>PICA_DROME (Q9VI75) Phosphatidylinositol-binding clathrin assembly protein LAP|
           (Like-AP180)
          Length = 468

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 263 IVSLLYMYFKRNRYHAHSALDA----LVSSDHLRTFLTSSTNCALLEGSI 400
           I++LL  YF  N+ HA  ALD     LV  D +  FL  + N  + +G I
Sbjct: 229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDI 278

>RBGPR_HUMAN (Q9H2M9) Rab3 GTPase-activating protein non-catalytic subunit (Rab3|
           GTPase-activating protein 150 kDa subunit) (Rab3-GAP
           p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150)
           (RGAP-iso)
          Length = 1393

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = -1

Query: 576 STEWDDDDAFVAWREN-PENYQEYIKELRAQRVSQLLSDVADSSP--DLQ--ALPQGLSM 412
           ST+W+D D + AW EN P+  +E     + Q+ S L   V   SP  DL   A  Q    
Sbjct: 41  STDWED-DGWGAWEENEPQEPEEEGNTCKTQKTSWLQDCVLSLSPTNDLMVIAREQKAVF 99

Query: 411 LLEKMDPSRRAQFVEEVKKVLK*SDDTNASNAEC 310
           L+ K   S + +  EE++  +  S   N    EC
Sbjct: 100 LVPKWKYSDKGK--EEMQFAVGWSGSLNVEEGEC 131

>EFG_PSYAR (Q4FQG5) Elongation factor G (EF-G)|
          Length = 708

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -1

Query: 654 GKQFSHQSAIELIQKWYLASKEAETGSTEWDDDDAFVAWRENPENYQEYIKELRAQRVSQ 475
           GK+   +  ++LI    +   EA  G  E+D+ +     +E  E Y+EY+ E  A+   +
Sbjct: 174 GKEDDFEGVVDLITMKAIYWDEASQGM-EYDEREIPAELQEKAEEYREYLVENAAEATEE 232

Query: 474 LLSDVADS 451
           L+++  ++
Sbjct: 233 LMNEYLEN 240

>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1774

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 181  SSNNGRRLQTSFTKQWLTQISYGRLQPNSIPSIYVLQEKPISC--TFCIGCV 330
            S  +GRRL  S+ + W T+ +    Q +S+ S  +L++K  SC  ++ + C+
Sbjct: 1713 SDPSGRRLMESYCETWRTETTGATGQASSLLSGRLLEQKAASCHNSYIVLCI 1764

>CDR2_CANAL (P78595) Multidrug resistance protein CDR2|
          Length = 1499

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 442 IWTGVCNI*EQLRYPLSPEFFDILLVVFRVFPPGNKSIIIIPFGASCFSLLRS 600
           +W        +L+ P   ++FDIL  +  +  PG  ++++   GA C +LL++
Sbjct: 145 LWKFTTEAINKLKKPDDSKYFDILKSMDAIMRPGELTVVLGRPGAGCSTLLKT 197

>PPID_SCHPO (Q11004) 40 kDa peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-40) (CYP-40)
          Length = 356

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 681 LAKEIRGVSGKQFSHQSAIELIQKWYLASKEAETGSTEWDDDDAFVAWRENPENYQEY 508
           +A +++G++ KQF+ Q+    + KW  A +         DD       +E+P+ ++EY
Sbjct: 203 IASDLKGIANKQFAQQNLDTAVAKWQKALRYLMEYPVPNDDS------KESPDFWKEY 254

>UBR1_HUMAN (Q8IWV7) Ubiquitin-protein ligase E3 component N-recognin-1 (EC|
           6.-.-.-) (Ubiquitin-protein ligase E3-alpha-1)
           (Ubiquitin-protein ligase E3-alpha-I)
          Length = 1749

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +2

Query: 290 KRNRYHAHSALDALVSSDHLRTFLTSSTNCALLEGSIFSSSIERPCGKACRSGLESATSE 469
           K  RY+     D   S DH+   L  + +C L E  + +++I++   +A ++G  +A  E
Sbjct: 222 KNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQE 281

Query: 470 SN*D 481
           +  D
Sbjct: 282 AKED 285

>CYSK2_SCHPO (P87131) Cysteine synthase 2 (EC 2.5.1.47) (O-acetylserine|
           sulfhydrylase 2) (O-acetylserine (Thiol)-lyase 2) (CSase
           2)
          Length = 395

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 511 VYQRTQGSKGISVALRCCRL 452
           VY+ T GS GIS+A+ CC L
Sbjct: 108 VYEGTAGSTGISIAMLCCSL 127

>MBB1A_BRARE (Q6DRL5) Myb-binding protein 1A-like protein|
          Length = 1269

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = -1

Query: 594  KEAETGSTEWDDDDAFVAWRENPENYQ-EYIKELRAQRVSQLLSDVADSSPDLQALPQGL 418
            +E+   S + ++D+A    +E  +N++ E +K L+ Q     L+   D S D + L    
Sbjct: 764  EESSDSSDDEEEDEAMEEGQEVDQNFRLELMKVLQGQNA---LATEEDGSDD-EELDDAA 819

Query: 417  SMLLEKMDPSRRAQFVEEVKKVLK*SDDTNASNAE 313
             M   K+D S  + F+E+ KK+    D+ +  N E
Sbjct: 820  MM---KLDGSLASLFLEQRKKIQAKKDEKDRLNKE 851


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,891,837
Number of Sequences: 219361
Number of extensions: 2018638
Number of successful extensions: 5682
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5660
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)