ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1g22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain I... 30 2.9
2FSHR_MACEU (Q6YNB6) Follicle-stimulating hormone receptor precur... 30 3.7
3ASSY_CLOPE (Q8XMJ7) Argininosuccinate synthase (EC 6.3.4.5) (Cit... 29 6.4
4EGF_FELCA (Q95ND4) Pro-epidermal growth factor precursor (EGF) [... 29 8.3

>ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain ISW1 (EC|
           3.6.1.-)
          Length = 1129

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
 Frame = +3

Query: 108 SSHEKRW--------LSAVTG----------MATMFRKRKRCCNNPILGVRNPGQR*DGV 233
           SS +K+W        L AV G          +  +  + ++CCN+P L         DG 
Sbjct: 434 SSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLF--------DGA 485

Query: 234 CRSPCYVRERRLIQXXPGTNVLDALLDNRNQLVLGICYFSEIASTL 371
              P Y  +  L+       VLD LL    +    +  FS+++  L
Sbjct: 486 EPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLL 531



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>FSHR_MACEU (Q6YNB6) Follicle-stimulating hormone receptor precursor (FSH-R)|
           (Follitropin receptor)
          Length = 694

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = -2

Query: 308 KSIKHICARSXLDQSSFTNVARRATHTILALSGIAHXKDRVVATPFPFPKHCCHACDGRE 129
           K++K + ARS  +  +  N+ + A                +V     +P HCC   + R 
Sbjct: 239 KNLKKLKARSAYNFKTLPNLDKFA---------------ELVEANLTYPSHCCAFANWRR 283

Query: 128 PAFLMRTICSSCF 90
            AF +  IC+  F
Sbjct: 284 QAFELHPICNKSF 296



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>ASSY_CLOPE (Q8XMJ7) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 405

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 76  PTNELKHDEQIVLMRNAGSRPSQAWQQCLGKGKGVATTLS 195
           P NE K+D+ + L       P++A    LG  KG+AT+L+
Sbjct: 197 PENEPKYDKILELCNTLEKAPNEAEYITLGFEKGIATSLN 236



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>EGF_FELCA (Q95ND4) Pro-epidermal growth factor precursor (EGF) [Contains:|
           Epidermal growth factor]
          Length = 1210

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -1

Query: 369 GWKQFPRSSKCQGPADSYCQEEHQAHLCPVXIGSIFFHERSTASDTHHLSVVRDCAXQG* 190
           G K   R   C G   S C+++ ++HLC    G       + + D  H   V +CA    
Sbjct: 312 GQKLCLRKGNCTG---SVCEQDSKSHLCTCAEG------YTLSPDGKHCEDVNECAFWNH 362

Query: 189 GC 184
           GC
Sbjct: 363 GC 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,318,062
Number of Sequences: 219361
Number of extensions: 1167646
Number of successful extensions: 2476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2474
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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