>IF4E2_WHEAT (Q03389) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)|
           (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25
           kDa subunit) (eIF-(iso)4F p28 subunit)
          Length = 209

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 44/46 (95%), Positives = 44/46 (95%)
 Frame = -3

Query: 279 TASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           TASNEAVQVDIGKKWKEVIDYN KMVYSFHDDSRS KPSRGGRYTV
Sbjct: 164 TASNEAVQVDIGKKWKEVIDYNDKMVYSFHDDSRSQKPSRGGRYTV 209

>IF4E2_ORYSA (P48600) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)|
           (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25
           kDa subunit) (eIF-(iso)4F p28 subunit)
          Length = 206

 Score = 84.7 bits (208), Expect = 5e-17
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = -3

Query: 279 TASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           TASNEAVQV+IGKKWKE++DYN KMVYSFHDD++  KPSRGGRY V
Sbjct: 161 TASNEAVQVNIGKKWKEIVDYNDKMVYSFHDDAKREKPSRGGRYNV 206

>IF4E2_MAIZE (O81482) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)|
           (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25
           kDa subunit) (eIF-(iso)4F p28 subunit)
          Length = 216

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = -3

Query: 279 TASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           TASNEAVQV+IGKKWK+VIDYN K+ Y+FHDDS+  KPSRGGRYTV
Sbjct: 171 TASNEAVQVNIGKKWKDVIDYNDKITYTFHDDSKRDKPSRGGRYTV 216

>IF4E1_MAIZE (O81481) Eukaryotic translation initiation factor 4E-1 (eIF4E-1)|
           (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F p26 subunit)
          Length = 218

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -3

Query: 276 ASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           A+NEA QV IGK+WKE++DY   + +  HDD++        RYTV
Sbjct: 174 AANEAAQVSIGKQWKELLDYKDSIGFIVHDDAKKMDKGLKERYTV 218

>IF4E1_ORYSA (P48599) Eukaryotic translation initiation factor 4E-1 (eIF4E-1)|
           (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F p26 subunit)
          Length = 227

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -3

Query: 276 ASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           A+NEA Q+ IGK+WKE +DY   + +  HDD++        RYTV
Sbjct: 183 AANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYTV 227

>IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)|
           (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25
           kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso
           protein) (eIF(iso)4E)
          Length = 198

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = -3

Query: 279 TASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXK 169
           T SNEAV + IGKKWKE++D   K+ ++ HDDSR  +
Sbjct: 159 TKSNEAVLMGIGKKWKEILDVTDKITFNNHDDSRRSR 195

>IF4E1_ARATH (O23252) Eukaryotic translation initiation factor 4E-1 (eIF4E-1)|
           (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F p26 subunit)
          Length = 235

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = -3

Query: 276 ASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYT 145
           ASNEA QV IGK+WKE +DYN  + +  H+D++    +    YT
Sbjct: 191 ASNEAAQVSIGKQWKEFLDYNNSIGFIIHEDAKKLDRNAKNAYT 234

>IF4E1_WHEAT (P29557) Eukaryotic translation initiation factor 4E-1 (eIF4E-1)|
           (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F p26 subunit)
          Length = 215

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -3

Query: 276 ASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           A+NEA Q+ IGK+WKE +DY   + +  H+D++        RYTV
Sbjct: 171 AANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV 215

>IF4E5_ARATH (Q9C7P2) Putative eukaryotic translation initiation factor 4E-5|
           (eIF4E type 5) (eIF-4E type 5) (mRNA cap-binding protein
           type 5)
          Length = 240

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -3

Query: 276 ASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           A+NE  Q+ IGK+WKE++ YN  + +  H+D+++       RYTV
Sbjct: 196 AANEEAQLSIGKQWKELLGYNDTIGFIVHEDAKTLDRDAKRRYTV 240

>IF4E4_ARATH (Q9C7P6) Putative eukaryotic translation initiation factor 4E-4|
           (eIF4E type 4) (eIF-4E type 4) (mRNA cap-binding protein
           type 4)
          Length = 240

