ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
2dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
3dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
4gb|AY109589.1| Zea mays CL7475_1 mRNA sequence 101 3e-18
5gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, co... 48 0.041
6gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, comp... 44 0.64
7gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete... 44 0.64
8gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, com... 44 0.64
9gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, comp... 44 0.64
10dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 44 0.64
11gb|BC056810.1| Danio rerio zgc:63733, mRNA (cDNA clone MGC:63733... 42 2.5
12emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on ch... 42 2.5
13ref|NM_200619.1| Danio rerio zgc:63733 (zgc:63733), mRNA 42 2.5
14gb|AC171900.2| Capitella capitata clone JGIBGZA-37N16, complete ... 42 2.5
15gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 42 2.5
16gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, compl... 42 2.5
17gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 42 2.5
18emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 42 2.5
19ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1... 42 2.5
20ref|NM_016173.3| Homo sapiens HemK methyltransferase family memb... 42 2.5
21gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137... 42 2.5
22gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complet... 42 2.5
23emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 42 2.5
24gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, comple... 42 2.5
25emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 42 2.5
26gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA... 42 2.5
27emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in ... 42 2.5
28emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (... 42 2.5
29emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 42 2.5
30emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on ch... 42 2.5
31emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 42 2.5
32dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 42 2.5
33ref|NM_186230.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.9
34gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, com... 40 9.9
35gb|AE002123.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 40 9.9
36gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, co... 40 9.9
37ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein... 40 9.9
38emb|AJ865241.1| Cocos nucifera microsatellite DNA, clone CnCir 146 40 9.9
39gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, comple... 40 9.9
40gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 9.9
41gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se... 40 9.9
42emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in ... 40 9.9
43dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, c... 40 9.9
44dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, c... 40 9.9
45gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 9.9
46gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, comp... 40 9.9
47gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Canc... 40 9.9
48ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.9
49ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.9
50ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.9
51gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromo... 40 9.9
52dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
53gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Canc... 40 9.9
54gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 40 9.9
55gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y... 40 9.9
56gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complet... 40 9.9
57gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y... 40 9.9
58dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
59dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clo... 40 9.9
60emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chro... 40 9.9
61emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15 40 9.9
62emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chro... 40 9.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                            
Query: 345      tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 404
                ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 38047335 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 38047276

                                                                            
Query: 405      gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 462
                ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 38047275 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 38047216

                                                              
Query: 463      ttagagcctgagccacctagatgcaagctataaactgaaggataaa 508
                ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 38047215 ttagagccttaaccacctagatgcaagctataaactggaagataaa 38047170



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                            
Query: 219      tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 276
                |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 38047468 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 38047409

                                                         
Query: 277      acccaagacaataaaa-atatgcctgggtccattggggtta 316
                |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 38047408 acccaagacaataaaatatatctatgggtccattggggtta 38047368



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 122      agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 176
                |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 38047596 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 38047542
to top
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                          
Query: 345    tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 404
              ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 128279 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 128220

                                                                          
Query: 405    gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 462
              ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 128219 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 128160

                                                            
Query: 463    ttagagcctgagccacctagatgcaagctataaactgaaggataaa 508
              ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 128159 ttagagccttaaccacctagatgcaagctataaactggaagataaa 128114



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                          
Query: 219    tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 276
              |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 128412 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 128353

                                                       
Query: 277    acccaagacaataaaa-atatgcctgggtccattggggtta 316
              |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 128352 acccaagacaataaaatatatctatgggtccattggggtta 128312



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                     
Query: 122    agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 176
              |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 128540 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 128486
to top
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                         
Query: 345   tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 404
             ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 15369 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 15310

                                                                         
Query: 405   gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 462
             ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 15309 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 15250

                                                           
Query: 463   ttagagcctgagccacctagatgcaagctataaactgaaggataaa 508
             ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 15249 ttagagccttaaccacctagatgcaagctataaactggaagataaa 15204



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                         
Query: 219   tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 276
             |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 15502 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 15443

                                                      
Query: 277   acccaagacaataaaa-atatgcctgggtccattggggtta 316
             |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 15442 acccaagacaataaaatatatctatgggtccattggggtta 15402



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 122   agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 176
             |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 15630 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 15576
to top
>gb|AY109589.1| Zea mays CL7475_1 mRNA sequence
          Length = 1284

 Score =  101 bits (51), Expect = 3e-18
 Identities = 100/117 (85%), Gaps = 2/117 (1%)
 Strand = Plus / Plus

