ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465889.1| Oryza sativa (japonica cultivar-group), mRNA 159 1e-35
2ref|XM_465890.1| Oryza sativa (japonica cultivar-group), mRNA 159 1e-35
3dbj|AK101016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
4dbj|AK062572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
5ref|XM_465891.1| Oryza sativa (japonica cultivar-group), mRNA 135 2e-28
6dbj|AK063549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
8dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
9gb|AY103650.1| Zea mays PCO122083 mRNA sequence 113 7e-22
10gb|BT017982.1| Zea mays clone EL01N0525D02.c mRNA sequence 58 4e-05
11emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin... 44 0.53
12ref|NM_100414.1| Arabidopsis thaliana catalytic AT1G05350 mRNA, ... 42 2.1
13emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on ch... 42 2.1
14gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 2.1
15emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in ... 42 2.1
16emb|AL935310.8| Zebrafish DNA sequence from clone CH211-235I6 in... 42 2.1
17gb|AC000098.1|YUP8H12 Arabidopsis thaliana chromosome 1 YAC yUP8... 42 2.1
18gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 8.3
19gb|AC158520.2| Mus musculus BAC clone RP23-434P22 from chromosom... 40 8.3
20gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosom... 40 8.3
21gb|AC122057.3| Mus musculus BAC clone RP24-468F14 from chromosom... 40 8.3
22gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complet... 40 8.3
23emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on ch... 40 8.3
24gb|AE014174.1| Mus musculus piebald deletion region section 2 of... 40 8.3
25gb|AC124075.3| Homo sapiens chromosome 8, clone RP11-918D7, comp... 40 8.3
26gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.3
27gb|AC090348.4| Homo sapiens chromosome 18, clone RP11-834M2, com... 40 8.3
28gb|AC106856.5| Homo sapiens chromosome 8, clone RP11-64A23, comp... 40 8.3
29gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete ... 40 8.3
30gb|AC079120.6| Homo sapiens BAC clone RP11-345M24 from 2, comple... 40 8.3
31dbj|AB003928.1| Microbispora rosea subsp. aerata pyk gene for py... 40 8.3
32gb|AE016830.1| Enterococcus faecalis V583, complete genome 40 8.3
33gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complet... 40 8.3
34emb|CT009530.5| Mouse DNA sequence from clone RP23-33O7 on chrom... 40 8.3 
>ref|XM_465889.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1759

 Score =  159 bits (80), Expect = 1e-35
 Identities = 207/248 (83%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                        
Query: 365  gtaggaatcttcatctggaagttcacggacaaggccttctggaaggatgtctgttgcggc 424
            |||||||||| ||  ||| ||||| ||||||||||||||||| ||| | || | | | | 
Sbjct: 1286 gtaggaatctgcagttgggagttcgcggacaaggccttctgggaggctatcagctccagt 1227

                                                                        
Query: 425  cctttgaacgcttgatgttgctgtgtcactatcatcaagaacactaatgttccactcgtt 484
             ||| ||| ||||| |||  |||||||||| ||||| | ||||||||| ||||| || ||
Sbjct: 1226 gcttagaatgcttggtgtcactgtgtcactgtcatcgacaacactaatattccaatcatt 1167

                                                                        
Query: 485  atccatgtgaaccgggtattcaattgctgcggatgcttcagcttccatcttagcctttgc 544
            ||| |  || |||||  |||||  |||||| ||||||||||||||||||||||| |||||
Sbjct: 1166 atctagatggaccggacattcatctgctgctgatgcttcagcttccatcttagcttttgc 1107

                                                                        
Query: 545  cgctgcatctctagcaggttttgattgcatatattcttttctgtctctcaagacatgctg 604
             ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 1106 tgctgcatctctagcaggttttgactgcatatattc-tttctgtctctgaacacatgctg 1048

                    
Query: 605  ggtttgaa 612
            | ||||||
Sbjct: 1047 gatttgaa 1040
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>ref|XM_465890.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1558

 Score =  159 bits (80), Expect = 1e-35
 Identities = 207/248 (83%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                        
Query: 365  gtaggaatcttcatctggaagttcacggacaaggccttctggaaggatgtctgttgcggc 424
            |||||||||| ||  ||| ||||| ||||||||||||||||| ||| | || | | | | 
Sbjct: 1231 gtaggaatctgcagttgggagttcgcggacaaggccttctgggaggctatcagctccagt 1172

