          Length = 159391

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 631   tgtagatgaagtgaagcaatgcct 654
             |||||||||||||||| |||||||
Sbjct: 81804 tgtagatgaagtgaagaaatgcct 81781


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,942,347
Number of Sequences: 3902068
Number of extensions: 4942347
Number of successful extensions: 96578
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96188
Number of HSP's gapped (non-prelim): 387
length of query: 719
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 696
effective length of database: 17,143,297,704
effective search space: 11931735201984
effective search space used: 11931735201984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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