ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1i04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for ... 60 1e-05
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
3dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
4ref|XM_467417.1| Oryza sativa (japonica cultivar-group), mRNA 58 4e-05
5gb|AY107338.1| Zea mays PCO113049 mRNA sequence 56 2e-04
6emb|CT967308.1| Human DNA sequence from clone XXyac-830B11 on ch... 44 0.61
7ref|XM_528429.1| PREDICTED: Pan troglodytes similar to G protein... 42 2.4
8ref|NM_195277.1| Oryza sativa (japonica cultivar-group) putative... 42 2.4
9gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
10ref|XM_595269.2| PREDICTED: Bos taurus similar to G protein-coup... 42 2.4
11gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, comple... 42 2.4
12gb|AC146569.5| Medicago truncatula clone mth2-102a8, complete se... 42 2.4
13gb|AF455756.1| Mus musculus tenascin-N (Tnn) mRNA, complete cds 42 2.4
14gb|AY278562.1| Homo sapiens G-protein coupled receptor GPR144 (G... 42 2.4
15gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp... 42 2.4
16gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8)... 42 2.4
17dbj|AK048033.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 2.4
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
19gb|AY255620.1| Homo sapiens G protein-coupled receptor PGR24 mRN... 42 2.4
20gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosom... 42 2.4
21ref|NM_182611.1| Homo sapiens G protein-coupled receptor 144 (GP... 42 2.4
22ref|NM_177839.2| Mus musculus tenascin N (Tnn), mRNA 42 2.4
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
24emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on ch... 42 2.4
25dbj|AB065601.1| Homo sapiens gene for seven transmembrane helix ... 42 2.4
26ref|XM_636459.1| Dictyostelium discoideum RNA binding protein (D... 40 9.6
27ref|NM_001001876.1| Gallus gallus basement membrane-specific hep... 40 9.6
28ref|XM_757515.1| Ustilago maydis 521 hypothetical protein (UM064... 40 9.6
29ref|XM_862851.1| PREDICTED: Canis familiaris similar to Rap guan... 40 9.6
30ref|XM_862846.1| PREDICTED: Canis familiaris similar to Rap guan... 40 9.6
31ref|XM_862840.1| PREDICTED: Canis familiaris similar to Rap guan... 40 9.6
32ref|XM_539787.2| PREDICTED: Canis familiaris similar to Rap guan... 40 9.6
33ref|XM_848711.1| PREDICTED: Canis familiaris similar to Rap guan... 40 9.6
34gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, com... 40 9.6
35gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, co... 40 9.6
36gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosom... 40 9.6
37emb|AL353624.8| Human DNA sequence from clone RP1-243N19 on chro... 40 9.6
38emb|AL021408.1|HS523C21 Human DNA sequence from clone RP3-523C21... 40 9.6
39gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosom... 40 9.6
40emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specifi... 40 9.6
41gb|AC091725.2| Gallus gallus clone WAG-105M15, complete sequence 40 9.6
42gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, co... 40 9.6
43gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromoso... 40 9.6
44emb|BX322588.8| Zebrafish DNA sequence from clone DKEYP-55C8 in ... 40 9.6
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
46emb|BX322607.6| Zebrafish DNA sequence from clone DKEYP-20F6 in ... 40 9.6
47gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occlu... 40 9.6
48gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, co... 40 9.6
49gb|AC130004.4| Homo sapiens 3 BAC RP11-237K2 (Roswell Park Cance... 40 9.6
50dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
51dbj|AB019231.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 9.6
52gb|AF128626.1|AF128626 Dictyostelium discoideum RNA binding prot... 40 9.6
53dbj|AK071835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
54gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, compl... 40 9.6
55emb|BX296516.3| Zebrafish DNA sequence from clone DKEY-219E20 in... 40 9.6
56gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 1... 40 9.6
57gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromos... 40 9.6
58emb|AL645483.7| Mouse DNA sequence from clone RP23-213O14 on chr... 40 9.6 
>dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein,
            complete cds, contig of clone: OsNMCP1aSE2Nco-5 and
            12FPG031
          Length = 3708

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 274  ttgttatgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 327
            |||| |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 3471 ttgtcatgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 3418



