ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY862320.1| Zea mays minichromosome maintenance protein (MCM6... 321 2e-84
2dbj|AK102937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 3e-80
3gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome... 208 2e-50
4gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome... 208 2e-50
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
6gb|AY104405.1| Zea mays PCO131134 mRNA sequence 174 2e-40
7dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 46 0.15
8gb|AC021218.9| Homo sapiens BAC clone RP11-525O1 from 7, complet... 44 0.60
9gb|AC144460.31| Mus musculus strain C57BL/6J clone rp23-109m13, ... 42 2.4
10gb|AC126430.3| Mus musculus BAC clone RP24-406F17 from chromosom... 42 2.4
11gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 m... 42 2.4
12gb|AC137827.20| Medicago truncatula clone mth2-20g23, complete s... 42 2.4
13gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cance... 42 2.4
14gb|AC018559.31| Mus musculus strain 129/Sv chromosome 6 clone ct... 42 2.4
15dbj|AK052087.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 42 2.4
16gb|AC155720.7| Mus musculus 6 BAC RP24-151P23 (Roswell Park Canc... 42 2.4
17gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, comple... 42 2.4
18ref|NM_104763.2| Arabidopsis thaliana kinase AT1G60800 mRNA, com... 40 9.4
19gb|AC168120.3| Mus musculus BAC clone RP23-49A14 from chromosome... 40 9.4
20ref|XM_631434.1| Dictyostelium discoideum hypothetical protein (... 40 9.4
21gb|AC005217.1| Homo sapiens chromosome 5, P1 clone 1047D6 (LBNL ... 40 9.4
22gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome ... 40 9.4
23gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's ... 40 9.4
24gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, co... 40 9.4
25gb|AC163624.4| Mus musculus BAC clone RP24-558P12 from chromosom... 40 9.4
26gb|AC102257.5| Mus musculus chromosome 18, clone RP24-196N23, co... 40 9.4
27gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, com... 40 9.4
28gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 9.4
29gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987... 40 9.4
30gb|AC127278.4| Mus musculus BAC clone RP24-224D24 from chromosom... 40 9.4
31gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosom... 40 9.4
32gb|AC109210.26| Mus musculus chromosome 7, clone RP23-9C7, compl... 40 9.4
33emb|AL133330.14| Human DNA sequence from clone RP1-68D18 on chro... 40 9.4
34emb|AL161448.16| Human DNA sequence from clone RP11-381H12 on ch... 40 9.4
35emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chro... 40 9.4
36ref|XM_786196.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.4
37gb|AY150495.1| Arabidopsis thaliana putative receptor kinase (At... 40 9.4
38gb|AY056294.1| Arabidopsis thaliana putative receptor kinase (At... 40 9.4
39gb|AC144913.13| Mus musculus chromosome 15, clone RP24-203A19, c... 40 9.4
40gb|AC161172.4| Mus musculus chromosome 15, clone RP24-265I13, co... 40 9.4
41gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Canc... 40 9.4
42emb|AL603889.5| Mouse DNA sequence from clone RP23-407M20 on chr... 40 9.4
43emb|AJ579533.1|MTA579533 Milnesium tardigradum partial hsp70 pro... 40 9.4
44gb|AC161880.5| Mus musculus BAC clone RP23-261N13 from chromosom... 40 9.4
45gb|AC094021.2| Homo sapiens chromosome 3 clone RP11-801L18, comp... 40 9.4
46gb|AC010602.7| Homo sapiens chromosome 5 clone CTB-122H10, compl... 40 9.4
47gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 9.4
48gb|AC092045.2| Homo sapiens chromosome 3 clone RP11-168J18, comp... 40 9.4
49gb|AC154403.2| Mus musculus BAC clone RP24-239F20 from chromosom... 40 9.4
50gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromo... 40 9.4
51gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, comp... 40 9.4
52gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, comp... 40 9.4
53gb|AC069476.25| Homo sapiens chromosome 11 clone b430h11 map 11,... 40 9.4
54gb|AC113955.20| Mus musculus chromosome 7, clone RP23-402K24, co... 40 9.4
55emb|BX817260.1|CNS0ADZ6 Arabidopsis thaliana Full-length cDNA Co... 40 9.4
56gb|AC154376.3| Mus musculus BAC clone RP23-71H16 from chromosome... 40 9.4
57gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, compl... 40 9.4
58gb|AC069148.6| Homo sapiens BAC clone RP11-107N15 from 2, comple... 40 9.4
59ref|XM_343841.2| PREDICTED: Rattus norvegicus similar to Plexin ... 40 9.4
60emb|AL954831.17| Zebrafish DNA sequence from clone DKEY-12H9 in ... 40 9.4
61dbj|AP003174.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.4
62gb|AC174458.2| Mus musculus BAC clone RP23-282D14 from chromosom... 40 9.4
63emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on ch... 40 9.4
64emb|CT025589.9| Mouse DNA sequence from clone RP24-149O16 on chr... 40 9.4
65gb|AC145960.3| Gallus gallus BAC clone CH261-18H1 from chromosom... 40 9.4
66gb|DQ163323.1| Candidatus Hamiltonella defensa clone P060073 gen... 40 9.4
67gb|DQ163294.1| Candidatus Hamiltonella defensa clone P060016 gen... 40 9.4
68gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence,... 40 9.4
69emb|AL806516.4| Mouse DNA sequence from clone RP23-453N20 on chr... 40 9.4
70emb|AL365326.14| Mouse DNA sequence from clone RP23-381K21 on ch... 40 9.4 
>gb|AY862320.1| Zea mays minichromosome maintenance protein (MCM6) mRNA, complete cds
          Length = 2785

