ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1g19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycos... 29 3.0
2AT8B1_HUMAN (O43520) Probable phospholipid-transporting ATPase I... 28 8.8

>DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycosylase-related|
           protein DME)
          Length = 1729

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 136 PKICCLSHSETPSTQERVPEISFRSRSIVDAGKTEHL*WCT 14
           P+ C L+ +E PS QE+V   S    S VD+G  E L  C+
Sbjct: 817 PEGCILNLNEIPSWQEKVQHPSDMEVSGVDSGSKEQLRDCS 857



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>AT8B1_HUMAN (O43520) Probable phospholipid-transporting ATPase IC (EC 3.6.3.1)|
           (Familial intrahepatic cholestasis type 1) (ATPase class
           I type 8B member 1)
          Length = 1251

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 114 CDKQQIFGDHRDPAQLNLTKV 176
           C   QI+GDHRD +Q N  K+
Sbjct: 470 CINGQIYGDHRDASQHNHNKI 490


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,211,509
Number of Sequences: 219361
Number of extensions: 314516
Number of successful extensions: 808
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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