ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468334.1| Oryza sativa (japonica cultivar-group), mRNA 174 2e-40
2dbj|AK071602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5emb|AL355307.11| Human DNA sequence from clone RP11-484K19 on ch... 48 0.027
6gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosom... 42 1.6
7emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in ... 42 1.6
8gb|AC133192.3| Mus musculus BAC clone RP23-396C4 from 9, complet... 42 1.6
9gb|AC138741.7| Mus musculus chromosome 1, clone RP24-260D21, com... 40 6.5
10gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, comple... 40 6.5
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.5
12gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complet... 40 6.5
13gb|AC117623.7| Mus musculus chromosome 1, clone RP23-114L12, com... 40 6.5
14gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 6.5
15emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC... 40 6.5
16emb|AL513014.9| Mouse DNA sequence from clone RP23-461O24 on chr... 40 6.5
17gb|AC009292.11| Homo sapiens chromosome 15, clone RP11-34F13, co... 40 6.5
18emb|BX571968.10| Zebrafish DNA sequence from clone DKEY-27C4 in ... 40 6.5
19ref|XM_392775.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 6.5
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
21gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
22gb|AC093590.2| Homo sapiens BAC clone RP11-47G14 from 2, complet... 40 6.5
23gb|AC112688.10| Mus musculus chromosome 5, clone RP23-258C13, co... 40 6.5
24emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in... 40 6.5
25dbj|AK059080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
26dbj|AK058379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
27emb|Z68493.1|CEC33A12 Caenorhabditis elegans Cosmid C33A12, comp... 40 6.5
28emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chr... 40 6.5
29emb|AL669975.9| Mouse DNA sequence from clone RP23-218H24 on chr... 40 6.5 
>ref|XM_468334.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1747

 Score =  174 bits (88), Expect = 2e-40
 Identities = 223/269 (82%)
 Strand = Plus / Minus

                                                                        
Query: 196  ctatcatgcttttactgtggctaggtacttcncatgaatcgtcaatgctcctctacatgc 255
            |||||||||||||||||||| ||||||  || |||||||| ||| ||| ||||| |||||
Sbjct: 1505 ctatcatgcttttactgtggttaggtatctctcatgaatcttcagtgcccctctgcatgc 1446

                                                                        
Query: 256  cttttttgcatccagacttccagtgattanatncaatatcttgacgacatcgtcgagacc 315
            ||| |||||||||||||||||||||||    |  |||||||| ||||||||||| |||||
Sbjct: 1445 cttctttgcatccagacttccagtgatatcgtttaatatcttcacgacatcgtctagacc 1386

                                                                        
Query: 316  ttttgcctcccccagtaaccgcttgtttctagcctctatcacactagctacaacaaagac 375
            |||||| ||   ||||| | ||||||||||||||||||| |||||||| ||||  || ||
Sbjct: 1385 ttttgcatcagtcagtatctgcttgtttctagcctctatgacactagccacaatgaacac 1326

                                                                        
Query: 376  cgataaagggatctgctcctcttgcttggctgcctgcaattttttcctttcaaactttcc 435
             |||| ||| |||||||| || |  || || ||||| || ||||||  ||| || |||||
Sbjct: 1325 agatagaggtatctgctcttcctttttagccgcctgtaagtttttctgttcgaattttcc 1266

                                         
Query: 436  acactgttttagggtattttcatcttttg 464
            |||||| |||| || ||||||||||||||
Sbjct: 1265 acactgctttaaggcattttcatcttttg 1237
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>dbj|AK071602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102D17, full
            insert sequence
          Length = 1747

 Score =  174 bits (88), Expect = 2e-40
 Identities = 223/269 (82%)
 Strand = Plus / Minus

                                                                        
Query: 196  ctatcatgcttttactgtggctaggtacttcncatgaatcgtcaatgctcctctacatgc 255
            |||||||||||||||||||| ||||||  || |||||||| ||| ||| ||||| |||||
Sbjct: 1505 ctatcatgcttttactgtggttaggtatctctcatgaatcttcagtgcccctctgcatgc 1446

                                                                        
Query: 256  cttttttgcatccagacttccagtgattanatncaatatcttgacgacatcgtcgagacc 315
            ||| |||||||||||||||||||||||    |  |||||||| ||||||||||| |||||
Sbjct: 1445 cttctttgcatccagacttccagtgatatcgtttaatatcttcacgacatcgtctagacc 1386

                                                                        
Query: 316  ttttgcctcccccagtaaccgcttgtttctagcctctatcacactagctacaacaaagac 375
            |||||| ||   ||||| | ||||||||||||||||||| |||||||| ||||  || ||
Sbjct: 1385 ttttgcatcagtcagtatctgcttgtttctagcctctatgacactagccacaatgaacac 1326