 Score =  321 bits (162), Expect = 2e-84
 Identities = 252/282 (89%)
 Strand = Plus / Minus

                                                                        
Query: 315  gctgctgttccttcatctatgaccacaagatgaccttccctctgtatcagcctctctata 374
            ||||| || ||||| || ||||| | |||||| ||||||| |||||| || |||||||||
Sbjct: 2480 gctgcagtaccttcgtcaatgactataagatggccttcccgctgtataagtctctctata 2421

                                                                        
Query: 375  atggccttgatgcacttaacttcttccttcacctcttctgtagaactatatgcaccttgg 434
            ||||||||||| ||||| |||||||||||||||||| | |||||||||||||| |||| |
Sbjct: 2420 atggccttgatacacttcacttcttccttcacctctgcagtagaactatatgcccctttg 2361

                                                                        
Query: 435  gcattctgctgctcaacataccaaatgatcagatccccttgcttcatgccagccagacca 494
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||
Sbjct: 2360 gcattctgctgctcaacataccagatgataagatccccttgcttcatgccagctaaacca 2301

                                                                        
Query: 495  tccccgtctttcttgactgattcttcatgttgcctcagtctcatgaccaaagcttgtgta 554
            || || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||
Sbjct: 2300 tctccatctttcttgactgactcttcatgctgccttagtctcataaccaaagcttgagta 2241

                                                      
Query: 555  actctctggaaatgttcttcagtaataaccaatttcttctta 596
            ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 2240 actctctggaagtgttcttcagttattaccaatttcttctta 2199



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 247  aatcgataacatagtttgggttaaccgccaggattct 283
            |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 2560 aatcaataacatagttcgggttaactgccagtattct 2524
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>dbj|AK102937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J19, full
            insert sequence
          Length = 2977

 Score =  307 bits (155), Expect = 3e-80
 Identities = 230/255 (90%)
 Strand = Plus / Minus

                                                                        
Query: 342  agatgaccttccctctgtatcagcctctctataatggccttgatgcacttaacttcttcc 401
            ||||| || ||||||||||| | ||||||||| ||||||||||||||||| |||||||||
Sbjct: 2495 agatggccatccctctgtattaacctctctatgatggccttgatgcacttcacttcttcc 2436

