ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1f05 |
|---|---|
| Clone Library Name | barley_pub |
>MCM6_DROPS (Q29JI9) DNA replication licensing factor Mcm6 (Minichromosome| maintenance 6 protein) Length = 815 Score = 55.5 bits (132), Expect = 2e-07 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Frame = -2 Query: 601 VIKKKLVITEEHFQRVTQALVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQNAQGAY 422 V KKK ++ E ++ ++ LV+ +R E + +G +GMK+ D++ WY+EQ Q Sbjct: 698 VQKKKFTLSFEDYKNLSTMLVLHMRGEEARCEVEGSD-SGMKRSDVVTWYLEQVADQ--I 754 Query: 421 SSTEEVKEEVKCIKAIIERLIQREGHLVVIDEGTAA--EGAAARSSEH-RILAVNPNYVI 251 S +E+ I+ +I+RLI + ++ + + +G A ++ +L V+PNYV+ Sbjct: 755 ESEDELISRKNLIEKLIDRLIYHDQVIIPLKTSNLSRIKGPAEEQVDNDPLLVVHPNYVV 814 Query: 250 D 248 D Sbjct: 815 D 815
>MCM6_DROME (Q9V461) DNA replication licensing factor Mcm6 (Minichromosome| maintenance 6 protein) (DmMCM6) Length = 817 Score = 51.2 bits (121), Expect = 3e-06 Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Frame = -2 Query: 682 DAPLDNDDEQPVQGDATAQD---GPDEPAE--VIKKKLVITEEHFQRVTQALVMRLRQHE 518 D + +D + G A D G D A V KKK ++ E ++ ++ LV+ +R E Sbjct: 667 DDGIQHDIDMENNGAAANVDENNGMDTSASGAVQKKKFTLSFEDYKNLSTMLVLHMRAEE 726 Query: 517 ESVKKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCIKAIIERLIQREGHLV 338 + +G+ G+K+ +++ WY+EQ Q S +E+ I+ +I+RLI + ++ Sbjct: 727 ARCEVEGND-TGIKRSNVVTWYLEQVADQ--IESEDELISRKNLIEKLIDRLIYHDQVII 783 Query: 337 VIDEGTAAEGAAAR----SSEHRILAVNPNYVID 248 + T + + +L V+PNYV++ Sbjct: 784 PLKTSTLKPRIQVQKDFVEEDDPLLVVHPNYVVE 817
>MC6ZB_XENLA (Q7ZY18) Zygotic DNA replication licensing factor mcm6-B (Zygotic| minichromosome maintenance protein 6-B) (zMCM6-B) (zMCM6b) Length = 825 Score = 50.8 bits (120), Expect = 4e-06 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Frame = -2 Query: 682 DAPLDNDDEQPVQ-------GDATAQDG------------PDEPAEVIKKKLVITEEHFQ 560 D LD +DE V+ GDA +G + A K L + ++ Sbjct: 664 DVNLDQEDEHEVEEPQEGINGDADVPNGVNGHINGINGHAEETNAAPPKPSLRLNFAEYK 723 Query: 559 RVTQALVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCIK 380 R++ LV++LR+ E+ +D + ++ +LI WY+++ ++ S EE+ + I Sbjct: 724 RISNLLVLQLRKIED---EDDENETSQRKSELINWYLKEIESE--IDSEEELVNRKQIID 778 Query: 379 AIIERLIQREGHLVVIDE----GTAAEGAAARSSEHRILAVNPNYVID 248 +I RL+ + L+ + + GT E A E L VNPNY+++ Sbjct: 779 KVIHRLVHYDQILIELIQTGLKGTEDENVA--KEEDPYLVVNPNYILE 824