                                                                        
Query: 425  cctttgaacgcttgatgttgctgtgtcactatcatcaagaacactaatgttccactcgtt 484
             ||| ||| ||||| |||  |||||||||| ||||| | ||||||||| ||||| || ||
Sbjct: 1171 gcttagaatgcttggtgtcactgtgtcactgtcatcgacaacactaatattccaatcatt 1112

                                                                        
Query: 485  atccatgtgaaccgggtattcaattgctgcggatgcttcagcttccatcttagcctttgc 544
            ||| |  || |||||  |||||  |||||| ||||||||||||||||||||||| |||||
Sbjct: 1111 atctagatggaccggacattcatctgctgctgatgcttcagcttccatcttagcttttgc 1052

                                                                        
Query: 545  cgctgcatctctagcaggttttgattgcatatattcttttctgtctctcaagacatgctg 604
             ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 1051 tgctgcatctctagcaggttttgactgcatatattc-tttctgtctctgaacacatgctg 993

                    
Query: 605  ggtttgaa 612
            | ||||||
Sbjct: 992  gatttgaa 985
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>dbj|AK101016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149E02, full
            insert sequence
          Length = 1759

 Score =  159 bits (80), Expect = 1e-35
 Identities = 207/248 (83%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                        
Query: 365  gtaggaatcttcatctggaagttcacggacaaggccttctggaaggatgtctgttgcggc 424
            |||||||||| ||  ||| ||||| ||||||||||||||||| ||| | || | | | | 
Sbjct: 1286 gtaggaatctgcagttgggagttcgcggacaaggccttctgggaggctatcagctccagt 1227

                                                                        
Query: 425  cctttgaacgcttgatgttgctgtgtcactatcatcaagaacactaatgttccactcgtt 484
             ||| ||| ||||| |||  |||||||||| ||||| | ||||||||| ||||| || ||
Sbjct: 1226 gcttagaatgcttggtgtcactgtgtcactgtcatcgacaacactaatattccaatcatt 1167

                                                                        
Query: 485  atccatgtgaaccgggtattcaattgctgcggatgcttcagcttccatcttagcctttgc 544
            ||| |  || |||||  |||||  |||||| ||||||||||||||||||||||| |||||
Sbjct: 1166 atctagatggaccggacattcatctgctgctgatgcttcagcttccatcttagcttttgc 1107

                                                                        
Query: 545  cgctgcatctctagcaggttttgattgcatatattcttttctgtctctcaagacatgctg 604
             ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 1106 tgctgcatctctagcaggttttgactgcatatattc-tttctgtctctgaacacatgctg 1048

                    
Query: 605  ggtttgaa 612
            | ||||||
Sbjct: 1047 gatttgaa 1040
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>dbj|AK062572.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D11, full
            insert sequence
          Length = 1558

 Score =  159 bits (80), Expect = 1e-35
 Identities = 207/248 (83%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                        
Query: 365  gtaggaatcttcatctggaagttcacggacaaggccttctggaaggatgtctgttgcggc 424
            |||||||||| ||  ||| ||||| ||||||||||||||||| ||| | || | | | | 
Sbjct: 1231 gtaggaatctgcagttgggagttcgcggacaaggccttctgggaggctatcagctccagt 1172

                                                                        
Query: 425  cctttgaacgcttgatgttgctgtgtcactatcatcaagaacactaatgttccactcgtt 484
             ||| ||| ||||| |||  |||||||||| ||||| | ||||||||| ||||| || ||
Sbjct: 1171 gcttagaatgcttggtgtcactgtgtcactgtcatcgacaacactaatattccaatcatt 1112

                                                                        
Query: 485  atccatgtgaaccgggtattcaattgctgcggatgcttcagcttccatcttagcctttgc 544
            ||| |  || |||||  |||||  |||||| ||||||||||||||||||||||| |||||
Sbjct: 1111 atctagatggaccggacattcatctgctgctgatgcttcagcttccatcttagcttttgc 1052