                                                                       
Query: 387 caggaggtagtgccaagtgccaaaaactaacattagcactcct--gaacctgtctctgat 444
           ||||||||||||||||| ||      | |||||||||||| ||  |||||||| ||||||
Sbjct: 441 caggaggtagtgccaagggctnnnnncaaacattagcactactctgaacctgtgtctgat 500

                                                                    
Query: 445 gaggggcacaggctctccttagagcctgagccacctagatgcaagctataaactgaa 501
            ||||||||||||||||||||||||||   ||||||||||||||||||| |||||||
Sbjct: 501 taggggcacaggctctccttagagccttgaccacctagatgcaagctatcaactgaa 557
to top
>gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, complete sequence
          Length = 122302

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 607   gtggtggggaggcgtgtgtgtgagtatg 634
             ||||||||||||||||||||| ||||||
Sbjct: 79207 gtggtggggaggcgtgtgtgttagtatg 79234



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 607   gtggtggggaggcgtgtgtgtgagtatg 634
             ||||||||||||||||||||| ||||||
Sbjct: 79113 gtggtggggaggcgtgtgtgttagtatg 79140
to top
>gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, complete sequence
          Length = 227600

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                   
Query: 591   tgtgaagttgctggtggtggtggggaggcgtgtgtgtg 628
             ||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 42336 tgtgaagttgctgctgg-ggtggggaggcttgtgtgtg 42372
to top
>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence
          Length = 191191

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 592   gtgaagttgctggtggtggtgg 613
             ||||||||||||||||||||||
Sbjct: 75306 gtgaagttgctggtggtggtgg 75327
to top
>gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, complete sequence
          Length = 157284

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                    
Query: 591    tgtgaagttgctggtggtggtggggaggcgtgtgtgtg 628
              ||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 138635 tgtgaagttgctgctgg-ggtggggaggcttgtgtgtg 138671
to top
>gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, complete sequence
          Length = 143480

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 233   atggtaatgacattggggaaga 254
             ||||||||||||||||||||||
Sbjct: 55963 atggtaatgacattggggaaga 55942
to top
>dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1252A6, complete
             sequence
          Length = 149431

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 233   atggtaatgacattggggaaga 254
             ||||||||||||||||||||||
Sbjct: 30839 atggtaatgacattggggaaga 30860
to top
>gb|BC056810.1| Danio rerio zgc:63733, mRNA (cDNA clone MGC:63733 IMAGE:2639664),
           complete cds
          Length = 2648

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 tcactgtgaccgataatatta 163
           |||||||||||||||||||||
Sbjct: 581 tcactgtgaccgataatatta 601
to top
>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the
             5' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB) and a CpG island, complete
             sequence
          Length = 182914

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   aactaacattagcactcctga 431
             |||||||||||||||||||||
Sbjct: 97530 aactaacattagcactcctga 97510
to top
>ref|NM_200619.1| Danio rerio zgc:63733 (zgc:63733), mRNA
          Length = 2648

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 tcactgtgaccgataatatta 163
           |||||||||||||||||||||
Sbjct: 581 tcactgtgaccgataatatta 601
to top
>gb|AC171900.2| Capitella capitata clone JGIBGZA-37N16, complete sequence
          Length = 36254

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    gattatagattgacagnaatattt 69
             |||||||||||||||| |||||||
Sbjct: 14257 gattatagattgacagtaatattt 14280
to top
>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 589    gttgtgaagttgctggtggtg 609
              |||||||||||||||||||||
Sbjct: 106661 gttgtgaagttgctggtggtg 106641
to top
>gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, complete sequence
          Length = 192324

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 599    tgctggtggtggtggggaggc 619
              |||||||||||||||||||||
Sbjct: 130564 tgctggtggtggtggggaggc 130584
to top
>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 645   aagttatagactggtcagctg 665
             |||||||||||||||||||||
Sbjct: 57427 aagttatagactggtcagctg 57447
to top
>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 589   gttgtgaagttgctggtggtg 609
             |||||||||||||||||||||
Sbjct: 86744 gttgtgaagttgctggtggtg 86724
to top
>ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1P1) on chromosome 22
          Length = 20254

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 589   gttgtgaagttgctggtggtg 609
             |||||||||||||||||||||
Sbjct: 12410 gttgtgaagttgctggtggtg 12430
to top
>ref|NM_016173.3| Homo sapiens HemK methyltransferase family member 1 (HEMK1), mRNA
          Length = 5862