>MCM6_SCHPO (P49731) DNA replication licensing factor mcm6 (Minichromosome| maintenance protein 6) Length = 892 Score = 49.7 bits (117), Expect = 8e-06 Identities = 36/152 (23%), Positives = 71/152 (46%) Frame = -2 Query: 673 LDNDDEQPVQGDATAQDGPDEPAEVIKKKLVITEEHFQRVTQALVMRLRQHEESVKKDGD 494 L+ND+ G+ D + K K+ IT + + + ++ LRQ + + Sbjct: 756 LENDNTNTTNGN----DNVSSEEALQKPKVKITYDKYVSIMNGILQVLRQ------RSTE 805 Query: 493 GLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCIKAIIERLIQREGHLVVIDEGTAA 314 G+ G+ GDL+ Y+E + Q + + E++ EV ++ ++ RL+ ++++ Sbjct: 806 GVDGVPAGDLVQSYLELREDQ--FHTEEDIIYEVGLVRKVLTRLVHES---IIMEIQNLT 860 Query: 313 EGAAARSSEHRILAVNPNYVID*LTS*GHTAN 218 + A E R+ +++PN ID L S G N Sbjct: 861 DSAVRLPFEERVFSIHPNCDIDALLSNGDVPN 892
>MCM6_CAEEL (P34647) DNA replication licensing factor mcm-6| Length = 810 Score = 48.5 bits (114), Expect = 2e-05 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 1/142 (0%) Frame = -2 Query: 673 LDNDDEQPVQGDATAQDGPDEPAEVIK-KKLVITEEHFQRVTQALVMRLRQHEESVKKDG 497 ++ D E D+ DG E A I KL I+ + +++++ LV+ +R E++ + Sbjct: 681 VEADKENQRGDDSMDHDGEKENAPKIDIAKLKISFKEYKQLSDVLVLHMRSDEDN--QGE 738 Query: 496 DGLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCIKAIIERLIQREGHLVVIDEGTA 317 D G+KQ L+ WY+ A + E+ + + +I RLI ++ L+ +++G Sbjct: 739 DEYDGVKQSALVEWYLSTIEAD--LETEEDFNVQKTICERVIHRLIHQDHVLLEVEQG-- 794 Query: 316 AEGAAARSSEHRILAVNPNYVI 251 E L V+PNYVI Sbjct: 795 ---------EDPTLCVHPNYVI 807
>MCM6Z_XENTR (Q6P1V8) Zygotic DNA replication licensing factor mcm6 (Zygotic| minichromosome maintenance protein 6) (zMCM6) Length = 823 Score = 46.6 bits (109), Expect = 7e-05 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Frame = -2 Query: 682 DAPLDNDDE--------QPVQGDATAQDG-----------PDEP-AEVIKKKLVITEEHF 563 D LD +DE + + GDA+ G +EP A K L + + Sbjct: 664 DVNLDQEDEHEAEEEPQEVINGDASVPSGVNGHVNGMNGHAEEPNAATPKPSLRLNFAEY 723 Query: 562 QRVTQALVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCI 383 +R++ LV++LR+ E+ + ++ +LI WY+++ ++ S EE+ + I Sbjct: 724 KRISNLLVLQLRKMEDEDE------TSQRKSELINWYLKEIESE--IDSEEELVTRKQII 775 Query: 382 KAIIERLIQREGHLVVIDEGTAAEGAAARS---SEHRILAVNPNYVID 248 ++ RL+ + L+ + + T +G E L VNPNY+++ Sbjct: 776 DKVVHRLVHYDQILIELTQ-TGLKGTGDEEVPKEEDPYLVVNPNYILE 822
>MC6ZA_XENLA (Q498J7) Zygotic DNA replication licensing factor mcm6-A (Zygotic| minichromosome maintenance protein 6-A) (zMCM6-A) (zMCM6a) Length = 823 Score = 46.2 bits (108), Expect = 9e-05 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 24/169 (14%) Frame = -2 Query: 682 DAPLDNDDE--------QPVQGDATAQDG------------PDEPAEVIKKKLVITEEHF 563 D LD DDE + GDA +G + A K L + + Sbjct: 664 DVNLDQDDEHEPEDETQEGTNGDAEVPNGVNGHVNGINGHSQESNAAAAKPSLRLNFAEY 723 Query: 562 QRVTQALVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCI 383 +R++ LV +LR+ E+ + ++ +L+ WY+++ ++ S EE+ + I Sbjct: 724 KRISNLLVQQLRKMEDEDE------TSQRRSELMNWYLKEIESE--IDSEEELINRKQII 775 Query: 382 KAIIERLIQREGHLVVIDE----GTAAEGAAARSSEHRILAVNPNYVID 248 +I RL+ + L+ + + GT E A E L VNPNY+++ Sbjct: 776 DKVIHRLVHYDQILIELTQTELKGTGDEVVA--KEEDPYLVVNPNYILE 822