                                                                        
Query: 545  cgctgcatctctagcaggttttgattgcatatattcttttctgtctctcaagacatgctg 604
             ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 1051 tgctgcatctctagcaggttttgactgcatatattc-tttctgtctctgaacacatgctg 993

                    
Query: 605  ggtttgaa 612
            | ||||||
Sbjct: 992  gatttgaa 985
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>ref|XM_465891.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1474

 Score =  135 bits (68), Expect = 2e-28
 Identities = 96/104 (92%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                        
Query: 509  tgctgcggatgcttcagcttccatcttagcctttgccgctgcatctctagcaggttttga 568
            |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1149 tgctgctgatgcttcagcttccatcttagcttttgctgctgcatctctagcaggttttga 1090

                                                        
Query: 569  ttgcatatattcttttctgtctctcaagacatgctgggtttgaa 612
             ||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct: 1089 ctgcatatattc-tttctgtctctgaacacatgctggatttgaa 1047
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>dbj|AK063549.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D08, full
            insert sequence
          Length = 1474

 Score =  135 bits (68), Expect = 2e-28
 Identities = 96/104 (92%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                        
Query: 509  tgctgcggatgcttcagcttccatcttagcctttgccgctgcatctctagcaggttttga 568
            |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1149 tgctgctgatgcttcagcttccatcttagcttttgctgctgcatctctagcaggttttga 1090

                                                        
Query: 569  ttgcatatattcttttctgtctctcaagacatgctgggtttgaa 612
             ||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct: 1089 ctgcatatattc-tttctgtctctgaacacatgctggatttgaa 1047
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  117 bits (59), Expect = 4e-23
 Identities = 71/75 (94%)
 Strand = Plus / Minus

                                                                            
Query: 509      tgctgcggatgcttcagcttccatcttagcctttgccgctgcatctctagcaggttttga 568
                |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 18148477 tgctgctgatgcttcagcttccatcttagcttttgctgctgcatctctagcaggttttga 18148418

                               
Query: 569      ttgcatatattcttt 583
                 ||||||||||||||
Sbjct: 18148417 ctgcatatattcttt 18148403



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 365      gtaggaatcttcatctggaagttcacggacaaggccttctgg 406
                |||||||||| ||  ||| ||||| |||||||||||||||||
Sbjct: 18149163 gtaggaatctgcagttgggagttcgcggacaaggccttctgg 18149122
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>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0047E05
          Length = 184323

 Score =  117 bits (59), Expect = 4e-23
 Identities = 71/75 (94%)
 Strand = Plus / Minus

                                                                         
Query: 509   tgctgcggatgcttcagcttccatcttagcctttgccgctgcatctctagcaggttttga 568
             |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 71878 tgctgctgatgcttcagcttccatcttagcttttgctgctgcatctctagcaggttttga 71819

                            
Query: 569   ttgcatatattcttt 583
              ||||||||||||||
Sbjct: 71818 ctgcatatattcttt 71804



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 365   gtaggaatcttcatctggaagttcacggacaaggccttctgg 406
             |||||||||| ||  ||| ||||| |||||||||||||||||
Sbjct: 72564 gtaggaatctgcagttgggagttcgcggacaaggccttctgg 72523
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>gb|AY103650.1| Zea mays PCO122083 mRNA sequence
          Length = 1162

 Score =  113 bits (57), Expect = 7e-22
 Identities = 111/129 (86%)
 Strand = Plus / Minus

                                                                       
Query: 455 atcatcaagaacactaatgttccactcgttatccatgtgaaccgggtattcaattgctgc 514
           |||||||| ||||||||| |||||||| || || | ||| || ||  ||||| || ||| 
Sbjct: 759 atcatcaacaacactaatattccactcattgtctaggtggacaggacattcattttctgt 700

                                                                       
Query: 515 ggatgcttcagcttccatcttagcctttgccgctgcatctctagcaggttttgattgcat 574
           ||||||||||||||||||||||| ||| || |||||||||||||||||||| |||| |||
Sbjct: 699 ggatgcttcagcttccatcttagtcttcgctgctgcatctctagcaggtttggattccat 640

