ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene 100 2e-18
2emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid tra... 84 1e-13
3gb|U18127.1|HVU18127 Hordeum vulgare phospholipid transfer prote... 66 3e-08
4emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific l... 54 1e-04
5emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for ... 50 0.002
6emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA 50 0.002
7emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non sp... 50 0.002
8emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non sp... 42 0.42
9emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on ch... 40 1.7
10emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on ch... 40 1.7
11dbj|AK056395.1| Homo sapiens cDNA FLJ31833 fis, clone NT2RP6000130 40 1.7
12emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in l... 40 1.7
13gb|AC044817.5|AC044817 Homo sapiens, clone RP11-197P20, complete... 40 1.7
14gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, com... 40 1.7
15dbj|AP006306.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 1.7
16dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 1.7
17dbj|AP000070.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 1.7
18gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 38 6.6
19ref|XM_370021.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 6.6
20gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, comple... 38 6.6
21emb|BX649250.6| Zebrafish DNA sequence from clone DKEY-53B2 in l... 38 6.6
22gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, comple... 38 6.6
23gb|AC067817.10| Homo sapiens chromosome 8, clone RP11-723D22, co... 38 6.6

>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene
          Length = 1862

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 73/82 (89%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   aaataacctcaacgtactcagtgtctcaggatcgatagctgnnnnnnnnnggcagcaagg 117
            |||||||||||||||||||||||||||||||||||||||||         ||||||||||
Sbjct: 1454 aaataacctcaacgtactcagtgtctcaggatcgatagctg-gagctataggcagcaagg 1396

                                  
Query: 118  atgacagcaagtggtcgatcag 139
            ||||||||||||||||||||||
Sbjct: 1395 atgacagcaagtggtcgatcag 1374



 Score = 77.8 bits (39), Expect = 8e-12
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                   
Query: 1    cacatggagataatatatgagagcatttattcatatata 39
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 cacatggagataatatatgagagcatttattcatatata 1473



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>emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid transfer protein precursor
          Length = 691

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 58  aaataacctcaacgtactcagtgtctcaggatcgatagctgnnnnnnnnnggcagcaagg 117
           ||||||||||||||||||||| ||||||| |||||||||||         ||||||||||
Sbjct: 439 aaataacctcaacgtactcagcgtctcagcatcgatagctg-gagctataggcagcaagg 381

                                 
Query: 118 atgacagcaagtggtcgatcag 139
           ||||||||||||||||||||||
Sbjct: 380 atgacagcaagtggtcgatcag 359



 Score = 77.8 bits (39), Expect = 8e-12
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 1   cacatggagataatatatgagagcatttattcatatata 39
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cacatggagataatatatgagagcatttattcatatata 471



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>gb|U18127.1|HVU18127 Hordeum vulgare phospholipid transfer protein precursor gene,
           complete cds
          Length = 573

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 58  aaataacctcaacgtactcagtgtctcaggatcgatagctg 98
           ||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 510 aaataacctcaacgtactcagcgtctcagcatcgatagctg 470



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 6   ggagataatatatgagagcatttattcatatata 39
           ||||||||||||||||| ||||||||||||||||
Sbjct: 573 ggagataatatatgagatcatttattcatatata 540



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>emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific lipid transfer
           protein precursor (ltp9.2 gene)
          Length = 708

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 13  atatatgagagcatttattcatatata 39
           |||||||||||||||||||||||||||
Sbjct: 542 atatatgagagcatttattcatatata 516



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>emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for type 1 non-specific
           lipid transfer protein precursor (ltp9.2 gene)
          Length = 604

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 15  atatgagagcatttattcatatata 39
           |||||||||||||||||||||||||
Sbjct: 437 atatgagagcatttattcatatata 413



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>emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA
          Length = 705

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 15  atatgagagcatttattcatatata 39
           |||||||||||||||||||||||||
Sbjct: 498 atatgagagcatttattcatatata 474



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>emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non specific lipid transfer
            protein precursor
          Length = 2087

