ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1g21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
4gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete... 56 1e-04
5gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
6dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds 50 0.008
8ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.12
9ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative... 46 0.12
10ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
11ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G181... 44 0.47
12gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis tha... 44 0.47
13gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana... 44 0.47
14gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LA... 44 0.47
15ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
16ref|NM_192960.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
17gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, comp... 42 1.8
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.8
19ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.8
20emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in... 42 1.8
21dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.8
22gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.8
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
24gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, comp... 42 1.8
25dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
26dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
27dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
28dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
29gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRN... 42 1.8
30gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.8
31ref|NM_114843.1| Arabidopsis thaliana nucleoside-triphosphatase/... 40 7.3
32gb|AY364319.1| Felis catus chromosome A2 endogenous virus endoge... 40 7.3
33gb|AY364318.1| Felis catus chromosome A1 endogenous virus endoge... 40 7.3
34emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 7.3
35emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 i... 40 7.3
36ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protei... 40 7.3
37emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chro... 40 7.3
38emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chr... 40 7.3
39gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 7.3
40emb|AL132965.1|ATT16K5 Arabidopsis thaliana DNA chromosome 3, BA... 40 7.3
41gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds 40 7.3
42gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, comp... 40 7.3
43gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete... 40 7.3
44dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
45emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in... 40 7.3
46gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence 40 7.3
47gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia vir... 40 7.3 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 449    ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
              |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 167463 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 167411
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 449     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8850764 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8850816



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 452      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24578395 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24578346



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 481      gccatggaggtgcatggggtt 501
                |||||||||||||||||||||
Sbjct: 24569674 gccatggaggtgcatggggtt 24569654
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 449     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8922427 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8922479



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 452      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24890065 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24890016



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 449      ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
                ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 24881376 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 24881324
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>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds
          Length = 2048

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 305  aaatgacagtgcaggaaccacacacctggatt 336
            ||||||||||||| ||||||||||||||||||
Sbjct: 1680 aaatgacagtgcatgaaccacacacctggatt 1649
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>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0041L19, complete sequence
          Length = 155086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 452   agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
             ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 55297 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 55248



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 449   ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
             ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 46608 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 46556
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>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full
            insert sequence
          Length = 2095

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 452  agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 501
            ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 1552 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 1503
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>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds
          Length = 2056

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 455  ccctgcgcgaggacgaacatgtcctggccatggaggtgcat 495
            ||||| ||||||||||| | ||| |||||||||||||||||
Sbjct: 1483 ccctgggcgaggacgaagaagtcgtggccatggaggtgcat 1443
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>ref|XM_467807.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1740

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 302  tcaaaatgacagtgcaggaaccacacacctggatt 336
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1637 tcaaaatggcaatgcatgaaccacacacctggatt 1603
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>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase
            (OSJNBb0040I11.7), mRNA
          Length = 1404

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 302  tcaaaatgacagtgcaggaaccacacacctggatt 336
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1301 tcaaaatggcaatgcatgaaccacacacctggatt 1267
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>ref|NM_193864.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1800

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 302  tcaaaatgacagtgcaggaaccacacacctggatt 336
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1697 tcaaaatggcaatgcatgaaccacacacctggatt 1663
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>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds
          Length = 1931

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 389  ttcctcaccggcggatccaccaggttgtac 418
            |||||| ||||||||||||||| |||||||
Sbjct: 1599 ttcctctccggcggatccaccaagttgtac 1570
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>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81129

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 389   ttcctcaccggcggatccaccaggttgtac 418
             |||||| ||||||||||||||| |||||||
Sbjct: 45254 ttcctctccggcggatccaccaagttgtac 45283
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>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I,
             complete sequence
          Length = 92948

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 389   ttcctcaccggcggatccaccaggttgtac 418
             |||||| ||||||||||||||| |||||||
Sbjct: 30558 ttcctctccggcggatccaccaagttgtac 30587
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>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds
          Length = 2030

