ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009085.1| Triticum aestivum clone wkm1c.pk005.m16:fis, full... 72 3e-10
2gb|AC091470.16| Mus musculus chromosome 3, clone RP23-237K2, com... 38 4.1
3emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 ... 38 4.1
4gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, com... 38 4.1

>gb|BT009085.1| Triticum aestivum clone wkm1c.pk005.m16:fis, full insert mRNA
           sequence
          Length = 654

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 37  atctccacatgacagngatgcccagtatcgctggccaccagnaactccacanaaacag 94
           ||||||||||||||| || ||||||||| |||||||||||| ||||||||| ||||||
Sbjct: 482 atctccacatgacagtgacgcccagtattgctggccaccag-aactccacataaacag 426



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>gb|AC091470.16| Mus musculus chromosome 3, clone RP23-237K2, complete sequence
          Length = 141824

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   aaaaaggaatgatcatctc 41
            |||||||||||||||||||
Sbjct: 3775 aaaaaggaatgatcatctc 3793



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>emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 on chromosome 20p11.22-12.1
             Contains STSs and GSSs, complete sequence
          Length = 143712

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    tgatcatctccacatgaca 50
             |||||||||||||||||||
Sbjct: 82550 tgatcatctccacatgaca 82568



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>gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, complete sequence
          Length = 196936

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 23   aaaaaggaatgatcatctc 41
            |||||||||||||||||||
Sbjct: 9855 aaaaaggaatgatcatctc 9837


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 554,828
Number of Sequences: 3902068
Number of extensions: 554828
Number of successful extensions: 29659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29653
Number of HSP's gapped (non-prelim): 6
length of query: 95
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 74
effective length of database: 17,151,101,840
effective search space: 1269181536160
effective search space used: 1269181536160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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