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 599  tgctggtggtggtggggaggc 619
            |||||||||||||||||||||
Sbjct: 3853 tgctggtggtggtggggaggc 3833
to top
>gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137J4 map 15q21.3, complete
             sequence
          Length = 114149

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 598   ttgctggtggtggtggggagg 618
             |||||||||||||||||||||
Sbjct: 72338 ttgctggtggtggtggggagg 72318
to top
>gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complete sequence
          Length = 175345

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 669    aattttatttgctctagataa 689
              |||||||||||||||||||||
Sbjct: 128048 aattttatttgctctagataa 128068
to top
>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 660  cagctgtcaaattttatttgc 680
            |||||||||||||||||||||
Sbjct: 2974 cagctgtcaaattttatttgc 2994
to top
>gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, complete sequence
          Length = 198440

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 589   gttgtgaagttgctggtggtggtgg 613
             |||||||||||| ||||||||||||
Sbjct: 81945 gttgtgaagttggtggtggtggtgg 81969
to top
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     ctgataaaacagtaaagagtt 102
              |||||||||||||||||||||
Sbjct: 715595 ctgataaaacagtaaagagtt 715575
to top
>gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA, complete cds
          Length = 5737

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 599  tgctggtggtggtggggaggc 619
            |||||||||||||||||||||
Sbjct: 3778 tgctggtggtggtggggaggc 3758
to top
>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8,
             complete sequence
          Length = 217745

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   ataatattacattaaaaagca 175
             |||||||||||||||||||||
Sbjct: 10804 ataatattacattaaaaagca 10824
to top
>emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (from clone DKFZp686I1369)
          Length = 5778

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 599  tgctggtggtggtggggaggc 619
            |||||||||||||||||||||
Sbjct: 3991 tgctggtggtggtggggaggc 3971
to top
>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 589   gttgtgaagttgctggtggtg 609
             |||||||||||||||||||||
Sbjct: 96763 gttgtgaagttgctggtggtg 96743
to top
>emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on chromosome 3, complete
            sequence
          Length = 25067

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 599  tgctggtggtggtggggaggc 619
            |||||||||||||||||||||
Sbjct: 5296 tgctggtggtggtggggaggc 5316
to top
>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 589   gttgtgaagttgctggtggtg 609
             |||||||||||||||||||||
Sbjct: 81491 gttgtgaagttgctggtggtg 81511
to top
>dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c23H5
          Length = 37769

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 589   gttgtgaagttgctggtggtg 609
             |||||||||||||||||||||
Sbjct: 20191 gttgtgaagttgctggtggtg 20211
to top
>ref|NM_186230.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 581  aggatgttgttgtgaagttg 600
            ||||||||||||||||||||
Sbjct: 3257 aggatgttgttgtgaagttg 3276
to top
>gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, complete sequence
          Length = 109297

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 607   gtggtggggaggcgtgtgtg 626
             ||||||||||||||||||||
Sbjct: 69297 gtggtggggaggcgtgtgtg 69316
to top
>gb|AE002123.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 24 of 59 of the
             complete genome
          Length = 14499

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ctactttattattacaatca 145
             ||||||||||||||||||||
Sbjct: 11613 ctactttattattacaatca 11594
to top
>gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 667   caaattttatttgctctaga 686
             ||||||||||||||||||||
Sbjct: 46526 caaattttatttgctctaga 46507
to top
>ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.6k15.3480)
           partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 620 gtgtgtgtgagtatgcgtggaaat 643
           ||||||||| ||||||||||||||
Sbjct: 107 gtgtgtgtgtgtatgcgtggaaat 130
to top
>emb|AJ865241.1| Cocos nucifera microsatellite DNA, clone CnCir 146
          Length = 355

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 tcctggacctaaccatggta 238
           ||||||||||||||||||||
Sbjct: 204 tcctggacctaaccatggta 185
to top
>gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, complete sequence
          Length = 104859

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 278   cccaagacaataaaaatatgcctg 301
             ||||||||||||||||||| ||||
Sbjct: 50036 cccaagacaataaaaatatacctg 50059
to top
>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete
              sequence
          Length = 214125

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 637    tggaaatgaagttatagact 656
              ||||||||||||||||||||
Sbjct: 126448 tggaaatgaagttatagact 126467
to top
>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 599   tgctggtggtggtggggagg 618
             ||||||||||||||||||||
Sbjct: 13192 tgctggtggtggtggggagg 13173
to top
>emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in linkage group 21,
             complete sequence
          Length = 242772

