ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Canc... 44 0.23
2gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complet... 42 0.92
3gb|AC150556.1| Drosophila melanogaster clone BACR07H20, complete... 42 0.92
4gb|AC013247.8| Drosophila melanogaster, chromosome 2R, region 41... 42 0.92
5gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, c... 42 0.92
6gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 ... 42 0.92
7ref|NM_126247.2| Arabidopsis thaliana unknown protein AT2G01860 ... 40 3.7
8gb|BT020200.1| Arabidopsis thaliana At2g01860 mRNA, complete cds 40 3.7
9gb|BT015882.1| Arabidopsis thaliana At2g01860 gene, complete cds 40 3.7
10gb|U00065.1| Caenorhabditis elegans cosmid D1044, complete sequence 40 3.7
11emb|AL109654.22|HSG278N14 Human DNA sequence from clone GS1-278N... 40 3.7
12emb|BX005275.25| Zebrafish DNA sequence from clone DKEY-118J18 i... 40 3.7
13emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in ... 40 3.7
14gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map... 40 3.7
15gb|AC111017.23| Mus musculus chromosome 13, clone RP23-62F4, com... 40 3.7
16ref|NM_171123.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-do... 40 3.7
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
18emb|BX819470.1|CNS0A8Z5 Arabidopsis thaliana Full-length cDNA Co... 40 3.7
19dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
20gb|AC093570.30| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 3.7
21emb|BX323070.7| Zebrafish DNA sequence from clone DKEY-45H7 in l... 40 3.7
22emb|CT574570.2| Pan troglodytes chromosome X clone CH251-19I14 m... 40 3.7
23gb|U00055.2| Caenorhabditis elegans cosmid R02F2, complete sequence 40 3.7
24gb|AC118222.8| Mus musculus chromosome 13, clone RP23-277M5, com... 40 3.7

>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 185068

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 100   attgaggcattcttcttcatcaaatc 125
             |||| |||||||||||||||||||||
Sbjct: 42602 attggggcattcttcttcatcaaatc 42627



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>gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complete sequence
          Length = 185915

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 25     ctctctccaaagccgaaacaggcat 49
              ||||||||||||| |||||||||||
Sbjct: 128875 ctctctccaaagctgaaacaggcat 128899



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>gb|AC150556.1| Drosophila melanogaster clone BACR07H20, complete sequence
          Length = 183020

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 25     ctctctccaaagccgaaacaggcat 49
              ||||||||||||| |||||||||||
Sbjct: 137778 ctctctccaaagctgaaacaggcat 137754



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>gb|AC013247.8| Drosophila melanogaster, chromosome 2R, region 41D-41E, BAC clone
             BACR06P07, complete sequence
          Length = 187793

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 25    ctctctccaaagccgaaacaggcat 49
             ||||||||||||| |||||||||||
Sbjct: 29734 ctctctccaaagctgaaacaggcat 29758



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>gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, complete sequence
          Length = 223552

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    agagaaactcactaagaatct 91
             |||||||||||||||||||||
Sbjct: 68179 agagaaactcactaagaatct 68199



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>gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 of 73 of the complete
              sequence
          Length = 294609

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 25     ctctctccaaagccgaaacaggcat 49
              ||||||||||||| |||||||||||
Sbjct: 191225 ctctctccaaagctgaaacaggcat 191201



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>ref|NM_126247.2| Arabidopsis thaliana unknown protein AT2G01860 mRNA, complete cds
          Length = 2195

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  agaaactcactaagaatctc 92
           ||||||||||||||||||||
Sbjct: 344 agaaactcactaagaatctc 363



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>gb|BT020200.1| Arabidopsis thaliana At2g01860 mRNA, complete cds
          Length = 1461

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  agaaactcactaagaatctc 92
           ||||||||||||||||||||
Sbjct: 116 agaaactcactaagaatctc 135



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>gb|BT015882.1| Arabidopsis thaliana At2g01860 gene, complete cds
          Length = 1757

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  agaaactcactaagaatctc 92
           ||||||||||||||||||||
Sbjct: 334 agaaactcactaagaatctc 353