                                                                        
Query: 376  cgataaagggatctgctcctcttgcttggctgcctgcaattttttcctttcaaactttcc 435
             |||| ||| |||||||| || |  || || ||||| || ||||||  ||| || |||||
Sbjct: 1325 agatagaggtatctgctcttcctttttagccgcctgtaagtttttctgttcgaattttcc 1266

                                         
Query: 436  acactgttttagggtattttcatcttttg 464
            |||||| |||| || ||||||||||||||
Sbjct: 1265 acactgctttaaggcattttcatcttttg 1237
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 136/166 (81%)
 Strand = Plus / Minus

                                                                            
Query: 299      acgacatcgtcgagaccttttgcctcccccagtaaccgcttgtttctagcctctatcaca 358
                ||||||||||| ||||||||||| ||   ||||| | ||||||||||||||||||| |||
Sbjct: 34676720 acgacatcgtctagaccttttgcatcagtcagtatctgcttgtttctagcctctatgaca 34676661

                                                                            
Query: 359      ctagctacaacaaagaccgataaagggatctgctcctcttgcttggctgcctgcaatttt 418
                ||||| ||||  || || |||| ||| |||||||| || |  || || ||||| || |||
Sbjct: 34676660 ctagccacaatgaacacagatagaggtatctgctcttcctttttagccgcctgtaagttt 34676601

                                                              
Query: 419      ttcctttcaaactttccacactgttttagggtattttcatcttttg 464
                |||  ||| || ||||||||||| |||| || ||||||||||||||
Sbjct: 34676600 ttctgttcgaattttccacactgctttaaggcattttcatcttttg 34676555



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                            
Query: 207      ttactgtggctaggtacttcncatgaatcgtcaatgctcctctacatgccttttttgcat 266
                ||||||||| ||||||  || |||||||| ||| ||| ||||| |||||||| |||||||
Sbjct: 34676913 ttactgtggttaggtatctctcatgaatcttcagtgcccctctgcatgccttctttgcat 34676854

                                
Query: 267      ccagacttccagtgat 282
                ||||||||||||||||
Sbjct: 34676853 ccagacttccagtgat 34676838
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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E04
          Length = 94096

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 136/166 (81%)
 Strand = Plus / Minus

                                                                         
Query: 299   acgacatcgtcgagaccttttgcctcccccagtaaccgcttgtttctagcctctatcaca 358
             ||||||||||| ||||||||||| ||   ||||| | ||||||||||||||||||| |||
Sbjct: 33671 acgacatcgtctagaccttttgcatcagtcagtatctgcttgtttctagcctctatgaca 33612

                                                                         
Query: 359   ctagctacaacaaagaccgataaagggatctgctcctcttgcttggctgcctgcaatttt 418
             ||||| ||||  || || |||| ||| |||||||| || |  || || ||||| || |||
Sbjct: 33611 ctagccacaatgaacacagatagaggtatctgctcttcctttttagccgcctgtaagttt 33552

                                                           
Query: 419   ttcctttcaaactttccacactgttttagggtattttcatcttttg 464
             |||  ||| || ||||||||||| |||| || ||||||||||||||
Sbjct: 33551 ttctgttcgaattttccacactgctttaaggcattttcatcttttg 33506



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 207   ttactgtggctaggtacttcncatgaatcgtcaatgctcctctacatgccttttttgcat 266
             ||||||||| ||||||  || |||||||| ||| ||| ||||| |||||||| |||||||
Sbjct: 33864 ttactgtggttaggtatctctcatgaatcttcagtgcccctctgcatgccttctttgcat 33805

                             
Query: 267   ccagacttccagtgat 282
             ||||||||||||||||
Sbjct: 33804 ccagacttccagtgat 33789
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>emb|AL355307.11| Human DNA sequence from clone RP11-484K19 on chromosome 6, complete
             sequence
          Length = 40699

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 449   gtattttcatcttttgcattttgg 472
             ||||||||||||||||||||||||
Sbjct: 13597 gtattttcatcttttgcattttgg 13574
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>gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosome 9, complete sequence
          Length = 179156

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 414   attttttcctttcaaactttc 434
             |||||||||||||||||||||
Sbjct: 42397 attttttcctttcaaactttc 42417
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>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8,
             complete sequence
          Length = 272840

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 450   tattttcatcttttgcatttt 470
             |||||||||||||||||||||
Sbjct: 49070 tattttcatcttttgcatttt 49090
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>gb|AC133192.3| Mus musculus BAC clone RP23-396C4 from 9, complete sequence
          Length = 197959

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 414   attttttcctttcaaactttc 434
             |||||||||||||||||||||
Sbjct: 11729 attttttcctttcaaactttc 11709
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>gb|AC138741.7| Mus musculus chromosome 1, clone RP24-260D21, complete sequence
          Length = 161846

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   ttttagggtattttcatctt 461
             ||||||||||||||||||||
Sbjct: 40975 ttttagggtattttcatctt 40994
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>gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, complete sequence
          Length = 195926