                                                                        
Query: 402  ttcacctcttctgtagaactatatgcaccttgggcattctgctgctcaacataccaaatg 461
            ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| 
Sbjct: 2435 ttcacctctgctgtagaactataggctccttgggcattctgctgctcaacataccaaatt 2376

                                                                        
Query: 462  atcagatccccttgcttcatgccagccagaccatccccgtctttcttgactgattcttca 521
            ||||||||||||||||||||||||||||||||||| || |||||| |||| || ||||||
Sbjct: 2375 atcagatccccttgcttcatgccagccagaccatctccatctttcgtgacagactcttca 2316

                                                                        
Query: 522  tgttgcctcagtctcatgaccaaagcttgtgtaactctctggaaatgttcttcagtaata 581
            || ||||  |||||||| || |||||||| || |||||||||||||||||||| || |||
Sbjct: 2315 tgctgccgtagtctcataactaaagcttgcgtgactctctggaaatgttcttcggttata 2256

                           
Query: 582  accaatttcttctta 596
            ||||| |||||||||
Sbjct: 2255 accaacttcttctta 2241



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 247  aatcgataacatagtttgggttaaccgccaggattctg 284
            ||||||| |||||||| || ||||| ||||||||||||
Sbjct: 2599 aatcgatgacatagttcggattaactgccaggattctg 2562
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>gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24,
              complete sequence
          Length = 146492

 Score =  208 bits (105), Expect = 2e-50
 Identities = 123/129 (95%)
 Strand = Plus / Minus

                                                                          
Query: 368    ctctataatggccttgatgcacttaacttcttccttcacctcttctgtagaactatatgc 427
              |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct: 140528 ctctatgatggccttgatgcacttcacttcttccttcacctctgctgtagaactataggc 140469

                                                                          
Query: 428    accttgggcattctgctgctcaacataccaaatgatcagatccccttgcttcatgccagc 487
               |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 140468 tccttgggcattctgctgctcaacataccaaattatcagatccccttgcttcatgccagc 140409

                       
Query: 488    cagaccatc 496
              |||||||||
Sbjct: 140408 cagaccatc 140400



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                          
Query: 501    tctttcttgactgattcttcatgttgcctcagtctcatgaccaaagcttgtgtaactctc 560
              |||||| |||| || |||||||| ||||  |||||||| || |||||||| || ||||||
Sbjct: 139657 tctttcgtgacagactcttcatgctgccgtagtctcataactaaagcttgcgtgactctc 139598

                                                  
Query: 561    tggaaatgttcttcagtaataaccaatttcttctta 596
              |||||||||||||| || |||||||| |||||||||
Sbjct: 139597 tggaaatgttcttcggttataaccaacttcttctta 139562



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 247    aatcgataacatagtttgggttaaccgccaggattctg 284
              ||||||| |||||||| || ||||| ||||||||||||
Sbjct: 140877 aatcgatgacatagttcggattaactgccaggattctg 140840
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>gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1384_A02, complete sequence
          Length = 100251

 Score =  208 bits (105), Expect = 2e-50
 Identities = 123/129 (95%)
 Strand = Plus / Minus

                                                                         
Query: 368   ctctataatggccttgatgcacttaacttcttccttcacctcttctgtagaactatatgc 427
             |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct: 14795 ctctatgatggccttgatgcacttcacttcttccttcacctctgctgtagaactataggc 14736

                                                                         
Query: 428   accttgggcattctgctgctcaacataccaaatgatcagatccccttgcttcatgccagc 487
              |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 14735 tccttgggcattctgctgctcaacataccaaattatcagatccccttgcttcatgccagc 14676

                      
Query: 488   cagaccatc 496
             |||||||||
Sbjct: 14675 cagaccatc 14667



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                         
Query: 501   tctttcttgactgattcttcatgttgcctcagtctcatgaccaaagcttgtgtaactctc 560
             |||||| |||| || |||||||| ||||  |||||||| || |||||||| || ||||||
Sbjct: 13924 tctttcgtgacagactcttcatgctgccgtagtctcataactaaagcttgcgtgactctc 13865