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 15   atatgagagcatttattcatatata 39
            |||||||||||||||||||||||||
Sbjct: 1733 atatgagagcatttattcatatata 1709



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>emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non specific lipid transfer
            protein precursor
          Length = 2122

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   atatgagagcatttattcata 35
            |||||||||||||||||||||
Sbjct: 1745 atatgagagcatttattcata 1725



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>emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on chromosome 1 Contains the 3'
              end of a novel gene, complete sequence
          Length = 128843

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      cacatggagataatatatga 20
              ||||||||||||||||||||
Sbjct: 114026 cacatggagataatatatga 114007



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>emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on chromosome 9 Contains part
             of the ASTN2 gene for astrotactin2 (KIAA0634), and a CpG
             island, complete sequence
          Length = 162575

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tggagataatatatgagagc 24
             ||||||||||||||||||||
Sbjct: 31942 tggagataatatatgagagc 31961



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>dbj|AK056395.1| Homo sapiens cDNA FLJ31833 fis, clone NT2RP6000130
          Length = 3692

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  agcaaggatgacagcaagtg 130
            ||||||||||||||||||||
Sbjct: 1826 agcaaggatgacagcaagtg 1807



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>emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in linkage group 2,
             complete sequence
          Length = 146298

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tggagataatatatgagagc 24
             ||||||||||||||||||||
Sbjct: 85666 tggagataatatatgagagc 85685



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>gb|AC044817.5|AC044817 Homo sapiens, clone RP11-197P20, complete sequence
          Length = 109398

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    agcaaggatgacagcaagtg 130
              ||||||||||||||||||||
Sbjct: 100675 agcaaggatgacagcaagtg 100694



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>gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, complete sequence
          Length = 206852

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   agcaaggatgacagcaagtg 130
             ||||||||||||||||||||
Sbjct: 90670 agcaaggatgacagcaagtg 90651



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>dbj|AP006306.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-591J4, complete
             sequence
          Length = 211750

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   agcaaggatgacagcaagtg 130
             ||||||||||||||||||||
Sbjct: 90149 agcaaggatgacagcaagtg 90168



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>dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53I21, complete
              sequence
          Length = 156583

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    agcaaggatgacagcaagtg 130
              ||||||||||||||||||||
Sbjct: 142238 agcaaggatgacagcaagtg 142257



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>dbj|AP000070.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 6/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   agcaaggatgacagcaagtg 130
             ||||||||||||||||||||
Sbjct: 19820 agcaaggatgacagcaagtg 19801



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>gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OABb-238A1, complete
            sequence
          Length = 168798

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   tgagagcatttattcatat 36
            |||||||||||||||||||
Sbjct: 8610 tgagagcatttattcatat 8628



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>ref|XM_370021.1| Magnaporthe grisea 70-15 hypothetical protein (MG06536.4) partial
            mRNA
          Length = 2145

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 110  cagcaaggatgacagcaag 128
            |||||||||||||||||||
Sbjct: 1206 cagcaaggatgacagcaag 1224



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>gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, complete sequence
          Length = 155481

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ataatatatgagagcattt 28
              |||||||||||||||||||
Sbjct: 142699 ataatatatgagagcattt 142717



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>emb|BX649250.6| Zebrafish DNA sequence from clone DKEY-53B2 in linkage group 20,
             complete sequence
          Length = 165729

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    gagagcatttattcatata 37
             |||||||||||||||||||
Sbjct: 79657 gagagcatttattcatata 79639



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>gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, complete sequence
          Length = 205200

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 13    atatatgagagcatttattcatatata 39
             ||||||||||| || ||||||||||||
Sbjct: 92806 atatatgagagaatatattcatatata 92780



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>gb|AC067817.10| Homo sapiens chromosome 8, clone RP11-723D22, complete sequence
          Length = 172678

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     agataatatatgagagcat 26
             |||||||||||||||||||
Sbjct: 98383 agataatatatgagagcat 98401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 830,540
Number of Sequences: 3902068
Number of extensions: 830540
Number of successful extensions: 56429
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56386
Number of HSP's gapped (non-prelim): 43
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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