>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 405 SHLHLVHHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSS 545
           SH H  HH   +HH  H Q H HQQ Q  +T  +  H  L   G S+
Sbjct: 300 SHHHQPHHHHHHHHH-HHQHHNHQQQQQQQTSLSQGHASLTVAGGSA 345

>GSH2_MOUSE (P31316) Homeobox protein GSH-2|
          Length = 305

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3

Query: 405 SHLHLVHHPQQYHHTPHRQ*HGHQQFQPGRTLA 503
           SH H  HHP Q+HH      H HQ  QPG   A
Sbjct: 123 SHAHHHHHPPQHHH------HHHQPQQPGSAAA 149

>GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2|
          Length = 304

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 405 SHLHLVHHPQQYHHTPHRQ*HGHQQFQPGRTLA 503
           +H H  HHP Q+HH      H HQ  QPG   A
Sbjct: 123 NHAHHHHHPPQHHH------HHHQPQQPGSAAA 149

>MYSH_ACACA (P47808) High molecular weight form of myosin-1 (High molecular|
            weight form of myosin I) (HMWMI)
          Length = 1577

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 585  ADDTEGTSKAAD---SKRTGPSESADGASQLQEFSQAETVDAHATAGEEYGDIVVDGEQG 415
            ADDTEG  +A       R  P + A  A   ++ + A    A ATA  +YG      +QG
Sbjct: 1431 ADDTEGVIRAGSRPAQARAQPGQQAQPAGAARQQAAAPVQAAAATASYDYGQQQQQQQQG 1490

Query: 414  ED 409
             D
Sbjct: 1491 YD 1492

>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 408 HLHLVHHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHH 518
           H H  HH   +HH PH   H H           G HH
Sbjct: 200 HHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHH 236



 Score = 31.2 bits (69), Expect = 3.2
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 408 HLHLVHHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHH 518
           H H  HH   +HH PH   H H           G HH
Sbjct: 190 HHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHH 226



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 408 HLHLVHHPQQYHHTPHRQ*HGH 473
           H H  HH   +HH PH   H H
Sbjct: 180 HHHAPHHHHHHHHAPHHHHHHH 201



 Score = 30.4 bits (67), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 408 HLHLVHHPQQYHHTPHRQ*HGH 473
           H H  HH   +HH PH   H H
Sbjct: 170 HHHAPHHHHHHHHAPHHHHHHH 191



 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 414 HLVHHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHH 518
           H  HH + +HH PH   H H    P      G HH
Sbjct: 86  HEPHHEEHHHHHPHPH-HHHHHHPPHHHHHLGHHH 119

>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)|
           (Transcription factor BF-2) (Brain factor 2) (BF2)
           (HFK2)
          Length = 469

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
 Frame = +3

Query: 402 ASH-LHLVHHPQQYHHTPHRQ*H----------GHQQFQPGRTLATGMHHQLIQRGPSSC 548
           ASH  H  HHPQ +HH  H   H            QQ QP      G   +  +RGPSSC
Sbjct: 35  ASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPRRGARRRR-RRGPSSC 93

>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 639 REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDA 469
           +EKK    +  K++ E+T +++   SKA  +  T P+ S +GA     + QA+ + A
Sbjct: 98  KEKKDKKEKKAKKSDESTTEESTSASKATTNGTTTPAASTNGA---YTYKQADALSA 151

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 423 HHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSS 545
           HH QQ HH   +Q H HQQ    +      HH  +Q+ P+S
Sbjct: 665 HHQQQQHH---QQQHQHQQQHHQQQHLHQQHHHHLQQQPNS 702

>MTPB_ARATH (Q6DBM8) Metal tolerance protein B (AtMTPb) (AtMTP4)|
          Length = 375

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 387 LMVSWASHLHLVHHPQQYHHTPHRQ*HGHQ 476
           +MV W  H H  HH   +HH  H   H HQ
Sbjct: 175 VMVLWLGHNHSHHHHDHHHH-HHNHKHQHQ 203

>ARP8_SCHPO (Q9US07) Probable actin-related protein 8|
          Length = 620

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 612 GKKQTVETTADDTEGTSKAADSKRTGPSESADG--ASQLQEFSQAETVDAH 466
           G+K   ET ++   G +K  DSK++   E  DG   S+L E    +T+  H
Sbjct: 9   GEKDAKETESESANGDTKQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLH 59

