Clone Information

BLAST Search Result

Clone Name	rbags1g15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHM2A_HUMAN (O43633) Charged multivesicular body protein 2a (Chr...	150	4e-36
2	CHM2A_MOUSE (Q9DB34) Charged multivesicular body protein 2a (Chr...	148	1e-35
3	CHM2A_XENLA (Q6IP52) Charged multivesicular body protein 2a (Chr...	146	4e-35
4	CHM2A_XENTR (Q6DFS6) Charged multivesicular body protein 2a (Chr...	145	8e-35
5	CHM2A_BRARE (Q7ZW25) Charged multivesicular body protein 2a (Chr...	145	1e-34
6	CHM2A_CHICK (Q5ZHN1) Charged multivesicular body protein 2a (Chr...	141	1e-33
7	YDS1_SCHPO (O14177) Hypothetical protein C4F8.01 in chromosome I	104	3e-22
8	CH2BA_XENLA (Q7SYR0) Charged multivesicular body protein 2b-A (C...	87	4e-17
9	CHM2B_XENTR (Q6NVL7) Charged multivesicular body protein 2b (Chr...	86	9e-17
10	CH2BB_XENLA (Q66IV6) Charged multivesicular body protein 2b-B (C...	86	9e-17
11	CHM2B_CHICK (Q5F3A2) Charged multivesicular body protein 2b (Chr...	85	2e-16
12	CHM2B_BRARE (Q6NXD2) Charged multivesicular body protein 2b (Chr...	85	2e-16
13	CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b (Chr...	84	5e-16
14	CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b (Chr...	84	5e-16
15	CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b (Chr...	82	1e-15
16	CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b (Chr...	82	1e-15
17	DID4_YEAST (P36108) DOA4-independent degradation protein 4 (Vacu...	81	2e-15
18	CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b (Chr...	68	2e-11
19	CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b (Chr...	68	3e-11
20	CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b (Chr...	68	3e-11
21	CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1 (C...	67	4e-11
22	CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2 (C...	67	6e-11
23	CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b (Chr...	66	8e-11
24	CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b (Chr...	64	4e-10
25	CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b (Chr...	62	1e-09
26	CHMP3_BRARE (Q6NY88) Charged multivesicular body protein 3 (Chro...	58	3e-08
27	CHM1A_BRARE (Q6PHF0) Charged multivesicular body protein 1a (Chr...	57	6e-08
28	CHM1A_MOUSE (Q921W0) Charged multivesicular body protein 1a (Chr...	55	1e-07
29	CHM1A_XENLA (Q6NUD8) Charged multivesicular body protein 1a (Chr...	55	2e-07
30	CHM1A_PONPY (Q5R605) Charged multivesicular body protein 1a (Chr...	55	2e-07
31	CHM1A_HUMAN (Q9HD42) Charged multivesicular body protein 1a (Chr...	55	2e-07
32	CHMP3_PONPY (Q5RAU5) Charged multivesicular body protein 3 (Chro...	53	9e-07
33	CHMP3_BOVIN (Q58CS7) Charged multivesicular body protein 3 (Chro...	53	9e-07
34	CHMP3_MOUSE (Q9CQ10) Charged multivesicular body protein 3 (Chro...	52	1e-06
35	CHMP3_HUMAN (Q9Y3E7) Charged multivesicular body protein 3 (Chro...	52	1e-06
36	CHMP3_RAT (Q8CGS4) Charged multivesicular body protein 3 (Chroma...	52	1e-06
37	CHMP3_MACFA (Q4R574) Charged multivesicular body protein 3 (Chro...	51	3e-06
38	CHMP3_XENTR (Q5BKM3) Charged multivesicular body protein 3 (Chro...	50	6e-06
39	CHMP3_XENLA (Q6NRM7) Charged multivesicular body protein 3 (Chro...	48	2e-05
40	DID2_YEAST (P69771) Vacuolar protein sorting protein 46 (Charged...	47	6e-05
41	SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar prot...	38	0.029
42	SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar prot...	32	1.2
43	MAD13_ORYSA (Q2QW53) MADS-box transcription factor 13 (OsMADS13)...	32	1.6
44	SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar prot...	31	2.7
45	CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chro...	31	3.6
46	NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...	30	4.6
47	CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chro...	30	7.9