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 380  tcacttcctgatggtgtcatgggcatcgcatct 412
            |||||||||||||||||||| ||||||||||||
Sbjct: 3374 tcacttcctgatggtgtcataggcatcgcatct 3342



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                  
Query: 174  catcatcaccaaacacaccaacctagatttccaagaat 211
            |||||||||||| |||| ||||||||| ||||||||||
Sbjct: 3568 catcatcaccaagcaca-caacctagagttccaagaat 3532



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 563  gaggttccttccgtgtcatcagcggtagtttctaccgtctg 603
            ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 3176 gaggttccttctgtgtcatctgcggtagcctctactgtctg 3136



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 659  gcatttgcaactgtagtgcgtctcaaattgtagcgtttttc 699
            |||||||||||||| ||||| || |  ||||||||||||||
Sbjct: 3083 gcatttgcaactgtggtgcgcctgaggttgtagcgtttttc 3043
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 274      ttgttatgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 327
                |||| |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 29401192 ttgtcatgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 29401245



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 380      tcacttcctgatggtgtcatgggcatcgcatct 412
                |||||||||||||||||||| ||||||||||||
Sbjct: 29401289 tcacttcctgatggtgtcataggcatcgcatct 29401321



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                      
Query: 174      catcatcaccaaacacaccaacctagatttccaagaat 211
                |||||||||||| |||| ||||||||| ||||||||||
Sbjct: 29401095 catcatcaccaagcaca-caacctagagttccaagaat 29401131



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 563      gaggttccttccgtgtcatcagcggtagtttctaccgtctg 603
                ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 29401654 gaggttccttctgtgtcatctgcggtagcctctactgtctg 29401694
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>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1311_H06
          Length = 139868

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 274   ttgttatgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 327
             |||| |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 52064 ttgtcatgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 52117



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 380   tcacttcctgatggtgtcatgggcatcgcatct 412
             |||||||||||||||||||| ||||||||||||
Sbjct: 52161 tcacttcctgatggtgtcataggcatcgcatct 52193



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                   
Query: 174   catcatcaccaaacacaccaacctagatttccaagaat 211
             |||||||||||| |||| ||||||||| ||||||||||
Sbjct: 51967 catcatcaccaagcaca-caacctagagttccaagaat 52003



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 563   gaggttccttccgtgtcatcagcggtagtttctaccgtctg 603
             ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 52526 gaggttccttctgtgtcatctgcggtagcctctactgtctg 52566
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>ref|XM_467417.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3468

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 279  atgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 327
            |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 3466 atgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 3418



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 380  tcacttcctgatggtgtcatgggcatcgcatct 412
            |||||||||||||||||||| ||||||||||||
Sbjct: 3374 tcacttcctgatggtgtcataggcatcgcatct 3342



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 563  gaggttccttccgtgtcatcagcggtagtttctaccgtctg 603
            ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 3176 gaggttccttctgtgtcatctgcggtagcctctactgtctg 3136



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 659  gcatttgcaactgtagtgcgtctcaaattgtagcgtttttc 699
            |||||||||||||| ||||| || |  ||||||||||||||
Sbjct: 3083 gcatttgcaactgtggtgcgcctgaggttgtagcgtttttc 3043
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>gb|AY107338.1| Zea mays PCO113049 mRNA sequence
          Length = 866

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 463 agcatgggcatcaacagtttcagcctgggagaactcttgcaactgggatgca 514
           ||||||||||||| ||  |||| ||||||| ||||| |||||||||||||||
Sbjct: 335 agcatgggcatcaccaacttcaacctgggaaaactcatgcaactgggatgca 284
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>emb|CT967308.1| Human DNA sequence from clone XXyac-830B11 on chromosome 6, complete
            sequence
          Length = 31833

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 602  tgcttttttcctctcctcacag 623
            ||||||||||||||||||||||
Sbjct: 5089 tgcttttttcctctcctcacag 5110
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>ref|XM_528429.1| PREDICTED: Pan troglodytes similar to G protein-coupled receptor 144;
            G-protein coupled receptor GPR144 (LOC473059), mRNA
          Length = 3456

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 639  gtggaggggctgctgctgtgg 659
            |||||||||||||||||||||
Sbjct: 2857 gtggaggggctgctgctgtgg 2877
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>ref|NM_195277.1| Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein
            (OSJNBb0038H12.4), mRNA
          Length = 2283