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -3

Query: 276 ASNEAVQVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV 142
           A+NE  Q+ IGK+WKE++ YN  + +  H+D+++       RYTV
Sbjct: 196 AANEEAQLSIGKQWKELLGYNETIGFIVHEDAKTLDRDAKRRYTV 240

>YDH4_SCHPO (Q92349) Hypothetical protein C6G9.04 in chromosome I|
          Length = 1318

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 12  VCHKQN--DIIVLENCLKQQYQRRISVKHYTDTFPSCGLHHVCSLTRCIVHLCLVFXFSS 185
           VCH     D I L NCL+   ++++   ++TD F S G  +     + I H    + FSS
Sbjct: 728 VCHNSEFKDPINLSNCLRNLLEKQLLSYNFTDWFASLGSEYENVYVKFISH----YDFSS 783

>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)|
            [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan
            receptor for endocytosis)] (Fragment)
          Length = 1431

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
 Frame = +3

Query: 108  PSCGLHHVCSLTR-CIVHL--------CLVFXF-SSHRGSCRPSYXCSQ*PPSISCQC 251
            P+C +H  C+    C+ +L        C V  F   + G C     CSQ    +SC C
Sbjct: 918  PACSVHATCTENNTCVCNLNYEGDGITCTVVDFCKQNNGGCAKVAKCSQKGTQVSCSC 975

>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]|
          Length = 2559

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
 Frame = +3

Query: 108  PSCGLHHVCSLTR-CIVHL--------CLVFXF-SSHRGSCRPSYXCSQ*PPSISCQC 251
            P+C +H  C     C+ +L        C V  F   + G C     CSQ    +SC C
Sbjct: 2061 PACSMHATCMENNTCVCNLNYEGDGITCTVVDFCKQNNGGCAKVAKCSQKGTQVSCSC 2118

>UVRA_PASMU (P57979) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 943

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 20  QAKRHNSIGKLPQTTVSEANLGETLHGHFSELRSS 124
           Q  RH  IG      V+E ++GETLH  FSEL  S
Sbjct: 416 QEARHVYIGTTTLPDVAEKSIGETLH-FFSELHLS 449

>MURE_BACCR (Q819Q0) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 491

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 255 VDIGKKWKEVIDYNXKMVYSFHDDSRSXKP-SRGGRYTV*GCTHDEDRSSEKCPCSVSPR 79
           VD G+ +  ++DY      S  +  ++ K  ++G  Y + GC  D DR+      SV+ +
Sbjct: 339 VDGGQNYTVIVDY-AHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATK 397

Query: 78  FASDTV 61
           +A+  +
Sbjct: 398 YATHAI 403

>MURE_BACAN (Q81WC7) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 491

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 255 VDIGKKWKEVIDYNXKMVYSFHDDSRSXKP-SRGGRYTV*GCTHDEDRSSEKCPCSVSPR 79
           VD G+ +  ++DY      S  +  ++ K  ++G  Y + GC  D DR+      SV+ +
Sbjct: 339 VDGGQNYTVIVDY-AHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQ 397

Query: 78  FASDTV 61
           +A+  +
Sbjct: 398 YATHAI 403

>MURE_STRAW (Q82AE1) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 506

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 258 QVDIGKKWKEVIDYNXKMVYSFHDDSRSXKPSRGGRYTV*GCTHDEDRSSEKCPCSVSPR 79
           +VD+G+ +  V+DY  K            K + G  + V GC  D DR +++ P   +  
Sbjct: 350 RVDVGQPYLAVVDYAHKTDAVESVLRALRKVTEGKLHIVLGCGGDRDR-TKRMPMGAAAA 408

Query: 78  FASDTVV 58
             +DT V
Sbjct: 409 RLADTAV 415


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,457,325
Number of Sequences: 219361
Number of extensions: 734953
Number of successful extensions: 1976
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)