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   tctgatgaggggcacaggct 458
             ||||||||||||||||||||
Sbjct: 54513 tctgatgaggggcacaggct 54494
to top
>dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, complete sequences
          Length = 171989

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 667    caaattttatttgctctaga 686
              ||||||||||||||||||||
Sbjct: 142180 caaattttatttgctctaga 142199
to top
>dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, complete sequences
          Length = 182507

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 667   caaattttatttgctctaga 686
             ||||||||||||||||||||
Sbjct: 42095 caaattttatttgctctaga 42114
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 667      caaattttatttgctctaga 686
                ||||||||||||||||||||
Sbjct: 22698182 caaattttatttgctctaga 22698163
to top
>gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, complete sequence
          Length = 201049

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    tttattattacaatcactgt 149
              ||||||||||||||||||||
Sbjct: 111113 tttattattacaatcactgt 111094
to top
>gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 173003

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 570    gaagttatcacaggatgttg 589
              ||||||||||||||||||||
Sbjct: 111350 gaagttatcacaggatgttg 111331
to top
>ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 1 (LOC440910), mRNA
          Length = 4157

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 589  gttgtgaagttgctggtggt 608
            ||||||||||||||||||||
Sbjct: 2556 gttgtgaagttgctggtggt 2537
to top
>ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
           variant 3 (LOC440910), mRNA
          Length = 439

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 589 gttgtgaagttgctggtggt 608
           ||||||||||||||||||||
Sbjct: 156 gttgtgaagttgctggtggt 137
to top
>ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 2 (LOC440910), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 589  gttgtgaagttgctggtggt 608
            ||||||||||||||||||||
Sbjct: 2898 gttgtgaagttgctggtggt 2879
to top
>gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromosome y, complete
              sequence
          Length = 179557

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 667    caaattttatttgctctaga 686
              ||||||||||||||||||||
Sbjct: 112249 caaattttatttgctctaga 112230
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 581     aggatgttgttgtgaagttg 600
               ||||||||||||||||||||
Sbjct: 1718687 aggatgttgttgtgaagttg 1718706
to top
>gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194925

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 570   gaagttatcacaggatgttg 589
             ||||||||||||||||||||
Sbjct: 36298 gaagttatcacaggatgttg 36279
to top
>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 589    gttgtgaagttgctggtggt 608
              ||||||||||||||||||||
Sbjct: 114007 gttgtgaagttgctggtggt 113988
to top
>gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence
          Length = 171449

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 667    caaattttatttgctctaga 686
              ||||||||||||||||||||
Sbjct: 108144 caaattttatttgctctaga 108163
to top
>gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complete sequence
          Length = 106499

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 705   tattagcatctgctaaatgc 724
             ||||||||||||||||||||
Sbjct: 52446 tattagcatctgctaaatgc 52465
to top
>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 667    caaattttatttgctctaga 686
              ||||||||||||||||||||
Sbjct: 141898 caaattttatttgctctaga 141917
to top
>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1606_D04
          Length = 92729

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 581   aggatgttgttgtgaagttg 600
             ||||||||||||||||||||
Sbjct: 60887 aggatgttgttgtgaagttg 60906
to top
>dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB1528A10, complete
             sequence
          Length = 34971

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 607   gtggtggggaggcgtgtgtg 626
             ||||||||||||||||||||
Sbjct: 20390 gtggtggggaggcgtgtgtg 20371
to top
>emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chromosome X, complete
              sequence
          Length = 208959

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    cacagcagtgttttggtatc 344
              ||||||||||||||||||||
Sbjct: 167958 cacagcagtgttttggtatc 167977
to top
>emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15
          Length = 2414

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  ctgaaggataaagaactgtt 516
            ||||||||||||||||||||
Sbjct: 2226 ctgaaggataaagaactgtt 2207
to top
>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete
              sequence
          Length = 191676

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 609    ggtggggaggcgtgtgtgtg 628
              ||||||||||||||||||||
Sbjct: 104336 ggtggggaggcgtgtgtgtg 104317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,615,818
Number of Sequences: 3902068
Number of extensions: 7615818
Number of successful extensions: 159465
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 159159
Number of HSP's gapped (non-prelim): 300
length of query: 724
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 701
effective length of database: 17,143,297,704
effective search space: 12017451690504
effective search space used: 12017451690504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top