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 311  cagtgcaggaaccacacacctggatt 336
            ||||||| ||||||||||||||||||
Sbjct: 1714 cagtgcatgaaccacacacctggatt 1689
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>ref|NM_190554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1734

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 305  aaatgacagtgcaggaaccacacacctgg 333
            ||||||||||||| |||||| ||||||||
Sbjct: 1628 aaatgacagtgcatgaaccatacacctgg 1600
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>ref|NM_192960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1689

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 382  gacggtgttcctcaccggcggatccaccaggttgtac 418
            ||||||||||||| ||||||| || || |||||||||
Sbjct: 1506 gacggtgttcctctccggcgggtcgacgaggttgtac 1470
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>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence
          Length = 247961

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   aggctttattcaaacaactgt 130
             |||||||||||||||||||||
Sbjct: 60267 aggctttattcaaacaactgt 60287
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 382     gacggtgttcctcaccggcgg 402
               |||||||||||||||||||||
Sbjct: 1591850 gacggtgttcctcaccggcgg 1591830
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>ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09646.1)
            partial mRNA
          Length = 1719

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 308  tgacagtgcaggaaccacacacctggatt 336
            ||||||||||||| ||| |||||||||||
Sbjct: 1550 tgacagtgcaggagccatacacctggatt 1522
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>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22,
             complete sequence
          Length = 147994

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 330   ctggatttttggtgacaaatc 350
             |||||||||||||||||||||
Sbjct: 74247 ctggatttttggtgacaaatc 74267
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 382     gacggtgttcctcaccggcgg 402
               |||||||||||||||||||||
Sbjct: 1974406 gacggtgttcctcaccggcgg 1974386
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>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306,  section 145 of 469 of the
            complete genome
          Length = 11162

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 382  gacggtgttcctcaccggcgg 402
            |||||||||||||||||||||
Sbjct: 4020 gacggtgttcctcaccggcgg 4000
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 382      gacggtgttcctcaccggcggatccaccaggttgtac 418
                ||||||||||||| ||||||| || || |||||||||
Sbjct: 25435486 gacggtgttcctctccggcgggtcgacgaggttgtac 25435522



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 305      aaatgacagtgcaggaaccacacacctg 332
                ||||||||||||| |||||| |||||||
Sbjct: 36159512 aaatgacagtgcatgaaccatacacctg 36159539
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>gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, complete sequence
          Length = 125118

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 aggctttattcaaacaactgt 130
           |||||||||||||||||||||
Sbjct: 833 aggctttattcaaacaactgt 813
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>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0663E10
          Length = 162297

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 382    gacggtgttcctcaccggcggatccaccaggttgtac 418
              ||||||||||||| ||||||| || || |||||||||
Sbjct: 125486 gacggtgttcctctccggcgggtcgacgaggttgtac 125522
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>dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full
            insert sequence
          Length = 2065

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 481  gccatggaggtgcatggggtt 501
            |||||||||||||||||||||
Sbjct: 1549 gccatggaggtgcatggggtt 1529
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>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full
            insert sequence
          Length = 2066

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 305  aaatgacagtgcaggaaccacacacctgg 333
            ||||||||||||| |||||| ||||||||
Sbjct: 1744 aaatgacagtgcatgaaccatacacctgg 1716
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>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full
           insert sequence
          Length = 644

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 305 aaatgacagtgcaggaaccacacacctgg 333
           ||||||||||||| |||||| ||||||||
Sbjct: 320 aaatgacagtgcatgaaccatacacctgg 292
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>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds
          Length = 1874

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 305  aaatgacagtgcaggaaccacacacctgg 333
            ||||||||||||| |||||| ||||||||
Sbjct: 1550 aaatgacagtgcatgaaccatacacctgg 1522
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 382     gacggtgttcctcaccggcgg 402
               |||||||||||||||||||||
Sbjct: 1996453 gacggtgttcctcaccggcgg 1996433
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>ref|NM_114843.1| Arabidopsis thaliana nucleoside-triphosphatase/ nucleotide binding
           AT3G49830 mRNA, complete cds
          Length = 1422