                                                 
Query: 561   tggaaatgttcttcagtaataaccaatttcttctta 596
             |||||||||||||| || |||||||| |||||||||
Sbjct: 13864 tggaaatgttcttcggttataaccaacttcttctta 13829



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 247   aatcgataacatagtttgggttaaccgccaggattctg 284
             ||||||| |||||||| || ||||| ||||||||||||
Sbjct: 15144 aatcgatgacatagttcggattaactgccaggattctg 15107
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  208 bits (105), Expect = 2e-50
 Identities = 123/129 (95%)
 Strand = Plus / Minus

                                                                           
Query: 368     ctctataatggccttgatgcacttaacttcttccttcacctcttctgtagaactatatgc 427
               |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct: 8218307 ctctatgatggccttgatgcacttcacttcttccttcacctctgctgtagaactataggc 8218248

                                                                           
Query: 428     accttgggcattctgctgctcaacataccaaatgatcagatccccttgcttcatgccagc 487
                |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8218247 tccttgggcattctgctgctcaacataccaaattatcagatccccttgcttcatgccagc 8218188

                        
Query: 488     cagaccatc 496
               |||||||||
Sbjct: 8218187 cagaccatc 8218179



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 501     tctttcttgactgattcttcatgttgcctcagtctcatgaccaaagcttgtgtaactctc 560
               |||||| |||| || |||||||| ||||  |||||||| || |||||||| || ||||||
Sbjct: 8217436 tctttcgtgacagactcttcatgctgccgtagtctcataactaaagcttgcgtgactctc 8217377

                                                   
Query: 561     tggaaatgttcttcagtaataaccaatttcttctta 596
               |||||||||||||| || |||||||| |||||||||
Sbjct: 8217376 tggaaatgttcttcggttataaccaacttcttctta 8217341



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 247     aatcgataacatagtttgggttaaccgccaggattctg 284
               ||||||| |||||||| || ||||| ||||||||||||
Sbjct: 8218656 aatcgatgacatagttcggattaactgccaggattctg 8218619
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>gb|AY104405.1| Zea mays PCO131134 mRNA sequence
          Length = 1414

 Score =  174 bits (88), Expect = 2e-40
 Identities = 112/120 (93%)
 Strand = Plus / Minus

                                                                       
Query: 368 ctctataatggccttgatgcacttaacttcttccttcacctcttctgtagaactatatgc 427
           |||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||
Sbjct: 131 ctctataatggccttgatacacttcacttcttccttcacctctgcagtagaactatatgc 72

                                                                       
Query: 428 accttgggcattctgctgctcaacataccaaatgatcagatccccttgcttcatgccagc 487
            |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 71  ccctttggcattctgctgctcaacataccagatgataagatccccttgcttcatgccagc 12



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 247 aatcgataacatagtttgggttaaccgccaggattct 283
           |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 368 aatcaataacatagttcgggttaactgccagtattct 332
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 481     tgccagccagaccatccccgtct 503
               |||||||||||||||||||||||
Sbjct: 3228798 tgccagccagaccatccccgtct 3228820
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>gb|AC021218.9| Homo sapiens BAC clone RP11-525O1 from 7, complete sequence
          Length = 159482

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 590   cttcttaatcacctctgctggttcat 615
             |||||||| |||||||||||||||||
Sbjct: 50475 cttcttaagcacctctgctggttcat 50500
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>gb|AC144460.31| Mus musculus strain C57BL/6J clone rp23-109m13, complete sequence
          Length = 212991

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 522   tgttgcctcagtctcatgacc 542
             |||||||||||||||||||||
Sbjct: 14229 tgttgcctcagtctcatgacc 14209
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>gb|AC126430.3| Mus musculus BAC clone RP24-406F17 from chromosome 10, complete
             sequence
          Length = 154482