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>gb|U00065.1| Caenorhabditis elegans cosmid D1044, complete sequence
          Length = 40301

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  tcttcttcatcaaatctgtg 129
            ||||||||||||||||||||
Sbjct: 2985 tcttcttcatcaaatctgtg 2966



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>emb|AL109654.22|HSG278N14 Human DNA sequence from clone GS1-278N14 on chromosome Xq27.3-28,
              complete sequence
          Length = 182150

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tcttcttcatcaaatctgtg 129
              ||||||||||||||||||||
Sbjct: 161028 tcttcttcatcaaatctgtg 161009



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>emb|BX005275.25| Zebrafish DNA sequence from clone DKEY-118J18 in linkage group 24,
              complete sequence
          Length = 174489

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    cttcatcaaatctgtgagag 133
              ||||||||||||||||||||
Sbjct: 117734 cttcatcaaatctgtgagag 117715



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>emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in linkage group 18,
             complete sequence
          Length = 121656

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     catgtgctttagtgtttagt 22
             ||||||||||||||||||||
Sbjct: 67627 catgtgctttagtgtttagt 67608



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>gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map mi320, complete
             sequence
          Length = 73009

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    agaaactcactaagaatctc 92
             ||||||||||||||||||||
Sbjct: 34543 agaaactcactaagaatctc 34562



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>gb|AC111017.23| Mus musculus chromosome 13, clone RP23-62F4, complete sequence
          Length = 239344

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     tcactaagaatctcattaaggatt 102
              ||||||| ||||||||||||||||
Sbjct: 236351 tcactaacaatctcattaaggatt 236328



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>ref|NM_171123.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein
            family member (pqn-25) (pqn-25) mRNA, complete cds
          Length = 2071

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  tcttcttcatcaaatctgtg 129
            ||||||||||||||||||||
Sbjct: 1852 tcttcttcatcaaatctgtg 1871



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 16       gtttagtccctctctccaaa 35
                ||||||||||||||||||||
Sbjct: 30731081 gtttagtccctctctccaaa 30731100



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>emb|BX819470.1|CNS0A8Z5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB80ZC07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1690

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  agaaactcactaagaatctc 92
           ||||||||||||||||||||
Sbjct: 319 agaaactcactaagaatctc 338



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>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0021A09
          Length = 127973

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    gtttagtccctctctccaaa 35
             ||||||||||||||||||||
Sbjct: 20356 gtttagtccctctctccaaa 20375



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>gb|AC093570.30| Mus musculus strain C57BL/6J chromosome 5 clone rp23-115a12, complete
             sequence
          Length = 203838

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tgaggcattcttcttcatca 121
             ||||||||||||||||||||
Sbjct: 73840 tgaggcattcttcttcatca 73821



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>emb|BX323070.7| Zebrafish DNA sequence from clone DKEY-45H7 in linkage group 18,
             complete sequence
          Length = 103856

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     catgtgctttagtgtttagt 22
             ||||||||||||||||||||
Sbjct: 47652 catgtgctttagtgtttagt 47633



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>emb|CT574570.2| Pan troglodytes chromosome X clone CH251-19I14 map Xq28, complete
             sequence
          Length = 173906

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tcttcttcatcaaatctgtg 129
             ||||||||||||||||||||
Sbjct: 15082 tcttcttcatcaaatctgtg 15063



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>gb|U00055.2| Caenorhabditis elegans cosmid R02F2, complete sequence
          Length = 33087

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tcttcttcatcaaatctgtg 129
             ||||||||||||||||||||
Sbjct: 31072 tcttcttcatcaaatctgtg 31053



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>gb|AC118222.8| Mus musculus chromosome 13, clone RP23-277M5, complete sequence
          Length = 175089

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     tcactaagaatctcattaaggatt 102
              ||||||| ||||||||||||||||
Sbjct: 170716 tcactaacaatctcattaaggatt 170739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,671,162
Number of Sequences: 3902068
Number of extensions: 1671162
Number of successful extensions: 29587
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29554
Number of HSP's gapped (non-prelim): 33
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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