>CHM2A_HUMAN (O43633) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a) (Vacuolar
           protein sorting 2-1) (Vps2-1) (hVps2-1) (Putative breast
           adenocarcinoma marker BC-2)
          Length = 222

 Score =  150 bits (378), Expect = 4e-36
 Identities = 81/173 (46%), Positives = 106/173 (61%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AKQGQM AV++MAKD +RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM
Sbjct: 51  AKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             MNRQ+ +P +QKIM +FE Q E M+M  E+M DAIDDA+           +VSQVLDE
Sbjct: 111 GTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDE 170

Query: 278 IGIDINSELXXXXXXXXXXXXXXXXXXVQAEAAXXXXXXXXXDLQARLDNLRK 120
           +G+ +  EL                   +AEAA         DL+ RL NLR+
Sbjct: 171 LGLSLTDEL--SNLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRR 221

to top

>CHM2A_MOUSE (Q9DB34) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a) (Vacuolar
           protein sorting 2) (mVps2)
          Length = 222

 Score =  148 bits (374), Expect = 1e-35
 Identities = 80/173 (46%), Positives = 105/173 (60%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AKQGQM AV++MAKD +RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM
Sbjct: 51  AKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             MNRQ+ +P +QKIM +FE Q E M+M  E+M DAIDDA+           +VSQVLDE
Sbjct: 111 GTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDE 170

Query: 278 IGIDINSELXXXXXXXXXXXXXXXXXXVQAEAAXXXXXXXXXDLQARLDNLRK 120
           +G+ +  EL                   +AEA          DL+ RL NLR+
Sbjct: 171 LGLSLTDEL--SNLPSTGGSLSVAAGGKKAEATASALADADADLEERLKNLRR 221

to top

>CHM2A_XENLA (Q6IP52) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a)
          Length = 220

 Score =  146 bits (369), Expect = 4e-35
 Identities = 79/173 (45%), Positives = 106/173 (61%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AKQGQM AVK+MAKD +RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM
Sbjct: 51  AKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
           + MNRQ+ +P +QKIM +FE Q+E M+M  E+M DAIDDA+           +VSQVLDE
Sbjct: 111 ATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDE 170

Query: 278 IGIDINSELXXXXXXXXXXXXXXXXXXVQAEAAXXXXXXXXXDLQARLDNLRK 120
           +G+ +  EL                   +   A         DL+ RL+NLR+
Sbjct: 171 LGLTLTDEL----SNLPSTGGSLSVAGAKKGEATAALADADADLEERLNNLRR 219

to top

>CHM2A_XENTR (Q6DFS6) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a)
          Length = 220

 Score =  145 bits (367), Expect = 8e-35
 Identities = 79/173 (45%), Positives = 106/173 (61%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AKQGQM AVK+MAKD +RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM
Sbjct: 51  AKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
           + MNRQ+ +P +QKIM +FE Q+E M+M  E+M DAIDDA+           +VSQVLDE
Sbjct: 111 ATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDE 170

Query: 278 IGIDINSELXXXXXXXXXXXXXXXXXXVQAEAAXXXXXXXXXDLQARLDNLRK 120
           +G+ +  EL                    + A          DL+ RL+NLR+
Sbjct: 171 LGLTLTDELSNLPSTGGSLSVAGAKKGEPSAA----LADADADLEERLNNLRR 219

to top

>CHM2A_BRARE (Q7ZW25) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a)
          Length = 220

