ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF182197.1|AF182197 Hordeum vulgare RNase S-like protein prec... 113 7e-23

>gb|AF182197.1|AF182197 Hordeum vulgare RNase S-like protein precursor (rsh1) gene, complete
            cds
          Length = 3758

 Score =  113 bits (57), Expect = 7e-23
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                        
Query: 1    aattattcattggaacgcaacccacaagacgaggcctgntcggntaccaatctgnngntg 60
            |||||||||||||||||||||||||||||||||||||| |||| ||||||||||  | ||
Sbjct: 3246 aattattcattggaacgcaacccacaagacgaggcctgatcggctaccaatctgcagctg 3187

                              
Query: 61   tngctcagtntcccatgg 78
            | ||||||| ||||||||
Sbjct: 3186 tagctcagtatcccatgg 3169


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,620
Number of Sequences: 3902068
Number of extensions: 187620
Number of successful extensions: 6982
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6981
Number of HSP's gapped (non-prelim): 1
length of query: 78
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 57
effective length of database: 17,151,101,840
effective search space: 977612804880
effective search space used: 977612804880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top