                    
Query: 575 atattcttt 583
           |||||||||
Sbjct: 639 atattcttt 631



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 378 tctggaagttcacggacaaggccttctggaaggatgtctg 417
           |||||||| ||||||||||| |||||||| ||||| ||||
Sbjct: 830 tctggaagctcacggacaagaccttctggtaggatatctg 791



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 277 aagatgagtttagtgcgtcgagctgccgctggagatcctcgagatcatc 325
           |||||| |||||| || || || || |||||||| ||||||||||||||
Sbjct: 937 aagatgcgtttagggcatcaagttgacgctggagctcctcgagatcatc 889
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>gb|BT017982.1| Zea mays clone EL01N0525D02.c mRNA sequence
          Length = 594

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 455 atcatcaagaacactaatgttccactcgttatccatgtgaaccgggtattcaattgctgc 514
           |||||||| ||||||||| |||||||| || || | ||| || ||  ||||| || ||| 
Sbjct: 81  atcatcaacaacactaatattccactcattgtctaggtggacaggacattcattttctgg 22

                                
Query: 515 ggatgcttcagcttccatctt 535
           |||||||||||||||||||||
Sbjct: 21  ggatgcttcagcttccatctt 1



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 378 tctggaagttcacggacaaggccttctggaaggatgtctg 417
           |||||||| ||||||||||| |||||||| ||||| ||||
Sbjct: 152 tctggaagctcacggacaagaccttctggtaggatatctg 113



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 277 aagatgagtttagtgcgtcgagctgccgctggagatcctcgagatcatc 325
           |||||| |||||| || || || || |||||||| ||||||||||||||
Sbjct: 259 aagatgcgtttagggcatcaagttgacgctggagctcctcgagatcatc 211
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>emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin gene cluster, strain
             DSM 40236
          Length = 90600

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 296   gagctgccgctggagatcctcg 317
             ||||||||||||||||||||||
Sbjct: 83596 gagctgccgctggagatcctcg 83617
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>ref|NM_100414.1| Arabidopsis thaliana catalytic AT1G05350 mRNA, complete cds
          Length = 1338

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                        
Query: 515  ggatgcttcagcttccatcttagcctttgccgctgcatctctagcaggttttgattgcat 574
            |||||| ||||||||||||||||| || || || ||||| ||  | |||||||   ||||
Sbjct: 1086 ggatgcatcagcttccatcttagctttagcagcagcatccctttctggttttgcaagcat 1027

                     
Query: 575  atattcttt 583
            |||||||||
Sbjct: 1026 atattcttt 1018
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>emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on chromosome 13 Contains parts
              of 2 novel genes and a CpG island, complete sequence
          Length = 157175

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 221    aatggtatctggtttgggttt 241
              |||||||||||||||||||||
Sbjct: 127776 aatggtatctggtttgggttt 127756
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 294     tcgagctgccgctggagatcc 314
               |||||||||||||||||||||
Sbjct: 2661629 tcgagctgccgctggagatcc 2661609
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>emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in linkage group 14,
              complete sequence
          Length = 220420

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 133    aaaacacagctaacatttctc 153
              |||||||||||||||||||||
Sbjct: 176335 aaaacacagctaacatttctc 176355
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>emb|AL935310.8| Zebrafish DNA sequence from clone CH211-235I6 in linkage group 14,
             complete sequence
          Length = 101904

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   aaaacacagctaacatttctc 153
             |||||||||||||||||||||
Sbjct: 90631 aaaacacagctaacatttctc 90611
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>gb|AC000098.1|YUP8H12 Arabidopsis thaliana chromosome 1 YAC yUP8H12 complete sequence
          Length = 103576

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                         
Query: 515   ggatgcttcagcttccatcttagcctttgccgctgcatctctagcaggttttgattgcat 574
             |||||| ||||||||||||||||| || || || ||||| ||  | |||||||   ||||
Sbjct: 14189 ggatgcatcagcttccatcttagctttagcagcagcatccctttctggttttgcaagcat 14130

                      
Query: 575   atattcttt 583
             |||||||||
Sbjct: 14129 atattcttt 14121
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 310     gatcctcgagatcatcgtcg 329
               ||||||||||||||||||||
Sbjct: 1686332 gatcctcgagatcatcgtcg 1686351
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>gb|AC158520.2| Mus musculus BAC clone RP23-434P22 from chromosome 14, complete
             sequence
          Length = 201291