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 203 agcttggaagatcttttangagg 225
           |||||||||||||||||| ||||
Sbjct: 605 agcttggaagatcttttacgagg 627
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>gb|AY364319.1| Felis catus chromosome A2 endogenous virus endogenous feline leukemia
            virus enFeLV-GGAG, complete sequence
          Length = 9867

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 481  gccatggaggtgcatggggttagc 504
            ||||||||| ||||||||||||||
Sbjct: 7954 gccatggagatgcatggggttagc 7931
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>gb|AY364318.1| Felis catus chromosome A1 endogenous virus endogenous feline leukemia
            virus enFeLV-AGTT, complete sequence
          Length = 9895

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 481  gccatggaggtgcatggggttagc 504
            ||||||||| ||||||||||||||
Sbjct: 7967 gccatggagatgcatggggttagc 7944
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 406     caccaggttgtacgtcgcga 425
               ||||||||||||||||||||
Sbjct: 1635820 caccaggttgtacgtcgcga 1635801
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>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10,
            complete sequence
          Length = 200648

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   cactcagcgattaaacaata 60
            ||||||||||||||||||||
Sbjct: 7575 cactcagcgattaaacaata 7594
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>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444
           (LOC611444), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 447 gcccgagcccctgcgcgagg 466
           ||||||||||||||||||||
Sbjct: 405 gcccgagcccctgcgcgagg 386
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>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   ggaagagtcgaatccaaagttgga 253
             ||||||||| ||||||||||||||
Sbjct: 91740 ggaagagtcaaatccaaagttgga 91717
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>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    ggaagagtcgaatccaaagttgga 253
              ||||||||| ||||||||||||||
Sbjct: 177883 ggaagagtcaaatccaaagttgga 177860
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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    agaaatacgaaaatctcgaaacaa 154
              ||||||| ||||||||||||||||
Sbjct: 112244 agaaataggaaaatctcgaaacaa 112267
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>emb|AL132965.1|ATT16K5 Arabidopsis thaliana DNA chromosome 3, BAC clone T16K5
          Length = 97711

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 203   agcttggaagatcttttangagg 225
             |||||||||||||||||| ||||
Sbjct: 72739 agcttggaagatcttttacgagg 72761
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>gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds
          Length = 3421

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 91  aaacaaggcaacccagcctaggct 114
           ||||||||||||||||||| ||||
Sbjct: 669 aaacaaggcaacccagcctgggct 646
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>gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, complete sequence
          Length = 177284

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 91     aaacaaggcaacccagcctaggct 114
              ||||||||||||||||||| ||||
Sbjct: 109248 aaacaaggcaacccagcctgggct 109225
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>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 305  aaatgacagtgcaggaaccacacacctggatt 336
            ||||||||||||| |||||| || ||||||||
Sbjct: 1706 aaatgacagtgcatgaaccaaacccctggatt 1675
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>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 305   aaatgacagtgcaggaaccacacacctg 332
             ||||||||||||| |||||| |||||||
Sbjct: 36525 aaatgacagtgcatgaaccatacacctg 36552
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>emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in linkage group 10,
              complete sequence
          Length = 111720

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     cactcagcgattaaacaata 60
              ||||||||||||||||||||
Sbjct: 101117 cactcagcgattaaacaata 101136
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>gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 481  gccatggaggtgcatggggttagc 504
            ||||||||| ||||||||||||||
Sbjct: 1281 gccatggagatgcatggggttagc 1258
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>gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia virus envelope protein gene,
            complete cds
          Length = 2615

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 481  gccatggaggtgcatggggttagc 504
            ||||||||| ||||||||||||||
Sbjct: 1341 gccatggagatgcatggggttagc 1318


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,573,468
Number of Sequences: 3902068
Number of extensions: 3573468
Number of successful extensions: 64819
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64573
Number of HSP's gapped (non-prelim): 244
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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