 Score =  145 bits (365), Expect = 1e-34
 Identities = 71/129 (55%), Positives = 95/129 (73%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AKQGQM AVK+MAKD +RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM
Sbjct: 51  AKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
           + MNRQ+ +P +QKIM +FE Q+E M+M  E+M DAIDDA+           +VSQVLDE
Sbjct: 111 ATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDE 170

Query: 278 IGIDINSEL 252
           +G+ ++ EL
Sbjct: 171 LGLTLSDEL 179

to top

>CHM2A_CHICK (Q5ZHN1) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a)
          Length = 220

 Score =  141 bits (356), Expect = 1e-33
 Identities = 79/173 (45%), Positives = 104/173 (60%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AKQGQM AVK+MAKD +RTR  + KF  +++ +Q VSL+IQTLKS  +M  AMKGVTKAM
Sbjct: 51  AKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
           + MNRQ+ +P +QKIM +FE Q   M+M  E+M DAIDDA+           +VSQVLDE
Sbjct: 111 ATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDE 170

Query: 278 IGIDINSELXXXXXXXXXXXXXXXXXXVQAEAAXXXXXXXXXDLQARLDNLRK 120
           +G+++  EL                   +A  A         DL+ RL NLR+
Sbjct: 171 LGLNLTDEL----ATLPPPGGSLAAGEGRAAEAAAALADADADLEERLKNLRR 219

to top

>YDS1_SCHPO (O14177) Hypothetical protein C4F8.01 in chromosome I|
          Length = 210

 Score =  104 bits (259), Expect = 3e-22
 Identities = 53/129 (41%), Positives = 86/129 (66%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G  GA ++ A+D +R R+   K    K+QLQ +SLR+QT+++++ M ++M+G T+ +
Sbjct: 54  AKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLL 113

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
           + MN+ MNIPA+ +I + FE +NE ME   E++ + +DDAL          ELV++VLDE
Sbjct: 114 TGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDAL-EEDDEEEADELVNKVLDE 172

Query: 278 IGIDINSEL 252
           IG+D++  L
Sbjct: 173 IGVDLSQGL 181

to top

>CH2BA_XENLA (Q7SYR0) Charged multivesicular body protein 2b-A|
           (Chromatin-modifying protein 2b-A) (CHMP2b-A)
          Length = 214

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 44/129 (34%), Positives = 74/129 (57%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A KV+AK  ++ R Q T+ YA+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CHM2B_XENTR (Q6NVL7) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 214

 Score = 85.9 bits (211), Expect = 9e-17
 Identities = 43/129 (33%), Positives = 74/129 (57%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A +V+AK  ++ R Q T+ YA+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CH2BB_XENLA (Q66IV6) Charged multivesicular body protein 2b-B|
           (Chromatin-modifying protein 2b-B) (CHMP2b-B)
          Length = 214

 Score = 85.9 bits (211), Expect = 9e-17
 Identities = 43/129 (33%), Positives = 74/129 (57%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A +V+AK  ++ R Q T+ YA+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CHM2B_CHICK (Q5F3A2) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 214

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 43/129 (33%), Positives = 73/129 (56%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A KV+AK  ++ R Q  + YA+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CHM2B_BRARE (Q6NXD2) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 214

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 42/129 (32%), Positives = 74/129 (57%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A KV+AK  ++ R Q T+ YA+ S++  +S + + + S   M  AM   TK M
Sbjct: 50  AKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + +++F+ +  KM+M  E+M D +D+            ++V+QVLDE
Sbjct: 110 QAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 83.6 bits (205), Expect = 5e-16
 Identities = 43/129 (33%), Positives = 73/129 (56%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A KV+AK  +  R Q T+ +A+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b) (CHMP2.5)
           (Vacuolar protein sorting 2-2) (Vps2-2) (hVps2-2)
          Length = 213

 Score = 83.6 bits (205), Expect = 5e-16
 Identities = 43/129 (33%), Positives = 73/129 (56%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A KV+AK  +  R Q T+ +A+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 42/129 (32%), Positives = 73/129 (56%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A +V+AK  +  R Q T+ +A+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 42/129 (32%), Positives = 73/129 (56%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK G   A +V+AK  +  R Q T+ +A+ S++  +S + + + S   M  AM    K M
Sbjct: 50  AKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTM 109