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 651  ctgctgtggcatttgcaactg 671
            |||||||||||||||||||||
Sbjct: 2263 ctgctgtggcatttgcaactg 2243
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 651   ctgctgtggcatttgcaactg 671
             |||||||||||||||||||||
Sbjct: 14916 ctgctgtggcatttgcaactg 14896
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>ref|XM_595269.2| PREDICTED: Bos taurus similar to G protein-coupled receptor 144
           (LOC517106), mRNA
          Length = 1776

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 639 gtggaggggctgctgctgtgg 659
           |||||||||||||||||||||
Sbjct: 931 gtggaggggctgctgctgtgg 951
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>gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, complete sequence
          Length = 213229

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 642   gaggggctgctgctgtggcat 662
             |||||||||||||||||||||
Sbjct: 37188 gaggggctgctgctgtggcat 37208
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>gb|AC146569.5| Medicago truncatula clone mth2-102a8, complete sequence
          Length = 127803

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   ttcaccatccacaacaatatc 441
             |||||||||||||||||||||
Sbjct: 14004 ttcaccatccacaacaatatc 13984
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>gb|AF455756.1| Mus musculus tenascin-N (Tnn) mRNA, complete cds
          Length = 5773

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 558  ctttagaggttccttccgtgtcatc 582
            ||||||||||||||||| |||||||
Sbjct: 4931 ctttagaggttccttccatgtcatc 4955
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>gb|AY278562.1| Homo sapiens G-protein coupled receptor GPR144 (GPR144) mRNA,
            complete cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 639  gtggaggggctgctgctgtgg 659
            |||||||||||||||||||||
Sbjct: 2221 gtggaggggctgctgctgtgg 2241
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>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence
          Length = 256719

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 558   ctttagaggttccttccgtgtcatc 582
             ||||||||||||||||| |||||||
Sbjct: 80484 ctttagaggttccttccatgtcatc 80460
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>gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8) gene, complete cds;
             germline T-cell receptor beta DJC region genes, partial
             cds
          Length = 151480

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 242   aacctaatcagatgcaattat 262
             |||||||||||||||||||||
Sbjct: 66339 aacctaatcagatgcaattat 66319
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>dbj|AK048033.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130031C11 product:hypothetical Fibrinogen
            beta and gamma chains C-terminal globular domain
            containing protein, full insert sequence
          Length = 3343

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 558  ctttagaggttccttccgtgtcatc 582
            ||||||||||||||||| |||||||
Sbjct: 3080 ctttagaggttccttccatgtcatc 3104
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 651     ctgctgtggcatttgcaactg 671
               |||||||||||||||||||||
Sbjct: 5908967 ctgctgtggcatttgcaactg 5908987
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>gb|AY255620.1| Homo sapiens G protein-coupled receptor PGR24 mRNA, partial cds
          Length = 837

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 639 gtggaggggctgctgctgtgg 659
           |||||||||||||||||||||
Sbjct: 367 gtggaggggctgctgctgtgg 387
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>gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosome 6, complete sequence
          Length = 178299

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 249    tcagatgcaattattattctt 269
              |||||||||||||||||||||
Sbjct: 108114 tcagatgcaattattattctt 108094
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>ref|NM_182611.1| Homo sapiens G protein-coupled receptor 144 (GPR144), mRNA
          Length = 2892

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 639  gtggaggggctgctgctgtgg 659
            |||||||||||||||||||||
Sbjct: 2221 gtggaggggctgctgctgtgg 2241
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>ref|NM_177839.2| Mus musculus tenascin N (Tnn), mRNA
          Length = 5773

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 558  ctttagaggttccttccgtgtcatc 582
            ||||||||||||||||| |||||||
Sbjct: 4931 ctttagaggttccttccatgtcatc 4955
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 651     ctgctgtggcatttgcaactg 671
               |||||||||||||||||||||
Sbjct: 5910153 ctgctgtggcatttgcaactg 5910173
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>emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on chromosome 9, complete
              sequence
          Length = 162839

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 639    gtggaggggctgctgctgtgg 659
              |||||||||||||||||||||
Sbjct: 142765 gtggaggggctgctgctgtgg 142785
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>dbj|AB065601.1| Homo sapiens gene for seven transmembrane helix receptor, complete
            cds, isolate:CBRC7TM_164
          Length = 18512

