ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-as... 33 0.73
2ODPA_KLULA (O13366) Pyruvate dehydrogenase E1 component alpha su... 32 1.6
3CABL1_HUMAN (Q8TDN4) CDK5 and ABL1 enzyme substrate 1 (Interacto... 31 3.6
4KR171_HUMAN (Q9BYP8) Keratin-associated protein 17-1 (Keratin as... 31 3.6
5IGHA1_HUMAN (P01876) Ig alpha-1 chain C region 30 4.7
6NU2M_APILI (P34849) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 6.2

>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated|
           protein 5.10) (Ultrahigh sulfur keratin-associated
           protein 5.10)
          Length = 202

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 98  CNSCQPCNCQPWCAHCCFVTC 36
           CN C+PC C   C  CC  +C
Sbjct: 142 CNCCKPCCCSSGCGSCCQSSC 162



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>ODPA_KLULA (O13366) Pyruvate dehydrogenase E1 component alpha subunit,|
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
          Length = 412

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +1

Query: 292 LLGNSTSVRTIHLYSRNF*KDE*AAIQTYGDGNPGDEILVQAVVVSTGNEGCPQHVCDLK 471
           ++G S+S+R +    RNF K+  A  Q   +  PGD+ LVQ  +  T  EG    V +L 
Sbjct: 10  VVGKSSSLRLV----RNFSKNVRALSQVADETKPGDDDLVQIDLPETSFEGYLLDVPELS 65

Query: 472 Y 474
           Y
Sbjct: 66  Y 66



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>CABL1_HUMAN (Q8TDN4) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)|
           (Ik3-1)
          Length = 633

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/95 (26%), Positives = 44/95 (46%)
 Frame = +3

Query: 111 NGLAFTKKKKNDQKFASPSAVIQVPKGSFLGEPLDANGSGHPRQANFFCARGRSSLPPVS 290
           +G A  ++ + D  F S    +QVP  +FLG     +GSG   + N F       + P++
Sbjct: 200 SGAAGQEELEEDDAFIS----VQVPAAAFLGSGTPGSGSGSRGRLNSF----TQGILPIA 251

Query: 291 FTWQFYIRKNYSSIQPEFLEGRVSSNTDIRRWQPR 395
           F+      +NY S++     G  S+   ++R + R
Sbjct: 252 FSRP--TSQNYCSLEQPGQGGSTSAFEQLQRSRRR 284



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>KR171_HUMAN (Q9BYP8) Keratin-associated protein 17-1 (Keratin associated|
          protein 16.1)
          Length = 105

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 95 NSCQPCNCQPWCAHCCFVTC 36
          N C+ C CQP C  CC   C
Sbjct: 17 NCCEECCCQPGCCGCCGSCC 36



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>IGHA1_HUMAN (P01876) Ig alpha-1 chain C region|
          Length = 353

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = -3

Query: 608 FPRSTFGSGLVYQTGSPNGFCLSFRATRCLTSC*RHQSIFCCHTEYLRSQTC*GQPSFPV 429
           FP S   SG +Y T S     L+  AT+CL           CH ++  + +       PV
Sbjct: 53  FPPSQDASGDLYTTSSQ----LTLPATQCLAG-----KSVTCHVKHYTNPSQDVTVPCPV 103

Query: 428 ETTTACTRISSPGLPSPYVC 369
            +T      S+P  PSP  C
Sbjct: 104 PSTPPTPSPSTPPTPSPSCC 123



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>NU2M_APILI (P34849) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 333

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 555 WLLSFIPGYPMLNFMLTTSIYLLLSYRVFEITNVLRAAFIPSRDNNRLYQNFIA 394
           W+L  +    M++ ML    Y+++  RVF   N  +  FI  +DN  +Y ++ A
Sbjct: 267 WILFLL----MISSMLMIWNYIIILKRVFLKMNFYKNNFIDDKDNKYMYHSYFA 316


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,165,193
Number of Sequences: 219361
Number of extensions: 2209438
Number of successful extensions: 5762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5746
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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