>MCM6M_XENTR (Q28CM3) Maternal DNA replication licensing factor mcm6 (Maternal| minichromosome maintenance protein 6) (mMCM6) Length = 821 Score = 44.3 bits (103), Expect = 4e-04 Identities = 35/147 (23%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Frame = -2 Query: 667 NDDEQPVQGDATAQDGP--DEPAEVIKKKLVITEEHFQRVTQALVMRLRQHEESVKKDGD 494 N+ E+ ++ T QD P D+P+ K+ E +++++ LV+ +++ EE ++ Sbjct: 686 NNGEEAME---TNQDEPINDKPSTNAGLKMSFAE--YKQISNLLVLHMQKMEEVEEE--- 737 Query: 493 GLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCIKAIIERLIQREGHLVVIDEGTA- 317 + DL+ WY+++ A+ + E+ + + I+ +I RLI + L+ +++ Sbjct: 738 --CHLTTTDLVNWYLKEMEAE--IETETELILKKRLIEKVIHRLINYDHILIELNKSELK 793 Query: 316 ----AEGAAARSSEHRILAVNPNYVID 248 ++ + ++E RIL VNPNY+++ Sbjct: 794 TMDDSKETSEDAAEDRILVVNPNYMLE 820
>MCM6M_XENLA (Q5FWY4) Maternal DNA replication licensing factor mcm6 (Maternal| minichromosome maintenance protein 6) (mMCM6) (xMCM6) Length = 821 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/156 (21%), Positives = 75/156 (48%), Gaps = 17/156 (10%) Frame = -2 Query: 664 DDEQPVQGD------------ATAQDGPDEPAEVIKKKLVITEEHFQRVTQALVMRLRQH 521 +DE+ ++G+ T QD P L ++ +++++ LV+ +++ Sbjct: 672 EDEKNIEGENNGNLNNGEEAMETNQDEPINEKPSSNAGLKMSFAEYKQISNLLVLYMQKM 731 Query: 520 EESVKKDGDGLAGMKQGDLIIWYVEQQNAQGAYSSTEEVKEEVKCIKAIIERLIQREGHL 341 EE+ ++ + DL+ WY+++ A+ + E+ + + I+ +I RLI + L Sbjct: 732 EETEEE-----CHLTTTDLVNWYLKEMEAE--IETETELILKKRLIEKVIHRLIYYDHIL 784 Query: 340 VVIDEGTA-----AEGAAARSSEHRILAVNPNYVID 248 + +++ + ++E RIL VNPNY+++ Sbjct: 785 IELNKSELKTMDDTKETGEDAAEDRILVVNPNYMLE 820
>CLPB_RALSO (Q8XZR0) Chaperone clpB| Length = 862 Score = 37.0 bits (84), Expect = 0.057 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Frame = -2 Query: 616 DEPAEVIKKKLVITEEHFQRVTQALVMRLRQHEESVKKDGDGLAGMKQGDLI-------- 461 DE A IK ++ E ++ + L+ +L+ E+VKK+ D A K+ +LI Sbjct: 394 DEAAARIKMEIDSKPEAMDKLDRRLI-QLKIEREAVKKETDE-ASQKRLELIEQEIERLQ 451 Query: 460 --------IWYVEQQNAQGAYSSTEEVKEEVKCIKAIIERLIQREGHLVVIDE 326 IW E+ AQGA + VKEE+ +K I RL QREG L + E Sbjct: 452 KEYADLEEIWKAEKGAAQGAAA----VKEEIDRVKLEIARL-QREGKLDKVAE 499
>TRS85_YEAST (P46944) Transport protein particle 85 kDa subunit (TRAPP 85 kDa| subunit) (Sporulation protein GSG1) Length = 698 Score = 35.0 bits (79), Expect = 0.22 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = +2 Query: 323 SFIYDHKMTFPLYQPLYNGLDALNFFLHLFCRTICTLGILLLNIPNDQIPLLHASQTIP 499 SFIYD L+QP+ + L+ + FFL +T TL + L+N D + L IP Sbjct: 297 SFIYDENSVIQLHQPVMSSLEEILFFLQAPTQT--TLSLALINSIYDMLDYLVYDLMIP 353