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             +N++M+     + M++F+ +N KMEM  E++ D +DD            ++V+QVLDE
Sbjct: 110 QAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

Query: 278 IGIDINSEL 252
           IGI+I+ ++
Sbjct: 170 IGIEISGKM 178

to top

>DID4_YEAST (P36108) DOA4-independent degradation protein 4 (Vacuolar protein|
           sorting-associated protein VPS2)
          Length = 151

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
 Frame = -1

Query: 554 LKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMSQMNRQMNIPALQKIMRDFEMQNEKMEM 375
           +K+QLQ +SLRIQ ++S+  M  +M   T  ++ MNR MN+P LQ+I  +FE Q++ M  
Sbjct: 1   MKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQ 60

Query: 374 VSEVMGDAIDDAL-XXXXXXXXXXELVSQVLDEIGIDINSELXXXXXXXXXXXXXXXXXX 198
             E M +AID+ +           E+V++VLDEIG+D+NS+L                  
Sbjct: 61  RQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQSTPQNLVSNAPIAETAM 120

Query: 197 VQAE---AAXXXXXXXXXDLQARLDNLRK 120
              E   A          DLQARL+ L+K
Sbjct: 121 GIPEPIGAGSEFHGNPDDDLQARLNTLKK 149

to top

>CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 33/128 (25%), Positives = 66/128 (51%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G M   ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K M 
Sbjct: 41  QKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              + MN+  +  +M  FE Q E +++ +  M D++               L+ ++ DE 
Sbjct: 101 ATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEA 160

Query: 275 GIDINSEL 252
           G+D+N EL
Sbjct: 161 GLDLNMEL 168

to top

>CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b) (CHMP1.5)
           (Vacuolar protein sorting 46-2) (Vps46-2) (hVps46-2)
          Length = 199

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 33/128 (25%), Positives = 67/128 (52%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G M   ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K+M 
Sbjct: 41  QKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              + MN+  +  +M  FE Q E +++ ++ M D +               L+ ++ DE 
Sbjct: 101 ATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEA 160

Query: 275 GIDINSEL 252
           G+D+N EL
Sbjct: 161 GLDLNMEL 168

to top

>CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 33/128 (25%), Positives = 67/128 (52%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G M   ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K+M 
Sbjct: 41  QKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              + MN+  +  +M  FE Q E +++ ++ M D +               L+ ++ DE 
Sbjct: 101 ATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEA 160

Query: 275 GIDINSEL 252
           G+D+N EL
Sbjct: 161 GLDLNMEL 168

to top

>CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1|
           (Chromatin-modifying protein 1b-1) (CHMP1b-1)
          Length = 199

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 33/128 (25%), Positives = 67/128 (52%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G M   ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K+M 
Sbjct: 41  QKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              + MN+  +  +M  FE Q E +++ ++ M D +               L+ ++ DE 
Sbjct: 101 ATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEA 160

Query: 275 GIDINSEL 252
           G+D+N EL
Sbjct: 161 GLDLNMEL 168

to top

>CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2|
           (Chromatin-modifying protein 1b-2) (CHMP1b-2)
          Length = 199

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 33/128 (25%), Positives = 66/128 (51%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G     ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K+M 
Sbjct: 41  QKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              R MN+  +  +M  FE Q E +++ ++ M D +               L+ ++ DE 
Sbjct: 101 ATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEA 160

Query: 275 GIDINSEL 252
           G+D+N EL
Sbjct: 161 GLDLNMEL 168

to top

>CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 32/128 (25%), Positives = 68/128 (53%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G M   ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K+M 
Sbjct: 41  QKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              + MN+  +  +M  FE Q E +++ ++ M + + +             L+ ++ DE 
Sbjct: 101 ATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEA 160

