ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1h06 |
|---|---|
| Clone Library Name | barley_pub |
>TSP2_MOUSE (Q03350) Thrombospondin-2 precursor| Length = 1172 Score = 32.3 bits (72), Expect = 0.32 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -3 Query: 236 KGGXWAHWPPWSNCS 192 + G W+HW PWS+CS Sbjct: 436 QNGGWSHWSPWSSCS 450
>TSP2_HUMAN (P35442) Thrombospondin-2 precursor| Length = 1172 Score = 32.0 bits (71), Expect = 0.42 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W+HW PWS+CS Sbjct: 438 GGWSHWSPWSSCS 450
>TSP1_XENLA (P35448) Thrombospondin-1 precursor| Length = 1173 Score = 32.0 bits (71), Expect = 0.42 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W+HW PWS+CS Sbjct: 439 GGWSHWSPWSSCS 451
>TSP2_CHICK (P35440) Thrombospondin-2 precursor| Length = 1178 Score = 32.0 bits (71), Expect = 0.42 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W+HW PWS+CS Sbjct: 444 GGWSHWSPWSSCS 456
>TSP2_BOVIN (Q95116) Thrombospondin-2 precursor (Corticotropin-induced secreted| protein) (CISP) Length = 1170 Score = 32.0 bits (71), Expect = 0.42 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W+HW PWS+CS Sbjct: 436 GGWSHWSPWSSCS 448
>TSP1_MOUSE (P35441) Thrombospondin-1 precursor| Length = 1170 Score = 32.0 bits (71), Expect = 0.42 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W+HW PWS+CS Sbjct: 436 GGWSHWSPWSSCS 448
>TSP1_HUMAN (P07996) Thrombospondin-1 precursor| Length = 1170 Score = 32.0 bits (71), Expect = 0.42 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W+HW PWS+CS Sbjct: 436 GGWSHWSPWSSCS 448
>TSP1_BOVIN (Q28178) Thrombospondin-1 precursor| Length = 1170 Score = 32.0 bits (71), Expect = 0.42 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W+HW PWS+CS Sbjct: 436 GGWSHWSPWSSCS 448
>PROP_MOUSE (P11680) Properdin precursor (Factor P)| Length = 464 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 230 GXWAHWPPWSNCSDAVLSSXK 168 G WA W PWS CS + L + Sbjct: 190 GAWASWGPWSPCSGSCLGGAQ 210
>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)| Length = 1093 Score = 29.3 bits (64), Expect = 2.7 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -3 Query: 257 VHVAGT*KGGXWAHWPPWSNCS 192 +H+A + G W W W+ CS Sbjct: 598 IHIANCSRNGAWTAWSSWAQCS 619 Score = 28.9 bits (63), Expect = 3.6 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G WA W PWS+CS Sbjct: 796 GGWATWGPWSSCS 808
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 28.9 bits (63), Expect = 3.6 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G WA W PWS+CS Sbjct: 796 GGWAAWGPWSSCS 808 Score = 28.1 bits (61), Expect = 6.1 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -3 Query: 257 VHVAGT*KGGXWAHWPPWSNCS 192 +H+A + G W W W+ CS Sbjct: 598 IHIANCSRNGAWTPWSSWALCS 619
>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12) Length = 1593 Score = 28.5 bits (62), Expect = 4.6 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W W PWS+CS Sbjct: 543 GGWGRWSPWSHCS 555
>ATS12_MOUSE (Q811B3) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12) Length = 1600 Score = 28.5 bits (62), Expect = 4.6 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 Query: 230 GXWAHWPPWSNCS 192 G W W PWS+CS Sbjct: 547 GGWGRWSPWSHCS 559
>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)| Length = 5635 Score = 27.7 bits (60), Expect = 7.9 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -3 Query: 230 GXWAHWPPWSNCSDA 186 G W+ W PW CS++ Sbjct: 4644 GAWSAWQPWGTCSES 4658 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,821,520 Number of Sequences: 219361 Number of extensions: 406323 Number of successful extensions: 827 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 827 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