>BFR2_NEUCR (Q7S6P8) Protein bfr-2|
          Length = 636

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = -3

Query: 639 REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHAT 460
           R  +KA+    ++  E   +D E      D    G SE+       +EF+  +T D    
Sbjct: 79  RVSRKALEESDEEDFEDEEEDDEEDDDDEDDLEDGESETGS-----EEFADPDTADLERD 133

Query: 459 AGEEYGDIVVDGEQGED 409
             +E  +I  D   GED
Sbjct: 134 HIDEDAEISSDNALGED 150

>PVDA_PLAKN (P22545) Duffy receptor alpha form precursor (Erythrocyte-binding|
           protein)
          Length = 1073

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
 Frame = -3

Query: 645 PPREK---KKAVRRGKKQTVET-TADDTEGT----SKAADSKRTGPSESADGASQLQEFS 490
           PP E    + AV     +T  T T ++ EGT    +   D K  GP+ S+D  S   + S
Sbjct: 601 PPAEAAATESAVLHSADKTPNTVTEENKEGTQMDGAAGGDGKAPGPTVSSDVPSVGGKDS 660

Query: 489 QAETVDAHATAGE----EYGDIVVDGEQGEDAMP 400
              T  +HA AGE      G      E GE A P
Sbjct: 661 GPSTSASHALAGENGEVHNGTDTEPKEDGEKADP 694

>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth|
           arrest-specific homeobox)
          Length = 304

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 423 HHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSSCYQQL 560
           HH   +HH  H   H HQQ Q  + L T  H   +   PS+    L
Sbjct: 64  HHRGHHHHHHHHHHHHHQQ-QQHQALQTNWHLPQMSSPPSAARHSL 108

>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind) (L(1)omb)|
            (Protein bifid)
          Length = 972

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 402  ASHLH--LVHHPQQYHHTPHRQ*HGHQQFQPGRTLATGMH 515
            A H H    HH QQ H + H+Q H  Q  QP     T +H
Sbjct: 921  AQHHHHTQAHHQQQQHQSHHQQQHHQQPAQPHPHHQTHLH 960

>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting protein)|
          Length = 3038

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -3

Query: 633  KKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAG 454
            KK A +  K + V  +AD   G+ K +D     P +         E   + T+   +++G
Sbjct: 1735 KKLAHKHKKSREVRKSAD--AGSQKDSDDSAATPQDETVEERGRNEGLSSGTLSKSSSSG 1792

Query: 453  -EEYGDIVVDGEQGEDAMPMTP 391
             +  G+   +GE+G DA+P+ P
Sbjct: 1793 MQSCGE--EEGEEGADAVPLPP 1812

>FIBP_ADE07 (P15141) Fiber protein (pIV)|
          Length = 343

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 NYYSSSCYVVKKDHSVFPIDL 319
           NY   +CY    DH+ FPID+
Sbjct: 271 NYIYGTCYYTASDHTAFPIDI 291

>DTX_DROME (Q23985) Protein deltex|
          Length = 738

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 408 HLHLVHHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSSCYQQL 560
           H H     QQ+HH   +Q   HQQ Q  +     +HHQ   R P   + ++
Sbjct: 268 HQHQQQQQQQHHHQHQQQ--QHQQQQQHQMQHHQIHHQTAPRKPPKKHSEI 316

>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core|
           protein C)
          Length = 282

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -3

Query: 606 KQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAGEEYGDIVVD 427
           KQ V++  ++ E   +    + T   +     S  +E +  + ++    + EE GD++ D
Sbjct: 191 KQRVDSLLENLERIERDQSKQDTKLDDDQSSVSLKKEETGVKLIEETGDSAEE-GDLLDD 249

Query: 426 GEQGEDAM 403
            EQGED +
Sbjct: 250 DEQGEDTL 257

>HMH2_DROME (P10035) Homeobox protein H2.0|
          Length = 418

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 408 HLHLVHHPQQYHHTPHRQ*HGHQQFQP 488
           H H     QQ+HH  H   H HQQ +P
Sbjct: 189 HQHQKQQHQQHHHHQHHPKHLHQQHKP 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,381,660
Number of Sequences: 219361
Number of extensions: 1253263
Number of successful extensions: 4418
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4247
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)