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 400   ccttcacctcttctgtagaac 420
             |||||||||||||||||||||
Sbjct: 43839 ccttcacctcttctgtagaac 43859
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>gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 map 6, complete sequence
          Length = 170323

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 522   tgttgcctcagtctcatgacc 542
             |||||||||||||||||||||
Sbjct: 22954 tgttgcctcagtctcatgacc 22974
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>gb|AC137827.20| Medicago truncatula clone mth2-20g23, complete sequence
          Length = 105959

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 380   cttgatgcacttaacttcttc 400
             |||||||||||||||||||||
Sbjct: 36648 cttgatgcacttaacttcttc 36668
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>gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 134089

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 502    ctttcttgactgattcttcat 522
              |||||||||||||||||||||
Sbjct: 109869 ctttcttgactgattcttcat 109889
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>gb|AC018559.31| Mus musculus strain 129/Sv chromosome 6 clone ct7-596k8, complete
             sequence
          Length = 111775

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 522   tgttgcctcagtctcatgacc 542
             |||||||||||||||||||||
Sbjct: 29002 tgttgcctcagtctcatgacc 29022
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>dbj|AK052087.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230045B14
           product:retinoblastoma binding protein 2, full insert
           sequence
          Length = 2715

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 522 tgttgcctcagtctcatgacc 542
           |||||||||||||||||||||
Sbjct: 387 tgttgcctcagtctcatgacc 407
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>gb|AC155720.7| Mus musculus 6 BAC RP24-151P23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 210211

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 522    tgttgcctcagtctcatgacc 542
              |||||||||||||||||||||
Sbjct: 178105 tgttgcctcagtctcatgacc 178125
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>gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, complete sequence
          Length = 201535

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   ggtggcaggtacaacatttct 146
             |||||||||||||||||||||
Sbjct: 66039 ggtggcaggtacaacatttct 66059
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>ref|NM_104763.2| Arabidopsis thaliana kinase AT1G60800 mRNA, complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 611  ttcatctggaccatcttgtg 630
            ||||||||||||||||||||
Sbjct: 1207 ttcatctggaccatcttgtg 1188
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>gb|AC168120.3| Mus musculus BAC clone RP23-49A14 from chromosome 3, complete sequence
          Length = 198651

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 617   tggaccatcttgtgcagtagcatc 640
             ||||||||||||| ||||||||||
Sbjct: 97274 tggaccatcttgttcagtagcatc 97251
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>ref|XM_631434.1| Dictyostelium discoideum hypothetical protein (DDB0188114), partial
            mRNA
          Length = 1683

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 655  gttcatcatcattatcaagaggtg 678
            |||||||||||| |||||||||||
Sbjct: 1142 gttcatcatcatcatcaagaggtg 1165
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>gb|AC005217.1| Homo sapiens chromosome 5, P1 clone 1047D6 (LBNL H20), complete
             sequence
          Length = 85641

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   cctctgtatcagcctctcta 372
             ||||||||||||||||||||
Sbjct: 78191 cctctgtatcagcctctcta 78210
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>gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome 8, complete sequence
          Length = 240812

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 586    atttcttcttaatcacctct 605
              ||||||||||||||||||||
Sbjct: 125192 atttcttcttaatcacctct 125173
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>gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 236662

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   caccttctgctgctgttcct 326
             ||||||||||||||||||||
Sbjct: 71591 caccttctgctgctgttcct 71572
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>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence
          Length = 211576

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    caccttctgctgctgttcct 326
              ||||||||||||||||||||
Sbjct: 136350 caccttctgctgctgttcct 136369
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>gb|AC163624.4| Mus musculus BAC clone RP24-558P12 from chromosome 3, complete sequence
          Length = 197711

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 617   tggaccatcttgtgcagtagcatc 640
             ||||||||||||| ||||||||||
Sbjct: 35279 tggaccatcttgttcagtagcatc 35256
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>gb|AC102257.5| Mus musculus chromosome 18, clone RP24-196N23, complete sequence
          Length = 194837