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 33.5 bits (75), Expect = 0.63 Identities = 23/79 (29%), Positives = 37/79 (46%) Frame = +3 Query: 447 STYQMIRSPCFMPARPSPSFLTDSSCCLSLMTKACVTLWKCSSVITNFFLITSAGSSGPS 626 ST + SP P + + + SS ++ T T SS +T S ++GPS Sbjct: 445 STSTVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPS 504 Query: 627 CAVASPCTGCSSSLSRGAS 683 + ++P + SSS+S AS Sbjct: 505 SSSSTPSSTASSSVSSTAS 523
>T2FA_YEAST (P41895) Transcription initiation factor IIF alpha subunit (EC| 2.7.11.1) (TFIIF-alpha) (TFIIF large subunit) (Transcription factor G 105 kDa subunit) (P105) Length = 735 Score = 31.2 bits (69), Expect = 3.1 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Frame = -2 Query: 670 DNDDEQPVQGDATAQDGPDEPAEVIKKKLVITEEHFQRV----TQALVMRLRQHEESVKK 503 D DD V+ D + DE A +I +E QR+ QA M LR E + Sbjct: 458 DRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSEN 517 Query: 502 DGDGLAGMKQ----GDLIIWYVEQQNAQGAYSSTE 410 + D L G K+ G+ I +++ YSS E Sbjct: 518 EEDELFGEKKIDEDGERIKKALQKTELAALYSSDE 552
>BSG2_DROME (P11929) Blastoderm-specific protein 25D| Length = 741 Score = 31.2 bits (69), Expect = 3.1 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%) Frame = -2 Query: 544 LVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQNAQGA------YSSTEEVKEEVKCI 383 L+ ++R++EE KDG L+ + + D++ + A+ A EE +E+ + Sbjct: 596 LMEKVREYEEQFSKDG-RLSPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQEISSL 654 Query: 382 KAIIERLIQREGHLVVIDEGT---AAEGAAARSSE 287 ++ IE L QR G V I G +E A S+E Sbjct: 655 QSEIEDLRQRLGESVEILTGACELTSESVAQLSAE 689
>NADE_SULTO (Q96YL5) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)| Length = 279 Score = 30.8 bits (68), Expect = 4.1 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = -2 Query: 604 EVIKKKLVITEEHFQRVTQALVMRLRQHEESVKKDGDGLAGMKQG 470 E ++KKL + F +VT +V R+R++ E KK+G G+ G+ G Sbjct: 4 EYVRKKLTLD---FGQVTDYIVRRIREYIEESKKEG-GIIGLSGG 44
>NU2M_APILI (P34849) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 333 Score = 30.4 bits (67), Expect = 5.3 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 608 WFIWTILCSSISLYWLFIIIIKRCILK 688 W ++ ++ SS+ + W +III+KR LK Sbjct: 267 WILFLLMISSMLMIWNYIIILKRVFLK 293
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 30.0 bits (66), Expect = 7.0 Identities = 24/77 (31%), Positives = 28/77 (36%) Frame = +3 Query: 441 CCSTYQMIRSPCFMPARPSPSFLTDSSCCLSLMTKACVTLWKCSSVITNFFLITSAGSSG 620 CCS +S C P S SSCC S K C + C + G Sbjct: 164 CCS-----QSSCCKPCCCSSG--CGSSCCQSSCCKPCCSQSSCCKPCC------CSSGCG 210 Query: 621 PSCAVASPCTGCSSSLS 671 SC +S C CSS S Sbjct: 211 SSCCQSSCCKPCSSQSS 227
>PZP_HUMAN (P20742) Pregnancy zone protein precursor| Length = 1482 Score = 30.0 bits (66), Expect = 7.0 Identities = 10/21 (47%), Positives = 18/21 (85%) Frame = -2 Query: 469 DLIIWYVEQQNAQGAYSSTEE 407 +++ W ++QQNAQG +SST++ Sbjct: 1239 NIVKWIMKQQNAQGGFSSTQD 1259
