ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1e21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OAF_DROME (Q9NLA6) Out at first protein [Contains: Out at first ... 31 3.3
2NU153_HUMAN (P49790) Nuclear pore complex protein Nup153 (Nucleo... 31 4.3
3CDS2_MOUSE (Q99L43) Phosphatidate cytidylyltransferase 2 (EC 2.7... 31 4.3
4CNX1_ARATH (Q39054) Molybdopterin biosynthesis CNX1 protein (Mol... 30 5.6
5ZDS2_YEAST (P54786) Protein ZDS2 30 5.6
6SUHW4_HUMAN (Q6N043) Suppressor of hairy wing homolog 4 30 7.3
7COQ5_RAT (Q4G064) Ubiquinone biosynthesis methyltransferase COQ5... 30 7.3
8FABH_RHIME (Q92QT4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 ... 30 9.6
9WD51A_MOUSE (Q8JZX3) WD-repeat protein 51A 30 9.6
10CDS2_RAT (Q91XU8) Phosphatidate cytidylyltransferase 2 (EC 2.7.7... 30 9.6

>OAF_DROME (Q9NLA6) Out at first protein [Contains: Out at first short|
           protein]
          Length = 487

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 607 PLDQSTNGSHYGDGATQSTFEASGSLPPMPSTFDDMPSVSNKPANS 470
           P  Q     H+   A  S  ++S S PP PST    PS S+  ++S
Sbjct: 435 PSRQQKQHQHHSQVAPTSHHQSSSSTPPTPSTSSSPPSSSSSSSSS 480



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>NU153_HUMAN (P49790) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
            (153 kDa nucleoporin)
          Length = 1475

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = -1

Query: 706  FSYDFSGETFSYDLTGGTFSYDLSVPNNQFLQYPLDQSTNGSHYGDGATQSTFEASGSLP 527
            FS+  S +T   + +  TFS+ ++ P+ +  + P   +     +  GA  ST    G+  
Sbjct: 1133 FSFGNSEQTKDENSSKSTFSFSMTKPSEKESEQPAKAT-----FAFGAQTSTTADQGAAK 1187

Query: 526  PMPSTFDDMPSVSNKPANS 470
            P+ S  ++  S S+ PA S
Sbjct: 1188 PVFSFLNNSSSSSSTPATS 1206



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>CDS2_MOUSE (Q99L43) Phosphatidate cytidylyltransferase 2 (EC 2.7.7.41)|
           (CDP-diglyceride synthetase 2) (CDP-diglyceride
           pyrophosphorylase 2) (CDP-diacylglycerol synthase 2)
           (CDS 2) (CTP:phosphatidate cytidylyltransferase 2)
           (CDP-DAG synthase 2) (CDP-DG sy
          Length = 444

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 607 PLDQSTNGSHYGDGATQSTFEASGSLPPMPSTFDDMPSVSNK 482
           P D+ +      DG T S  E+     P+P++ DD P V N+
Sbjct: 15  PEDKESESEAKLDGETASDSESRAETAPLPTSVDDTPEVLNR 56



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>CNX1_ARATH (Q39054) Molybdopterin biosynthesis CNX1 protein (Molybdenum|
           cofactor biosynthesis enzyme CNX1)
          Length = 670

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
 Frame = +3

Query: 84  VIKLLQKDLRWTAAYPSXIRHLPNQQKTVSPQXKQ*ARSLVQYCGRD*DTT--------- 236
           V+  +++   WT+ +P  +R    +     P   +  R+++++   D   T         
Sbjct: 337 VVPTIRQLAGWTSPHPLRVRLRLQEPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAESTG 396

Query: 237 ---KFRLLQKSSSDAMMQTPLFGNLQHGPTSKASIVASD 344
                RLL   S++A+++ P  GN+    +S ++I+ SD
Sbjct: 397 HQMSSRLLSMRSANALLELPATGNVLSAGSSVSAIIVSD 435



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>ZDS2_YEAST (P54786) Protein ZDS2|
          Length = 942

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 676 SYDLTGGTFSYDLSVPNNQFLQYPLDQSTNGSHYGDGATQSTFEASGSLPPMPSTFDDM- 500
           S+D++GG  +YD+ V ++           +     +  T  T     +LPP   TF+D+ 
Sbjct: 769 SFDISGGDVNYDVEVHSSISRDTTAGLEEDIGAEREDNTSPTAPQISTLPPRKLTFEDVV 828

Query: 499 -PSVSNKP 479
            P  SN P
Sbjct: 829 KPDYSNAP 836



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>SUHW4_HUMAN (Q6N043) Suppressor of hairy wing homolog 4|
          Length = 979

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = -1

Query: 616 LQYPLDQSTNGSHYGDGATQSTFEASGS--LPPMPSTFD--------DMPSVSNKPANSN 467
           L + L Q T  SHY  G T S    S S  L   PST +          PS S   ANS+
Sbjct: 144 LLFDLTQDTGLSHYQGGPTLSMAGMSESSFLSKRPSTSEVNNVNPKKPKPSESVSGANSS 203

Query: 466 CLNPTMKDP 440
            + P++K P
Sbjct: 204 AVLPSVKSP 212



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>COQ5_RAT (Q4G064) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 327

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 419 KSCCLREWVFHGWVQAIGVCRLIGNRR 499
           +SC L  +  HGW +  G CRL G RR
Sbjct: 5   RSCVLWSYCGHGWSRLAGDCRLPGFRR 31



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>FABH_RHIME (Q92QT4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 323

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 602 QWVLQKLIVWHRQIIGEGSTSQIIGEGFTR 691
           +W++Q+  +  R I GEG TS  +GE   R
Sbjct: 32  EWIVQRTGIRQRYIAGEGETSASLGEAAAR 61



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>WD51A_MOUSE (Q8JZX3) WD-repeat protein 51A|
          Length = 405

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 657 EPSPMICLCQTISFCSTHWINQLMAVT-TVMVLLNQLLKQVDRFHQCL 517
           EP   I + QT++    H + QL  +T TV +L  +L    DR  QCL
Sbjct: 346 EPQESISMPQTLTSTLEHIVGQLDILTQTVSILEQRLTLTEDRLKQCL 393



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>CDS2_RAT (Q91XU8) Phosphatidate cytidylyltransferase 2 (EC 2.7.7.41)|
           (CDP-diglyceride synthetase 2) (CDP-diglyceride
           pyrophosphorylase 2) (CDP-diacylglycerol synthase 2)
           (CDS 2) (CTP:phosphatidate cytidylyltransferase 2)
           (CDP-DAG synthase 2) (CDP-DG synt
          Length = 443

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 607 PLDQSTNGSHYGDGATQSTFEASGSLPPMPSTFDDMPSVSNK 482
           P D+ +      DG T S  E+     P P++ DD P V N+
Sbjct: 15  PEDKESESEAKLDGETASDSESRAETAPPPTSIDDTPEVLNR 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,977,920
Number of Sequences: 219361
Number of extensions: 1846422
Number of successful extensions: 5202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5197
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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