Query: 275 GIDINSEL 252
           G+D+N EL
Sbjct: 161 GLDLNMEL 168

to top

>CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 32/128 (25%), Positives = 67/128 (52%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G     ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K+M 
Sbjct: 41  QKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              + MN+  +  +M  FE Q E +++ ++ M D + +             L+ ++ DE 
Sbjct: 101 TTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEA 160

Query: 275 GIDINSEL 252
           G+D+N EL
Sbjct: 161 GLDLNMEL 168

to top

>CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 31/128 (24%), Positives = 67/128 (52%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           ++G     ++ A++ IR ++Q   F  + +++  V+ R+QT  +   + ++M GV K+M 
Sbjct: 41  QKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMD 100

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
              + MN+  +  +M  FE Q E +++ ++ M D + +             L+ ++ DE 
Sbjct: 101 ATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEA 160

Query: 275 GIDINSEL 252
           G+D++ EL
Sbjct: 161 GLDLSMEL 168

to top

>CHMP3_BRARE (Q6NY88) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 220

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 33/121 (27%), Positives = 59/121 (48%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+GQ     ++AK+ I+++  I K YA K+Q+  V L ++   S   +  A++  T+ M
Sbjct: 51  AKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDE 279
             M   + IP +Q  MRD   +  K  ++ E++ D ++               V ++L E
Sbjct: 111 KAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFE 170

Query: 278 I 276
           I
Sbjct: 171 I 171

to top

>CHM1A_BRARE (Q6PHF0) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 198

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 28/128 (21%), Positives = 68/128 (53%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           +Q  +   +V A++ IR +++   +  + S++  V+ ++QT  + + + + M  VTKA+ 
Sbjct: 38  QQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALD 97

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
           +    M++  +  +M  FE Q + +++ + VM D++  A           +L+ Q+ +E 
Sbjct: 98  KALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEES 157

Query: 275 GIDINSEL 252
           G+++  +L
Sbjct: 158 GLEVEDQL 165

to top

>CHM1A_MOUSE (Q921W0) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 28/128 (21%), Positives = 67/128 (52%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           +Q  +   +V A++ IR +++   +  + S++  V+ ++QT  + + + + M  VTKA+ 
Sbjct: 38  QQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALD 97

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
           +    M++  +  +M  FE Q + +++ + VM D++  A            L+ Q+ +E 
Sbjct: 98  KALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEEN 157

Query: 275 GIDINSEL 252
           G+++  +L
Sbjct: 158 GLEVLDQL 165

to top

>CHM1A_XENLA (Q6NUD8) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/128 (21%), Positives = 68/128 (53%)
 Frame = -1

Query: 635 KQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMS 456
           +Q  +   +V A++ IR +++   +  + S++  V+ ++QT  + + + + M  VTKA+ 
Sbjct: 38  QQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALD 97

Query: 455 QMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEI 276
           +    M++  +  +M  F+ Q + +++ + VM D++  A+           L+ Q+ +E 
Sbjct: 98  KALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEEN 157

Query: 275 GIDINSEL 252
           G+++  +L
Sbjct: 158 GLEVMDQL 165

to top

>CHM1A_PONPY (Q5R605) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 28/127 (22%), Positives = 66/127 (51%)
 Frame = -1

Query: 632 QGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMSQ 453
           Q  +   +V A++ IR +++   +  + S++  V+ ++QT  + + + + M  VTKA+ +
Sbjct: 39  QKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDK 98

Query: 452 MNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEIG 273
               M++  +  +M  FE Q + +++ + VM D++  A            L+ Q+ +E G
Sbjct: 99  ALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENG 158

Query: 272 IDINSEL 252
           +++  +L
Sbjct: 159 LEVLDQL 165

to top

>CHM1A_HUMAN (Q9HD42) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a) (Vacuolar
           protein sorting 46-1) (Vps46-1) (hVps46-1)
          Length = 196