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   tcagcttccatcttagcctt 541
             ||||||||||||||||||||
Sbjct: 13047 tcagcttccatcttagcctt 13066
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>gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosome 9, complete sequence
          Length = 179156

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    aatggtatctggtttgggtt 240
              ||||||||||||||||||||
Sbjct: 111846 aatggtatctggtttgggtt 111865
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>gb|AC122057.3| Mus musculus BAC clone RP24-468F14 from chromosome 9, complete sequence
          Length = 169815

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 455    atcatcaagaacactaatgttcca 478
              |||||||| |||||||||||||||
Sbjct: 145600 atcatcaacaacactaatgttcca 145577
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>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 455   atcatcaagaacactaatgttcca 478
             |||||||| |||||||||||||||
Sbjct: 33553 atcatcaacaacactaatgttcca 33530
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>emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on chromosome 13 Contains the
              5' end of the UGCGL2 gene for UDP-glucose ceramide
              glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), the
              5' end of the gene for a novel protein similar to heparan
              sulfate 6-sulfotransferase and two CpG islands, complete
              sequence
          Length = 186131

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    ttcttttctgtctctcaaga 597
              ||||||||||||||||||||
Sbjct: 140757 ttcttttctgtctctcaaga 140776
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>gb|AE014174.1| Mus musculus piebald deletion region section 2 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 522    tcagcttccatcttagcctt 541
              ||||||||||||||||||||
Sbjct: 159573 tcagcttccatcttagcctt 159592
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>gb|AC124075.3| Homo sapiens chromosome 8, clone RP11-918D7, complete sequence
          Length = 181753

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 568    attgcatatattcttttctg 587
              ||||||||||||||||||||
Sbjct: 180222 attgcatatattcttttctg 180241
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 291     gcgtcgagctgccgctggag 310
               ||||||||||||||||||||
Sbjct: 4436997 gcgtcgagctgccgctggag 4437016
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>gb|AC090348.4| Homo sapiens chromosome 18, clone RP11-834M2, complete sequence
          Length = 184119

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 593    caagacatgctgggtttgaa 612
              ||||||||||||||||||||
Sbjct: 150468 caagacatgctgggtttgaa 150487
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>gb|AC106856.5| Homo sapiens chromosome 8, clone RP11-64A23, complete sequence
          Length = 165059

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   attgcatatattcttttctg 587
             ||||||||||||||||||||
Sbjct: 75115 attgcatatattcttttctg 75096
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>gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete sequence
          Length = 167236

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   caagacatgctgggtttgaa 612
             ||||||||||||||||||||
Sbjct: 15572 caagacatgctgggtttgaa 15591
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>gb|AC079120.6| Homo sapiens BAC clone RP11-345M24 from 2, complete sequence
          Length = 104547

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 574   tatattcttttctgtctctc 593
             ||||||||||||||||||||
Sbjct: 64238 tatattcttttctgtctctc 64257
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>dbj|AB003928.1| Microbispora rosea subsp. aerata pyk gene for pyruvate kinase,
           complete cds
          Length = 1620

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 gcgtcgagctgccgctggag 310
           ||||||||||||||||||||
Sbjct: 771 gcgtcgagctgccgctggag 790
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 518     tgcttcagcttccatcttag 537
               ||||||||||||||||||||
Sbjct: 2734575 tgcttcagcttccatcttag 2734556
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>gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complete sequence
          Length = 195883

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    aatggtatctggtttgggtt 240
              ||||||||||||||||||||
Sbjct: 187325 aatggtatctggtttgggtt 187306
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>emb|CT009530.5| Mouse DNA sequence from clone RP23-33O7 on chromosome 14, complete
              sequence
          Length = 188700

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    tcagcttccatcttagcctt 541
              ||||||||||||||||||||
Sbjct: 100909 tcagcttccatcttagcctt 100890


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,707,116
Number of Sequences: 3902068
Number of extensions: 4707116
Number of successful extensions: 83968
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83787
Number of HSP's gapped (non-prelim): 175
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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