>SRG16_CAEEL (O17819) Serpentine receptor class gamma-16 (Protein srg-16)| Length = 325 Score = 30.0 bits (66), Expect = 7.0 Identities = 20/36 (55%), Positives = 24/36 (66%) Frame = +2 Query: 557 SLEMFFSNNQFLLNHLCWFIWTILCSSISLYWLFII 664 SL MF S FLL LC+ TI+CSS+SLY L I+ Sbjct: 189 SLSMFQSI--FLLIALCF---TIICSSVSLYKLIIL 219
>LC7L2_HUMAN (Q9Y383) Putative RNA-binding protein Luc7-like 2| Length = 392 Score = 30.0 bits (66), Expect = 7.0 Identities = 21/80 (26%), Positives = 35/80 (43%) Frame = -2 Query: 616 DEPAEVIKKKLVITEEHFQRVTQALVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQN 437 D EV KK+L T+E A R+ + E + K ++ VEQ Sbjct: 98 DRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGK-------------LLAKVEQLG 144 Query: 436 AQGAYSSTEEVKEEVKCIKA 377 A+G +++V +EV+ +A Sbjct: 145 AEGNVEESQKVMDEVEKARA 164
>ENGC1_VIBPA (Q87L00) Probable GTPase engC protein 1 (EC 3.6.1.-)| Length = 354 Score = 30.0 bits (66), Expect = 7.0 Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Frame = -2 Query: 592 KKLVITEEHFQRVTQALVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQNAQGAYSST 413 KK +T+ +RV RL++ EES++ D + L KQG +I + + + + + Sbjct: 3 KKKKLTKGQVRRVRSNQQKRLKKQEESIQWDENMLGASKQGLVITRFGQHADIEDLETGE 62 Query: 412 EEVKEEVKCIKAII--ERLIQREG 347 + + I++++ +R++ REG Sbjct: 63 VQRCNLRRGIESLVSGDRVLWREG 86
>A2MG_PONPY (Q5R4N8) Alpha-2-macroglobulin precursor (Alpha-2-M)| Length = 1474 Score = 29.6 bits (65), Expect = 9.1 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = -2 Query: 469 DLIIWYVEQQNAQGAYSSTEE 407 +++ W +QQNAQG +SST++ Sbjct: 1233 NIVKWITKQQNAQGGFSSTQD 1253
>A2MG_HUMAN (P01023) Alpha-2-macroglobulin precursor (Alpha-2-M)| Length = 1474 Score = 29.6 bits (65), Expect = 9.1 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = -2 Query: 469 DLIIWYVEQQNAQGAYSSTEE 407 +++ W +QQNAQG +SST++ Sbjct: 1233 NIVKWITKQQNAQGGFSSTQD 1253
>LC7L2_MOUSE (Q7TNC4) Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)| Length = 392 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/80 (26%), Positives = 35/80 (43%) Frame = -2 Query: 616 DEPAEVIKKKLVITEEHFQRVTQALVMRLRQHEESVKKDGDGLAGMKQGDLIIWYVEQQN 437 D EV KK+L T+E A R+ + E + K ++ VEQ Sbjct: 98 DRRTEVSKKRLAETQEEISAEVAAKAERVHELNEEIGK-------------LLAKVEQLG 144 Query: 436 AQGAYSSTEEVKEEVKCIKA 377 A+G +++V +EV+ +A Sbjct: 145 AEGNVEESQKVMDEVEKARA 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,058,736 Number of Sequences: 219361 Number of extensions: 2213682 Number of successful extensions: 6177 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5887 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6163 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
