| Clone Name | rbags1h06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185068 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Plus Query: 100 attgaggcattcttcttcatcaaatc 125 |||| ||||||||||||||||||||| Sbjct: 42602 attggggcattcttcttcatcaaatc 42627
>gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complete sequence Length = 185915 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 ctctctccaaagccgaaacaggcat 49 ||||||||||||| ||||||||||| Sbjct: 128875 ctctctccaaagctgaaacaggcat 128899
>gb|AC150556.1| Drosophila melanogaster clone BACR07H20, complete sequence Length = 183020 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 ctctctccaaagccgaaacaggcat 49 ||||||||||||| ||||||||||| Sbjct: 137778 ctctctccaaagctgaaacaggcat 137754
>gb|AC013247.8| Drosophila melanogaster, chromosome 2R, region 41D-41E, BAC clone BACR06P07, complete sequence Length = 187793 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 ctctctccaaagccgaaacaggcat 49 ||||||||||||| ||||||||||| Sbjct: 29734 ctctctccaaagctgaaacaggcat 29758
>gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, complete sequence Length = 223552 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 agagaaactcactaagaatct 91 ||||||||||||||||||||| Sbjct: 68179 agagaaactcactaagaatct 68199
>gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 of 73 of the complete sequence Length = 294609 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 ctctctccaaagccgaaacaggcat 49 ||||||||||||| ||||||||||| Sbjct: 191225 ctctctccaaagctgaaacaggcat 191201
>ref|NM_126247.2| Arabidopsis thaliana unknown protein AT2G01860 mRNA, complete cds Length = 2195 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaaactcactaagaatctc 92 |||||||||||||||||||| Sbjct: 344 agaaactcactaagaatctc 363
>gb|BT020200.1| Arabidopsis thaliana At2g01860 mRNA, complete cds Length = 1461 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaaactcactaagaatctc 92 |||||||||||||||||||| Sbjct: 116 agaaactcactaagaatctc 135
>gb|BT015882.1| Arabidopsis thaliana At2g01860 gene, complete cds Length = 1757 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaaactcactaagaatctc 92 |||||||||||||||||||| Sbjct: 334 agaaactcactaagaatctc 353
>gb|U00065.1| Caenorhabditis elegans cosmid D1044, complete sequence Length = 40301 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcttcttcatcaaatctgtg 129 |||||||||||||||||||| Sbjct: 2985 tcttcttcatcaaatctgtg 2966
>emb|AL109654.22|HSG278N14 Human DNA sequence from clone GS1-278N14 on chromosome Xq27.3-28, complete sequence Length = 182150 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcttcttcatcaaatctgtg 129 |||||||||||||||||||| Sbjct: 161028 tcttcttcatcaaatctgtg 161009
>emb|BX005275.25| Zebrafish DNA sequence from clone DKEY-118J18 in linkage group 24, complete sequence Length = 174489 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cttcatcaaatctgtgagag 133 |||||||||||||||||||| Sbjct: 117734 cttcatcaaatctgtgagag 117715
>emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in linkage group 18, complete sequence Length = 121656 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 catgtgctttagtgtttagt 22 |||||||||||||||||||| Sbjct: 67627 catgtgctttagtgtttagt 67608
>gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map mi320, complete sequence Length = 73009 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaaactcactaagaatctc 92 |||||||||||||||||||| Sbjct: 34543 agaaactcactaagaatctc 34562
>gb|AC111017.23| Mus musculus chromosome 13, clone RP23-62F4, complete sequence Length = 239344 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 tcactaagaatctcattaaggatt 102 ||||||| |||||||||||||||| Sbjct: 236351 tcactaacaatctcattaaggatt 236328
>ref|NM_171123.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-25) (pqn-25) mRNA, complete cds Length = 2071 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tcttcttcatcaaatctgtg 129 |||||||||||||||||||| Sbjct: 1852 tcttcttcatcaaatctgtg 1871
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gtttagtccctctctccaaa 35 |||||||||||||||||||| Sbjct: 30731081 gtttagtccctctctccaaa 30731100
>emb|BX819470.1|CNS0A8Z5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB80ZC07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1690 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaaactcactaagaatctc 92 |||||||||||||||||||| Sbjct: 319 agaaactcactaagaatctc 338
>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09 Length = 127973 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gtttagtccctctctccaaa 35 |||||||||||||||||||| Sbjct: 20356 gtttagtccctctctccaaa 20375
>gb|AC093570.30| Mus musculus strain C57BL/6J chromosome 5 clone rp23-115a12, complete sequence Length = 203838 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tgaggcattcttcttcatca 121 |||||||||||||||||||| Sbjct: 73840 tgaggcattcttcttcatca 73821
>emb|BX323070.7| Zebrafish DNA sequence from clone DKEY-45H7 in linkage group 18, complete sequence Length = 103856 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 catgtgctttagtgtttagt 22 |||||||||||||||||||| Sbjct: 47652 catgtgctttagtgtttagt 47633
>emb|CT574570.2| Pan troglodytes chromosome X clone CH251-19I14 map Xq28, complete sequence Length = 173906 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcttcttcatcaaatctgtg 129 |||||||||||||||||||| Sbjct: 15082 tcttcttcatcaaatctgtg 15063
>gb|U00055.2| Caenorhabditis elegans cosmid R02F2, complete sequence Length = 33087 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcttcttcatcaaatctgtg 129 |||||||||||||||||||| Sbjct: 31072 tcttcttcatcaaatctgtg 31053
>gb|AC118222.8| Mus musculus chromosome 13, clone RP23-277M5, complete sequence Length = 175089 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 tcactaagaatctcattaaggatt 102 ||||||| |||||||||||||||| Sbjct: 170716 tcactaacaatctcattaaggatt 170739 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,671,162 Number of Sequences: 3902068 Number of extensions: 1671162 Number of successful extensions: 29587 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29554 Number of HSP's gapped (non-prelim): 33 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)