| Clone Name | rbags1f20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene Length = 1862 Score = 99.6 bits (50), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 58 aaataacctcaacgtactcagtgtctcaggatcgatagctgnnnnnnnnnggcagcaagg 117 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1454 aaataacctcaacgtactcagtgtctcaggatcgatagctg-gagctataggcagcaagg 1396 Query: 118 atgacagcaagtggtcgatcag 139 |||||||||||||||||||||| Sbjct: 1395 atgacagcaagtggtcgatcag 1374 Score = 77.8 bits (39), Expect = 8e-12 Identities = 39/39 (100%) Strand = Plus / Minus Query: 1 cacatggagataatatatgagagcatttattcatatata 39 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1511 cacatggagataatatatgagagcatttattcatatata 1473
>emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid transfer protein precursor Length = 691 Score = 83.8 bits (42), Expect = 1e-13 Identities = 71/82 (86%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 58 aaataacctcaacgtactcagtgtctcaggatcgatagctgnnnnnnnnnggcagcaagg 117 ||||||||||||||||||||| ||||||| ||||||||||| |||||||||| Sbjct: 439 aaataacctcaacgtactcagcgtctcagcatcgatagctg-gagctataggcagcaagg 381 Query: 118 atgacagcaagtggtcgatcag 139 |||||||||||||||||||||| Sbjct: 380 atgacagcaagtggtcgatcag 359 Score = 77.8 bits (39), Expect = 8e-12 Identities = 39/39 (100%) Strand = Plus / Minus Query: 1 cacatggagataatatatgagagcatttattcatatata 39 ||||||||||||||||||||||||||||||||||||||| Sbjct: 509 cacatggagataatatatgagagcatttattcatatata 471
>gb|U18127.1|HVU18127 Hordeum vulgare phospholipid transfer protein precursor gene, complete cds Length = 573 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 58 aaataacctcaacgtactcagtgtctcaggatcgatagctg 98 ||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 510 aaataacctcaacgtactcagcgtctcagcatcgatagctg 470 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 6 ggagataatatatgagagcatttattcatatata 39 ||||||||||||||||| |||||||||||||||| Sbjct: 573 ggagataatatatgagatcatttattcatatata 540
>emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific lipid transfer protein precursor (ltp9.2 gene) Length = 708 Score = 54.0 bits (27), Expect = 1e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 13 atatatgagagcatttattcatatata 39 ||||||||||||||||||||||||||| Sbjct: 542 atatatgagagcatttattcatatata 516
>emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for type 1 non-specific lipid transfer protein precursor (ltp9.2 gene) Length = 604 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 15 atatgagagcatttattcatatata 39 ||||||||||||||||||||||||| Sbjct: 437 atatgagagcatttattcatatata 413
>emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA Length = 705 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 15 atatgagagcatttattcatatata 39 ||||||||||||||||||||||||| Sbjct: 498 atatgagagcatttattcatatata 474
>emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non specific lipid transfer protein precursor Length = 2087 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 15 atatgagagcatttattcatatata 39 ||||||||||||||||||||||||| Sbjct: 1733 atatgagagcatttattcatatata 1709
>emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non specific lipid transfer protein precursor Length = 2122 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 atatgagagcatttattcata 35 ||||||||||||||||||||| Sbjct: 1745 atatgagagcatttattcata 1725
>emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 128843 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cacatggagataatatatga 20 |||||||||||||||||||| Sbjct: 114026 cacatggagataatatatga 114007
>emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on chromosome 9 Contains part of the ASTN2 gene for astrotactin2 (KIAA0634), and a CpG island, complete sequence Length = 162575 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tggagataatatatgagagc 24 |||||||||||||||||||| Sbjct: 31942 tggagataatatatgagagc 31961
>dbj|AK056395.1| Homo sapiens cDNA FLJ31833 fis, clone NT2RP6000130 Length = 3692 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 agcaaggatgacagcaagtg 130 |||||||||||||||||||| Sbjct: 1826 agcaaggatgacagcaagtg 1807
>emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in linkage group 2, complete sequence Length = 146298 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tggagataatatatgagagc 24 |||||||||||||||||||| Sbjct: 85666 tggagataatatatgagagc 85685
>gb|AC044817.5|AC044817 Homo sapiens, clone RP11-197P20, complete sequence Length = 109398 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 agcaaggatgacagcaagtg 130 |||||||||||||||||||| Sbjct: 100675 agcaaggatgacagcaagtg 100694
>gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, complete sequence Length = 206852 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 agcaaggatgacagcaagtg 130 |||||||||||||||||||| Sbjct: 90670 agcaaggatgacagcaagtg 90651
>dbj|AP006306.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-591J4, complete sequence Length = 211750 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 agcaaggatgacagcaagtg 130 |||||||||||||||||||| Sbjct: 90149 agcaaggatgacagcaagtg 90168
>dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53I21, complete sequence Length = 156583 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 agcaaggatgacagcaagtg 130 |||||||||||||||||||| Sbjct: 142238 agcaaggatgacagcaagtg 142257
>dbj|AP000070.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 6/19 Length = 100000 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 agcaaggatgacagcaagtg 130 |||||||||||||||||||| Sbjct: 19820 agcaaggatgacagcaagtg 19801
>gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OABb-238A1, complete sequence Length = 168798 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 tgagagcatttattcatat 36 ||||||||||||||||||| Sbjct: 8610 tgagagcatttattcatat 8628
>ref|XM_370021.1| Magnaporthe grisea 70-15 hypothetical protein (MG06536.4) partial mRNA Length = 2145 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 cagcaaggatgacagcaag 128 ||||||||||||||||||| Sbjct: 1206 cagcaaggatgacagcaag 1224
>gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, complete sequence Length = 155481 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 ataatatatgagagcattt 28 ||||||||||||||||||| Sbjct: 142699 ataatatatgagagcattt 142717
>emb|BX649250.6| Zebrafish DNA sequence from clone DKEY-53B2 in linkage group 20, complete sequence Length = 165729 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 gagagcatttattcatata 37 ||||||||||||||||||| Sbjct: 79657 gagagcatttattcatata 79639
>gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, complete sequence Length = 205200 Score = 38.2 bits (19), Expect = 6.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 13 atatatgagagcatttattcatatata 39 ||||||||||| || |||||||||||| Sbjct: 92806 atatatgagagaatatattcatatata 92780
>gb|AC067817.10| Homo sapiens chromosome 8, clone RP11-723D22, complete sequence Length = 172678 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 agataatatatgagagcat 26 ||||||||||||||||||| Sbjct: 98383 agataatatatgagagcat 98401 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 830,540 Number of Sequences: 3902068 Number of extensions: 830540 Number of successful extensions: 56429 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56386 Number of HSP's gapped (non-prelim): 43 length of query: 139 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 118 effective length of database: 17,151,101,840 effective search space: 2023830017120 effective search space used: 2023830017120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)