ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1e22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
2dbj|AK062056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 2e-04
4gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 54 2e-04
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
6gb|AY111426.1| Zea mays CL12066_1 mRNA sequence 46 0.048
7gb|AC158127.3| Mus musculus chromosome 19, clone RP23-135N12, co... 42 0.75
8gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, c... 42 0.75

>dbj|AK066205.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059O10, full
            insert sequence
          Length = 3354

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 92   tatctncaaggagtgctctggnatgtacgtaagacctttct 132
            ||||| ||||||||||||||| ||||| |||||||||||||
Sbjct: 2801 tatctccaaggagtgctctggtatgtatgtaagacctttct 2761



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>dbj|AK062056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C05, full
            insert sequence
          Length = 2024

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 92   tatctncaaggagtgctctggnatgtacgtaagacctttct 132
            ||||| ||||||||||||||| ||||| |||||||||||||
Sbjct: 1519 tatctccaaggagtgctctggtatgtatgtaagacctttct 1479



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                    
Query: 92      tatctncaaggagtgctctggnatgtacgtaagacct 128
               ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 2893781 tatctccaaggagtgctctggtatgtatgtaagacct 2893745



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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 92    tatctncaaggagtgctctggnatgtacgtaagacct 128
             ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 31268 tatctccaaggagtgctctggtatgtatgtaagacct 31232



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                    
Query: 92      tatctncaaggagtgctctggnatgtacgtaagacct 128
               ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 2893892 tatctccaaggagtgctctggtatgtatgtaagacct 2893856



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>gb|AY111426.1| Zea mays CL12066_1 mRNA sequence
          Length = 655

 Score = 46.1 bits (23), Expect = 0.048
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                       
Query: 56  ctatgaccttcctgctgagatggcagacgatgcgtgtatctncaaggagtgctctggnat 115
           |||||||||||||| ||| ||  |||| |  || ||||||| |||||||||||| || ||
Sbjct: 521 ctatgaccttcctgatgacataccagaggtggcatgtatctccaaggagtgctccggaat 580

                            
Query: 116 gtacgtaagacctttct 132
           ||| | ||| |||||||
Sbjct: 581 gtaagcaaggcctttct 597



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>gb|AC158127.3| Mus musculus chromosome 19, clone RP23-135N12, complete sequence
          Length = 217544

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    cacagaagacataagagtaat 35
             |||||||||||||||||||||
Sbjct: 17442 cacagaagacataagagtaat 17422



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>gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, complete sequence
          Length = 196065

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     cacagaagacataagagtaat 35
              |||||||||||||||||||||
Sbjct: 128002 cacagaagacataagagtaat 127982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 826,556
Number of Sequences: 3902068
Number of extensions: 826556
Number of successful extensions: 14868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14845
Number of HSP's gapped (non-prelim): 22
length of query: 230
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 208
effective length of database: 17,147,199,772
effective search space: 3566617552576
effective search space used: 3566617552576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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