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 28/127 (22%), Positives = 66/127 (51%)
 Frame = -1

Query: 632 QGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMSQ 453
           Q  +   +V A++ IR +++   +  + S++  V+ ++QT  + + + + M  VTKA+ +
Sbjct: 39  QKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDK 98

Query: 452 MNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEIG 273
               M++  +  +M  FE Q + +++ + VM D++  A            L+ Q+ +E G
Sbjct: 99  ALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENG 158

Query: 272 IDINSEL 252
           +++  +L
Sbjct: 159 LEVLDQL 165

to top

>CHMP3_PONPY (Q5RAU5) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 221

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 26/98 (26%), Positives = 52/98 (53%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+GQ     V+AK+ IR+R  ++K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + IP +Q  MR+   +  K  ++ E++ D  +
Sbjct: 111 KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 148

to top

>CHMP3_BOVIN (Q58CS7) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 221

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 26/98 (26%), Positives = 52/98 (53%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+GQ     V+AK+ IR+R  ++K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + IP +Q  MR+   +  K  ++ E++ D  +
Sbjct: 111 KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 148

to top

>CHMP3_MOUSE (Q9CQ10) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 223

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/98 (26%), Positives = 52/98 (53%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+GQ     V+AK+ IR+R  ++K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + IP +Q  MR+   +  K  ++ E++ D  +
Sbjct: 111 KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 148

to top

>CHMP3_HUMAN (Q9Y3E7) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24) (hVps24)
           (Neuroendocrine differentiation factor)
          Length = 221

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/98 (26%), Positives = 52/98 (53%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+GQ     V+AK+ IR+R  ++K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + IP +Q  MR+   +  K  ++ E++ D  +
Sbjct: 111 KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 148

to top

>CHMP3_RAT (Q8CGS4) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24) (mVps24p)
          Length = 222

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/98 (26%), Positives = 52/98 (53%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+GQ     V+AK+ IR+R  ++K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + IP +Q  MR+   +  K  ++ E++ D  +
Sbjct: 111 KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 148

to top

>CHMP3_MACFA (Q4R574) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 221

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 25/98 (25%), Positives = 52/98 (53%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+GQ     V+AK+ IR+R  ++K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + IP ++  MR+   +  K  ++ E++ D  +
Sbjct: 111 KAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFE 148

to top

>CHMP3_XENTR (Q5BKM3) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 219

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 23/98 (23%), Positives = 50/98 (51%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+G   A  ++AK+ + ++  + K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + IP +Q  MRD   +  K  ++ E++ D  +
Sbjct: 111 KAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFE 148

to top

>CHMP3_XENLA (Q6NRM7) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 219

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 51/98 (52%)
 Frame = -1

Query: 638 AKQGQMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAM 459
           AK+G   A  ++AK+ ++++  + K YA K+ +  V + ++   +   +  +++  T+ M
Sbjct: 51  AKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVM 110

Query: 458 SQMNRQMNIPALQKIMRDFEMQNEKMEMVSEVMGDAID 345
             M   + +P +Q  MR+   +  K  ++ E++ D  +
Sbjct: 111 KAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFE 148

to top

>DID2_YEAST (P69771) Vacuolar protein sorting protein 46 (Charged|
           multivesicular body protein 1) (DOA4-independent
           degradation protein 2) (Fifty two inhibitor 1)
          Length = 204

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 30/116 (25%), Positives = 58/116 (50%)
 Frame = -1

Query: 611 KVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMSQMNRQMNI 432
           ++ A + IR +++  +   L S++  V+ R+QT  + + +  +M  V K M +  + MN+
Sbjct: 53  RIYASNAIRKKNERLQLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNL 112