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     cttggaaggaagatacaatt 95
              ||||||||||||||||||||
Sbjct: 164547 cttggaaggaagatacaatt 164566
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>gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, complete sequence
          Length = 204704

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   acttcttccttcacctcttc 412
             ||||||||||||||||||||
Sbjct: 12038 acttcttccttcacctcttc 12019
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 643     cttgtactggctgttcatca 662
               ||||||||||||||||||||
Sbjct: 2592744 cttgtactggctgttcatca 2592763
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>gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987-SK65D3, complete sequence
          Length = 192730

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    acaacatttctagagcatag 155
              ||||||||||||||||||||
Sbjct: 158609 acaacatttctagagcatag 158628
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>gb|AC127278.4| Mus musculus BAC clone RP24-224D24 from chromosome 18, complete
            sequence
          Length = 149172

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   cttggaaggaagatacaatt 95
            ||||||||||||||||||||
Sbjct: 1148 cttggaaggaagatacaatt 1167
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>gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosome 15, complete sequence
          Length = 168423

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    acttcttccttcacctcttc 412
              ||||||||||||||||||||
Sbjct: 127344 acttcttccttcacctcttc 127363
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>gb|AC109210.26| Mus musculus chromosome 7, clone RP23-9C7, complete sequence
          Length = 236592

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 586   atttcttcttaatcacctct 605
             ||||||||||||||||||||
Sbjct: 30225 atttcttcttaatcacctct 30206
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>emb|AL133330.14| Human DNA sequence from clone RP1-68D18 on chromosome 11p12-13 Contains
              part of the SLC1A2 gene for three variants of solute
              carrier family 1 (glial high affinity glutamate
              transporter) member 2 and part of the CD44 gene for CD44
              antigen (homing function and Indian blood group system)
              with five variants, complete sequence
          Length = 183682

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    acttaacttcttccttcacc 407
              ||||||||||||||||||||
Sbjct: 116031 acttaacttcttccttcacc 116012
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>emb|AL161448.16| Human DNA sequence from clone RP11-381H12 on chromosome 9 Contains the
             5' end of the SHB gene for SHB (Src homology 2 domain
             containing) adaptor protein B and two CpG islands,
             complete sequence
          Length = 164857

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   cttccttgggaagggggtgg 130
             ||||||||||||||||||||
Sbjct: 36704 cttccttgggaagggggtgg 36685
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>emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chromosome 20 Contains a
             novel gene (LOC284749) and two novel genes, complete
             sequence
          Length = 80725

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 92    aattccagagatacatgtgcttccttgg 119
             ||||||||||| |||||| |||||||||
Sbjct: 33749 aattccagagagacatgttcttccttgg 33722
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>ref|XM_786196.1| PREDICTED: Strongylocentrotus purpuratus similar to MUTator MUT-7,
            HBE269 like (mut-7) (LOC586412), mRNA
          Length = 2832

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 654  tgttcatcatcattatcaag 673
            ||||||||||||||||||||
Sbjct: 1946 tgttcatcatcattatcaag 1927
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>gb|AY150495.1| Arabidopsis thaliana putative receptor kinase (At1g60800) mRNA,
           complete cds
          Length = 1930

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 611 ttcatctggaccatcttgtg 630
           ||||||||||||||||||||
Sbjct: 681 ttcatctggaccatcttgtg 662
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>gb|AY056294.1| Arabidopsis thaliana putative receptor kinase (At1g60800) mRNA,
            complete cds
          Length = 2585

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 611  ttcatctggaccatcttgtg 630
            ||||||||||||||||||||
Sbjct: 1207 ttcatctggaccatcttgtg 1188
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>gb|AC144913.13| Mus musculus chromosome 15, clone RP24-203A19, complete sequence
          Length = 167647

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    cttcttccttcacctcttct 413
              ||||||||||||||||||||
Sbjct: 114954 cttcttccttcacctcttct 114973
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>gb|AC161172.4| Mus musculus chromosome 15, clone RP24-265I13, complete sequence
          Length = 181782