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 639  gtggaggggctgctgctgtgg 659
            |||||||||||||||||||||
Sbjct: 3562 gtggaggggctgctgctgtgg 3582
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>ref|XM_636459.1| Dictyostelium discoideum RNA binding protein (DDB0218189), partial
           mRNA
          Length = 2360

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 atcatcaccaaacacaccaa 194
           ||||||||||||||||||||
Sbjct: 905 atcatcaccaaacacaccaa 924
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>ref|NM_001001876.1| Gallus gallus basement membrane-specific heparan sulfate proteoglycan
             core protein (HSPG), mRNA
          Length = 12255

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   gaggggctgctgctgtggca 661
             ||||||||||||||||||||
Sbjct: 11776 gaggggctgctgctgtggca 11795
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>ref|XM_757515.1| Ustilago maydis 521 hypothetical protein (UM06461.1) partial mRNA
          Length = 4149

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gctgctgctgtggcatttgc 666
           ||||||||||||||||||||
Sbjct: 736 gctgctgctgtggcatttgc 755
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>ref|XM_862851.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 5 (LOC482670), mRNA
          Length = 6850

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 615  tcctcacagctttcttcttctccc 638
            |||||||||||||||||| |||||
Sbjct: 3628 tcctcacagctttcttctcctccc 3651
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>ref|XM_862846.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 4 (LOC482670), mRNA
          Length = 7066

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 615  tcctcacagctttcttcttctccc 638
            |||||||||||||||||| |||||
Sbjct: 3847 tcctcacagctttcttctcctccc 3870
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>ref|XM_862840.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 3 (LOC482670), mRNA
          Length = 7042

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 615  tcctcacagctttcttcttctccc 638
            |||||||||||||||||| |||||
Sbjct: 3823 tcctcacagctttcttctcctccc 3846
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>ref|XM_539787.2| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 1 (LOC482670), mRNA
          Length = 7048

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 615  tcctcacagctttcttcttctccc 638
            |||||||||||||||||| |||||
Sbjct: 3835 tcctcacagctttcttctcctccc 3858
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>ref|XM_848711.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide
            exchange factor 2 (PDZ domain containing guanine
            nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF),
            transcript variant 2 (LOC482670), mRNA
          Length = 7081

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 615  tcctcacagctttcttcttctccc 638
            |||||||||||||||||| |||||
Sbjct: 3859 tcctcacagctttcttctcctccc 3882
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>gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, complete sequence
          Length = 195511

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    tattcttcctcttgttatgt 282
              ||||||||||||||||||||
Sbjct: 147313 tattcttcctcttgttatgt 147294
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>gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, complete sequence
          Length = 211926

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   gaggggctgctgctgtggca 661
             ||||||||||||||||||||
Sbjct: 56555 gaggggctgctgctgtggca 56574
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>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence
          Length = 191274

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 604   cttttttcctctcctcacag 623
             ||||||||||||||||||||
Sbjct: 49101 cttttttcctctcctcacag 49082
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>emb|AL353624.8| Human DNA sequence from clone RP1-243N19 on chromosome 6, complete
             sequence
          Length = 23424

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   atatcaccatactcctcacc 456
             ||||||||||||||||||||
Sbjct: 17751 atatcaccatactcctcacc 17732
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>emb|AL021408.1|HS523C21 Human DNA sequence from clone RP3-523C21 on chromosome 6q23.1-23.3
             Contains two novels genes, complete sequence
          Length = 146831

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   aatcagatgcaattattatt 266
             ||||||||||||||||||||
Sbjct: 60250 aatcagatgcaattattatt 60231
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>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence
          Length = 226160

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 604    cttttttcctctcctcacag 623
              ||||||||||||||||||||
Sbjct: 211074 cttttttcctctcctcacag 211055
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>emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specific heparan sulfate
             proteoglycan core protein precursor (HSPG gene)
          Length = 12255

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   gaggggctgctgctgtggca 661
             ||||||||||||||||||||
Sbjct: 11776 gaggggctgctgctgtggca 11795
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>gb|AC091725.2| Gallus gallus clone WAG-105M15, complete sequence
          Length = 98793