Query: 431 PALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXELVSQVLDEIGIDI 264
             +  IM  FE Q E ++    V  D   ++           EL+S+V DE G+++
Sbjct: 113 QQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMEL 168

to top

>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 215

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
 Frame = -1

Query: 611 KVMAKDXIRTRHQITKFY-ALKSQLQGVSLRIQTLKSTQAMGEAMKGV---TKAMSQMNR 444
           K+MAK+ ++ +  + K    ++  +  +   I TL++     E MK +    KAM Q++ 
Sbjct: 53  KLMAKNALKKKKNLEKQQETVQGSIDSLQTSINTLETANLNLETMKAMQEGAKAMKQIHG 112

Query: 443 QMNIPALQKIMRD----FEMQNEKMEMVSEVMGDAIDD 342
            MNI  + KIM +      +  E  E +S    +A DD
Sbjct: 113 NMNIDKVDKIMDETRDQVALSEEVSEAISRPYANAYDD 150

to top

>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/77 (23%), Positives = 39/77 (50%)
 Frame = -1

Query: 590 IRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMSQMNRQMNIPALQKIM 411
           ++  +QI       + ++G +L ++T+K       AMK   +AM Q++ + ++  ++  M
Sbjct: 75  MKIENQIDSLETQLTSIEGANLNLETMK-------AMKQGAQAMKQIHGEYDVDKVENTM 127

Query: 410 RDFEMQNEKMEMVSEVM 360
            D   Q E  + +SE +
Sbjct: 128 DDIREQVELADEISEAI 144

to top

>MAD13_ORYSA (Q2QW53) MADS-box transcription factor 13 (OsMADS13) (RMADS206)|
          Length = 270

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -1

Query: 626 QMGAVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAM-KGVTKAMSQM 450
           ++ A +   ++  + RHQI         L G ++   +LK  + +   + KG++K  ++ 
Sbjct: 86  EVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARK 145

Query: 449 NRQMNIPALQKIMRDFEMQNEKMEMVSEV 363
           N  +         R+ E+QN+ M++ +++
Sbjct: 146 NELLASEINYMAKREIELQNDNMDLRTKI 174

to top

>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -1

Query: 590 IRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMSQMNRQMNIPALQKIM 411
           ++  +QI         ++G +L ++T+K       AMK   KAM Q++ + ++  ++  M
Sbjct: 76  LKVENQIETLETQLISIEGANLNLETMK-------AMKQGAKAMKQIHGEYDVDKVEDTM 128

Query: 410 RDFEMQNEKMEMVSEVM 360
            +   Q E  + +SE +
Sbjct: 129 DEIREQVELADEISEAI 145

to top

>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 542 LQGVSLRIQTLKSTQAMGEAMKGVTKAMSQMNRQMNIPALQKIMRDFEMQNEKMEMVSEV 363
           ++  +  IQTLK T+   +AMK   K M +  +Q+ I  ++ +    E   E    + E 
Sbjct: 89  MEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEA 148

Query: 362 M 360
           +
Sbjct: 149 L 149

to top

>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/85 (25%), Positives = 43/85 (50%)
 Frame = -1

Query: 617 AVKVMAKDXIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMSQMNRQM 438
           A KV        + +IT++   + QLQ  +  ++ LKST+   E  +   +   Q++   
Sbjct: 299 AAKVNTDAMRSAQEEITEY---RRQLQARTTELEALKSTKESLERQRSELEDRHQVDMAS 355

Query: 437 NIPALQKIMRDFEMQNEKMEMVSEV 363
              A+Q++  D E++N K EM +++
Sbjct: 356 YQDAIQQL--DNELRNTKWEMAAQL 378

to top

>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 542 LQGVSLRIQTLKSTQAMGEAMKGVTKAMSQMNRQMNIPALQKIMRDFEMQNEKMEMVSEV 363
           ++  +  IQTLK T+   EAMK   K M +  + + I  ++ +    E   E    V E 
Sbjct: 89  MEQANYTIQTLKDTKTTVEAMKIGAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEA 148

Query: 362 M 360
           +
Sbjct: 149 L 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,250,612
Number of Sequences: 219361
Number of extensions: 1321851
Number of successful extensions: 3399
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3384
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result