ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1g22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479609.1| Oryza sativa (japonica cultivar-group), mRNA 80 8e-12
2dbj|AK062111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 8e-12
3dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
5dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
6ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predic... 44 0.44
7emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 44 0.44
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
9emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.44
10gb|AE013057.1| Thermoanaerobacter tengcongensis MB4, section 84 ... 42 1.7
11emb|AL953849.10| Mouse DNA sequence from clone RP23-384G9 on chr... 42 1.7
12ref|XM_472909.1| Oryza sativa (japonica cultivar-group), predic... 40 6.9
13ref|XM_420052.1| PREDICTED: Gallus gallus similar to MGC68696 pr... 40 6.9
14ref|XM_381885.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 6.9
15gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosom... 40 6.9
16gb|AC112236.3| Homo sapiens BAC clone RP11-308D13 from 4, comple... 40 6.9
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
18gb|AC092340.5| Homo sapiens chromosome 16 clone RP11-24M10, comp... 40 6.9
19gb|AC009142.13| Homo sapiens chromosome 16 clone RP11-543N12, co... 40 6.9
20dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
21dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
22gb|AF018435.1|ACADL3 Mus musculus long-chain acyl-CoA dehydrogen... 40 6.9
23dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome 40 6.9 
>ref|XM_479609.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3465

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 243/312 (77%)
 Strand = Plus / Minus

                                                                        
Query: 58   atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 117
            |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 3302 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 3243

                                                                        
Query: 118  agaaacgctggctctcggccgtcacaggcatggcaacaatgtttaggaaaaggaaaaggt 177
            ||||| ||||| ||  | || ||||||||||||  ||||||  |||| | ||||  ||| 
Sbjct: 3242 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 3183

                                                                        
Query: 178  gttgcaacaaccctatccttggngtgcgcaatcccggacaacgctaagatggtgtgtgtc 237
            ||    |||||   ||||| |  ||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 3182 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 3123

                                                                        
Query: 238  gctcgccgtgctacgttcgtgaaagaagattgatccaatnnngaccgggcacaaatgtgc 297
            |||| |||||| || ||| |||||  ||||||| |||||   ||| | ||||| ||  | 
Sbjct: 3122 gctctccgtgcaacattcttgaaatcagattgacccaatggggactgagcacacattagt 3063

                                                                        
Query: 298  ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 357
            |||| | || |||||||||||||||||||||| ||||| |||  | ||  || | |||||
Sbjct: 3062 ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 3003

                        
Query: 358  ttgcttccaccc 369
            ||||||||||||
Sbjct: 3002 ttgcttccaccc 2991
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>dbj|AK062111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B09, full
           insert sequence
          Length = 499

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 243/312 (77%)
 Strand = Plus / Minus

                                                                       
Query: 58  atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 117
           |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 324 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 265

                                                                       
Query: 118 agaaacgctggctctcggccgtcacaggcatggcaacaatgtttaggaaaaggaaaaggt 177
           ||||| ||||| ||  | || ||||||||||||  ||||||  |||| | ||||  ||| 
Sbjct: 264 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 205

                                                                       
Query: 178 gttgcaacaaccctatccttggngtgcgcaatcccggacaacgctaagatggtgtgtgtc 237
           ||    |||||   ||||| |  ||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 204 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 145

                                                                       
Query: 238 gctcgccgtgctacgttcgtgaaagaagattgatccaatnnngaccgggcacaaatgtgc 297
           |||| |||||| || ||| |||||  ||||||| |||||   ||| | ||||| ||  | 
Sbjct: 144 gctctccgtgcaacattcttgaaatcagattgacccaatggggactgagcacacattagt 85

                                                                       
Query: 298 ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 357
           |||| | || |||||||||||||||||||||| ||||| |||  | ||  || | |||||
Sbjct: 84  ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 25

                       
Query: 358 ttgcttccaccc 369
           ||||||||||||
Sbjct: 24  ttgcttccaccc 13
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>dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069F21, full
            insert sequence
          Length = 3465

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 242/312 (77%)
 Strand = Plus / Minus

                                                                        
Query: 58   atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 117
            |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 3302 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 3243

                                                                        
Query: 118  agaaacgctggctctcggccgtcacaggcatggcaacaatgtttaggaaaaggaaaaggt 177
            ||||| ||||| ||  | || ||||||||||||  ||||||  |||| | ||||  ||| 
Sbjct: 3242 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 3183

                                                                        
Query: 178  gttgcaacaaccctatccttggngtgcgcaatcccggacaacgctaagatggtgtgtgtc 237
            ||    |||||   ||||| |  ||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 3182 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 3123

                                                                        
Query: 238  gctcgccgtgctacgttcgtgaaagaagattgatccaatnnngaccgggcacaaatgtgc 297
            |||| |||||| || ||| |||||  ||||||| |||||   ||| | | ||| ||  | 
Sbjct: 3122 gctctccgtgcaacattcttgaaatcagattgacccaatgcggactgagtacacattagt 3063

                                                                        
Query: 298  ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 357
            |||| | || |||||||||||||||||||||| ||||| |||  | ||  || | |||||
Sbjct: 3062 ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 3003

                        
Query: 358  ttgcttccaccc 369
            ||||||||||||
Sbjct: 3002 ttgcttccaccc 2991
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                            
Query: 58       atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 117
                |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 29299658 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 29299717

                                                 
Query: 118      agaaacgctggctctcggccgtcacaggcatgg 150
                ||||| ||||| ||  | || ||||||||||||
Sbjct: 29299718 agaaatgctggttcctgaccatcacaggcatgg 29299750