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    cttcttccttcacctcttct 413
              ||||||||||||||||||||
Sbjct: 106078 cttcttccttcacctcttct 106059
to top
>gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 199446

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 557    tctctggaaatgttcttcag 576
              ||||||||||||||||||||
Sbjct: 119792 tctctggaaatgttcttcag 119773
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>emb|AL603889.5| Mouse DNA sequence from clone RP23-407M20 on chromosome 11, complete
              sequence
          Length = 145052

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    tgcttcatgccagccagacc 493
              ||||||||||||||||||||
Sbjct: 123521 tgcttcatgccagccagacc 123502
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>emb|AJ579533.1|MTA579533 Milnesium tardigradum partial hsp70 protein, isoform 3
          Length = 548

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 425 tgcaccttgggcattctgct 444
           ||||||||||||||||||||
Sbjct: 498 tgcaccttgggcattctgct 479
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>gb|AC161880.5| Mus musculus BAC clone RP23-261N13 from chromosome 18, complete
             sequence
          Length = 204676

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   tttgaatgtgtgctctattg 194
             ||||||||||||||||||||
Sbjct: 78619 tttgaatgtgtgctctattg 78638
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>gb|AC094021.2| Homo sapiens chromosome 3 clone RP11-801L18, complete sequence
          Length = 214160

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   agttagctgtgtgtcctcag 236
             ||||||||||||||||||||
Sbjct: 86154 agttagctgtgtgtcctcag 86173
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>gb|AC010602.7| Homo sapiens chromosome 5 clone CTB-122H10, complete sequence
          Length = 145424

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   atgtgcttccttgggaaggg 125
             ||||||||||||||||||||
Sbjct: 17414 atgtgcttccttgggaaggg 17433
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     ttcttccttcacctcttctg 414
               ||||||||||||||||||||
Sbjct: 1106376 ttcttccttcacctcttctg 1106357
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>gb|AC092045.2| Homo sapiens chromosome 3 clone RP11-168J18, complete sequence
          Length = 171343

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    agttagctgtgtgtcctcag 236
              ||||||||||||||||||||
Sbjct: 105690 agttagctgtgtgtcctcag 105671
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>gb|AC154403.2| Mus musculus BAC clone RP24-239F20 from chromosome 16, complete
             sequence
          Length = 131387

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   cttcttccttcacctcttct 413
             ||||||||||||||||||||
Sbjct: 62770 cttcttccttcacctcttct 62789
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>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete
             sequence
          Length = 240827

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   cctctgtatcagcctctcta 372
             ||||||||||||||||||||
Sbjct: 71870 cctctgtatcagcctctcta 71889
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>gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, complete sequence
          Length = 183378

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   cctctgtatcagcctctcta 372
             ||||||||||||||||||||
Sbjct: 79697 cctctgtatcagcctctcta 79678
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>gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, complete sequence
          Length = 178405

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    cctctgtatcagcctctcta 372
              ||||||||||||||||||||
Sbjct: 142908 cctctgtatcagcctctcta 142889
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>gb|AC069476.25| Homo sapiens chromosome 11 clone b430h11 map 11, complete sequence
          Length = 184824

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   tatgatttccatttgaatgt 183
             ||||||||||||||||||||
Sbjct: 37091 tatgatttccatttgaatgt 37110
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>gb|AC113955.20| Mus musculus chromosome 7, clone RP23-402K24, complete sequence
          Length = 196206

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   atttcttcttaatcacctct 605
             ||||||||||||||||||||
Sbjct: 12369 atttcttcttaatcacctct 12388
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>emb|BX817260.1|CNS0ADZ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH9ZC07 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2454

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 611  ttcatctggaccatcttgtg 630
            ||||||||||||||||||||
Sbjct: 1108 ttcatctggaccatcttgtg 1089
to top
>gb|AC154376.3| Mus musculus BAC clone RP23-71H16 from chromosome 13, complete sequence
          Length = 169417