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ctgatggtgtcatgggcatc 406
             ||||||||||||||||||||
Sbjct: 13008 ctgatggtgtcatgggcatc 12989
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>gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, complete sequence
          Length = 188117

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   agatgcaattattattcttc 270
             ||||||||||||||||||||
Sbjct: 98067 agatgcaattattattcttc 98048
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>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete
             sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   ctgatggtgtcatgggcatc 406
             ||||||||||||||||||||
Sbjct: 16976 ctgatggtgtcatgggcatc 16995
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>emb|BX322588.8| Zebrafish DNA sequence from clone DKEYP-55C8 in linkage group 2, complete
              sequence
          Length = 192641

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    atgagtgcaagaaaaatcta 167
              ||||||||||||||||||||
Sbjct: 142089 atgagtgcaagaaaaatcta 142108
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 513      caccatcagctgattcagag 532
                ||||||||||||||||||||
Sbjct: 19319503 caccatcagctgattcagag 19319522
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>emb|BX322607.6| Zebrafish DNA sequence from clone DKEYP-20F6 in linkage group 2, complete
              sequence
          Length = 167493

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    atgagtgcaagaaaaatcta 167
              ||||||||||||||||||||
Sbjct: 133455 atgagtgcaagaaaaatcta 133474
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>gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occludens 1) (TJP1) gene,
             complete cds
          Length = 125625

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   agatgcaattattattcttc 270
             ||||||||||||||||||||
Sbjct: 81235 agatgcaattattattcttc 81254
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>gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, complete sequence
          Length = 166871

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 619    cacagctttcttcttctccc 638
              ||||||||||||||||||||
Sbjct: 102902 cacagctttcttcttctccc 102883
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>gb|AC130004.4| Homo sapiens 3 BAC RP11-237K2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 118699

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   atcatcaccaaacacaccaa 194
             ||||||||||||||||||||
Sbjct: 91707 atcatcaccaaacacaccaa 91688
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>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0438E12
          Length = 146851

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   caccatcagctgattcagag 532
             ||||||||||||||||||||
Sbjct: 24276 caccatcagctgattcagag 24295
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>dbj|AB019231.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGO3
          Length = 43570

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 600   tctgcttttttcctctcctc 619
             ||||||||||||||||||||
Sbjct: 24988 tctgcttttttcctctcctc 25007
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>gb|AF128626.1|AF128626 Dictyostelium discoideum RNA binding protein PufA (pufA) gene,
            complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  atcatcaccaaacacaccaa 194
            ||||||||||||||||||||
Sbjct: 1309 atcatcaccaaacacaccaa 1328
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>dbj|AK071835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115A04, full
            insert sequence
          Length = 1679

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 513  caccatcagctgattcagag 532
            ||||||||||||||||||||
Sbjct: 1015 caccatcagctgattcagag 1034
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>gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 472    atcaacagtttcagcctgggagaa 495
              |||||||||||||||||| |||||
Sbjct: 125548 atcaacagtttcagcctgagagaa 125525
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>emb|BX296516.3| Zebrafish DNA sequence from clone DKEY-219E20 in linkage group 20,
             complete sequence
          Length = 160555

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 618   tcacagctttcttcttctcc 637
             ||||||||||||||||||||
Sbjct: 13475 tcacagctttcttcttctcc 13494
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>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence
          Length = 207280

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 642    gaggggctgctgctgtggca 661
              ||||||||||||||||||||
Sbjct: 158786 gaggggctgctgctgtggca 158805
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>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete
              sequence
          Length = 209348

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    ctgatggtgtcatgggcatc 406
              ||||||||||||||||||||
Sbjct: 164374 ctgatggtgtcatgggcatc 164393
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>emb|AL645483.7| Mouse DNA sequence from clone RP23-213O14 on chromosome 4, complete
             sequence
          Length = 87103

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 608   tttcctctcctcacagctttcttc 631
             ||||||||||| ||||||||||||
Sbjct: 72711 tttcctctcctgacagctttcttc 72688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,519,361
Number of Sequences: 3902068
Number of extensions: 6519361
Number of successful extensions: 134639
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134316
Number of HSP's gapped (non-prelim): 323
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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