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                            
Query: 308      tcttgacaataggaatcagctggtccttggcatttgctacttctcggaaattgcttccac 367
                |||||||||||||||||||||| ||||| |||  | ||  || | |||||||||||||||
Sbjct: 29300523 tcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaattgcttccac 29300582

                  
Query: 368      cc 369
                ||
Sbjct: 29300583 cc 29300584
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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0597G07
          Length = 152928

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                         
Query: 58    atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 117
             |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 88347 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 88406

                                              
Query: 118   agaaacgctggctctcggccgtcacaggcatgg 150
             ||||| ||||| ||  | || ||||||||||||
Sbjct: 88407 agaaatgctggttcctgaccatcacaggcatgg 88439



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 308   tcttgacaataggaatcagctggtccttggcatttgctacttctcggaaattgcttccac 367
             |||||||||||||||||||||| ||||| |||  | ||  || | |||||||||||||||
Sbjct: 89212 tcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaattgcttccac 89271

               
Query: 368   cc 369
             ||
Sbjct: 89272 cc 89273
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>ref|XM_472910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1653

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 147 atggcaacaatgtttaggaaaa 168
           ||||||||||||||||||||||
Sbjct: 559 atggcaacaatgtttaggaaaa 580
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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 147   atggcaacaatgtttaggaaaa 168
             ||||||||||||||||||||||
Sbjct: 34009 atggcaacaatgtttaggaaaa 34030



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   atggcaacaatgtttaggaa 166
             ||||||||||||||||||||
Sbjct: 29155 atggcaacaatgtttaggaa 29174
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 147      atggcaacaatgtttaggaaaa 168
                ||||||||||||||||||||||
Sbjct: 24037030 atggcaacaatgtttaggaaaa 24037051



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 147      atggcaacaatgtttaggaa 166
                ||||||||||||||||||||
Sbjct: 24032176 atggcaacaatgtttaggaa 24032195
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>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
            sequence
          Length = 90767

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 147  atggcaacaatgtttaggaaaa 168
            ||||||||||||||||||||||
Sbjct: 3280 atggcaacaatgtttaggaaaa 3301
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>gb|AE013057.1| Thermoanaerobacter tengcongensis MB4, section 84 of 244 of the complete
             genome
          Length = 14939

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   gcttgatgctcttcttgacaa 316
             |||||||||||||||||||||
Sbjct: 11736 gcttgatgctcttcttgacaa 11756
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>emb|AL953849.10| Mouse DNA sequence from clone RP23-384G9 on chromosome 2, complete
             sequence
          Length = 38989

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 326   gctggtccttggcatttgcta 346
             |||||||||||||||||||||
Sbjct: 22123 gctggtccttggcatttgcta 22143
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>ref|XM_472909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1665

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 atggcaacaatgtttaggaa 166
           ||||||||||||||||||||
Sbjct: 562 atggcaacaatgtttaggaa 581
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>ref|XM_420052.1| PREDICTED: Gallus gallus similar to MGC68696 protein (LOC422046),
           mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 aggaaaaggaaaaggtgttg 181
           ||||||||||||||||||||
Sbjct: 330 aggaaaaggaaaaggtgttg 349
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>ref|XM_381885.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01709.1)
            partial mRNA
          Length = 3045

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  gacaataggaatcagctggt 331
            ||||||||||||||||||||
Sbjct: 2512 gacaataggaatcagctggt 2531
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>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence
          Length = 183428

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   tcagctggtccttggcattt 342
             ||||||||||||||||||||
Sbjct: 96876 tcagctggtccttggcattt 96895
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>gb|AC112236.3| Homo sapiens BAC clone RP11-308D13 from 4, complete sequence
          Length = 160615

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   gctcttcttgacaataggaa 322
             ||||||||||||||||||||
Sbjct: 51582 gctcttcttgacaataggaa 51563
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    aggaaaaggaaaaggtgttg 181
              ||||||||||||||||||||
Sbjct: 777654 aggaaaaggaaaaggtgttg 777673
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>gb|AC092340.5| Homo sapiens chromosome 16 clone RP11-24M10, complete sequence
          Length = 146524

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  aatgtttaggaaaaggaaaa 174
            ||||||||||||||||||||
Sbjct: 8981 aatgtttaggaaaaggaaaa 8962
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>gb|AC009142.13| Homo sapiens chromosome 16 clone RP11-543N12, complete sequence
          Length = 195848

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aatgtttaggaaaaggaaaa 174
             ||||||||||||||||||||
Sbjct: 49240 aatgtttaggaaaaggaaaa 49259
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>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0427G12
          Length = 185545

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   aggaaaaggaaaaggtgttg 181
             ||||||||||||||||||||
Sbjct: 76874 aggaaaaggaaaaggtgttg 76893
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>dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full
           insert sequence
          Length = 1992

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 atggcaacaatgtttaggaa 166
           ||||||||||||||||||||
Sbjct: 572 atggcaacaatgtttaggaa 591
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>gb|AF018435.1|ACADL3 Mus musculus long-chain acyl-CoA dehydrogenase (Acadl) gene, exons 2
            and 3
          Length = 5283

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 323  tcagctggtccttggcattt 342
            ||||||||||||||||||||
Sbjct: 2686 tcagctggtccttggcattt 2667
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>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome
          Length = 191952

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     atcaggcaaaacatactggc 56
              ||||||||||||||||||||
Sbjct: 154210 atcaggcaaaacatactggc 154229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,120,504
Number of Sequences: 3902068
Number of extensions: 3120504
Number of successful extensions: 61041
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60939
Number of HSP's gapped (non-prelim): 97
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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