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 584    caatttcttcttaatcacct 603
              ||||||||||||||||||||
Sbjct: 100730 caatttcttcttaatcacct 100711
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>gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, complete sequence
          Length = 149842

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  acaacatttctagagcatag 155
            ||||||||||||||||||||
Sbjct: 7617 acaacatttctagagcatag 7636
to top
>gb|AC069148.6| Homo sapiens BAC clone RP11-107N15 from 2, complete sequence
          Length = 71173

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    agtactggtggcaaattaat 61
             ||||||||||||||||||||
Sbjct: 13671 agtactggtggcaaattaat 13652
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>ref|XM_343841.2| PREDICTED: Rattus norvegicus similar to Plexin B3 precursor (Plexin
           6) (LOC363517), mRNA
          Length = 5853

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 caccttctgctgctgttcct 326
           ||||||||||||||||||||
Sbjct: 58  caccttctgctgctgttcct 77
to top
>emb|AL954831.17| Zebrafish DNA sequence from clone DKEY-12H9 in linkage group 20, complete
              sequence
          Length = 230844

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 154    aggacagcagtatgatttccattt 177
              ||||||||||||| ||||||||||
Sbjct: 154439 aggacagcagtattatttccattt 154462
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>dbj|AP003174.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-136I14, complete
             sequence
          Length = 170156

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   tatgatttccatttgaatgt 183
             ||||||||||||||||||||
Sbjct: 91862 tatgatttccatttgaatgt 91881
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>gb|AC174458.2| Mus musculus BAC clone RP23-282D14 from chromosome 13, complete sequence
          Length = 205673

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 584    caatttcttcttaatcacct 603
              ||||||||||||||||||||
Sbjct: 146693 caatttcttcttaatcacct 146712
to top
>emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on chromosome 4, complete
              sequence
          Length = 208131

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    cttcttccttcacctcttct 413
              ||||||||||||||||||||
Sbjct: 161248 cttcttccttcacctcttct 161229
to top
>emb|CT025589.9| Mouse DNA sequence from clone RP24-149O16 on chromosome 16, complete
             sequence
          Length = 159420

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   cttcttccttcacctcttct 413
             ||||||||||||||||||||
Sbjct: 73704 cttcttccttcacctcttct 73723
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>gb|AC145960.3| Gallus gallus BAC clone CH261-18H1 from chromosome unknown, complete
              sequence
          Length = 204548

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 577    taataaccaatttcttctta 596
              ||||||||||||||||||||
Sbjct: 141352 taataaccaatttcttctta 141371
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>gb|DQ163323.1| Candidatus Hamiltonella defensa clone P060073 genomic sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 600 acctctgctggttcatctgg 619
           ||||||||||||||||||||
Sbjct: 84  acctctgctggttcatctgg 103
to top
>gb|DQ163294.1| Candidatus Hamiltonella defensa clone P060016 genomic sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 600 acctctgctggttcatctgg 619
           ||||||||||||||||||||
Sbjct: 84  acctctgctggttcatctgg 103
to top
>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C)
          Length = 158230

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 643   cttgtactggctgttcatca 662
             ||||||||||||||||||||
Sbjct: 48126 cttgtactggctgttcatca 48107
to top
>emb|AL806516.4| Mouse DNA sequence from clone RP23-453N20 on chromosome X, complete
             sequence
          Length = 179534

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 560   ctggaaatgttcttcagtaa 579
             ||||||||||||||||||||
Sbjct: 63246 ctggaaatgttcttcagtaa 63227
to top
>emb|AL365326.14| Mouse DNA sequence from clone RP23-381K21 on chromosome 1, complete
             sequence
          Length = 189860

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   gggaagggggtggcaggtac 137
             ||||||||||||||||||||
Sbjct: 43603 gggaagggggtggcaggtac 43622


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,858,611
Number of Sequences: 3902068
Number of extensions: 6858611
Number of successful extensions: 143796
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143547
Number of HSP's gapped (non-prelim): 249
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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