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 122    tttctccggtaaaacaaaagagac 145
              |||||| |||||||||||||||||
Sbjct: 181806 tttctcgggtaaaacaaaagagac 181783
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 454     ttcatcttttgcattttggt 473
               ||||||||||||||||||||
Sbjct: 7884998 ttcatcttttgcattttggt 7884979
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>gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complete sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 452    ttttcatcttttgcattttggtgg 475
              ||||||||||| ||||||||||||
Sbjct: 150993 ttttcatctttagcattttggtgg 151016
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>gb|AC117623.7| Mus musculus chromosome 1, clone RP23-114L12, complete sequence
          Length = 211821

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   ttttagggtattttcatctt 461
             ||||||||||||||||||||
Sbjct: 20600 ttttagggtattttcatctt 20581
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    attttttcctttcaaacttt 433
              ||||||||||||||||||||
Sbjct: 773542 attttttcctttcaaacttt 773523
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>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project)
          Length = 103534

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   ctgcctgcaattttttcctt 424
             ||||||||||||||||||||
Sbjct: 34846 ctgcctgcaattttttcctt 34827
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>emb|AL513014.9| Mouse DNA sequence from clone RP23-461O24 on chromosome 13 Contains the
             5' end of the gene for a novel protein similar to C6orf32
             (KIAA0386, DIFF48), complete sequence
          Length = 80460

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 421   cctttcaaactttccacactgttt 444
             |||| |||||||||||||||||||
Sbjct: 71626 ccttgcaaactttccacactgttt 71603
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>gb|AC009292.11| Homo sapiens chromosome 15, clone RP11-34F13, complete sequence
          Length = 182855

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 412   caattttttcctttcaaactttcc 435
             ||||||||| ||||||||||||||
Sbjct: 65170 caatttttttctttcaaactttcc 65147
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>emb|BX571968.10| Zebrafish DNA sequence from clone DKEY-27C4 in linkage group 23, complete
              sequence
          Length = 225376

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 440    tgttttagggtattttcatctttt 463
              |||||||||||||||||| |||||
Sbjct: 173352 tgttttagggtattttcaactttt 173329
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>ref|XM_392775.2| PREDICTED: Apis mellifera similar to ENSANGP00000021158 (LOC409252),
            mRNA
          Length = 3537

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  tattttcatcttttgcattt 469
            ||||||||||||||||||||
Sbjct: 1690 tattttcatcttttgcattt 1671
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 454     ttcatcttttgcattttggt 473
               ||||||||||||||||||||
Sbjct: 7882833 ttcatcttttgcattttggt 7882814
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>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0030J04, complete sequence
          Length = 153431

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   ttcatcttttgcattttggt 473
             ||||||||||||||||||||
Sbjct: 70596 ttcatcttttgcattttggt 70577
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>gb|AC093590.2| Homo sapiens BAC clone RP11-47G14 from 2, complete sequence
          Length = 126965

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    ttttttcctttcaaactttc 434
              ||||||||||||||||||||
Sbjct: 100857 ttttttcctttcaaactttc 100838
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>gb|AC112688.10| Mus musculus chromosome 5, clone RP23-258C13, complete sequence
          Length = 181175

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ctagcctctatcacactagc 363
             ||||||||||||||||||||
Sbjct: 74942 ctagcctctatcacactagc 74961
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>emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in linkage group 18,
             complete sequence
          Length = 169628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    aaaaaattacagaacacata 82
             ||||||||||||||||||||
Sbjct: 61904 aaaaaattacagaacacata 61885
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>dbj|AK059080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A10, full
           insert sequence
          Length = 315

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 454 ttcatcttttgcattttggt 473
           ||||||||||||||||||||
Sbjct: 110 ttcatcttttgcattttggt 91
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>dbj|AK058379.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-H02, full
            insert sequence
          Length = 1235

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  ttcatcttttgcattttggt 473
            ||||||||||||||||||||
Sbjct: 1030 ttcatcttttgcattttggt 1011
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>emb|Z68493.1|CEC33A12 Caenorhabditis elegans Cosmid C33A12, complete sequence
          Length = 42297

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  ttttgcatccagacttccag 278
            ||||||||||||||||||||
Sbjct: 9856 ttttgcatccagacttccag 9875
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>emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chromosome X, complete
             sequence
          Length = 132296

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ttacagaacacatacacata 88
             ||||||||||||||||||||
Sbjct: 11281 ttacagaacacatacacata 11262
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>emb|AL669975.9| Mouse DNA sequence from clone RP23-218H24 on chromosome X, complete
             sequence
          Length = 230634

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   gtcgagaccttttgcctcccccag 330
             |||| |||||||||||||||||||
Sbjct: 10425 gtcgtgaccttttgcctcccccag 10448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,826,329
Number of Sequences: 3902068
Number of extensions: 4826329
Number of successful extensions: 95703
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95546
Number of HSP's gapped (non-prelim): 155
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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