ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1e17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_187539.1| Oryza sativa (japonica cultivar-group), predic... 46 0.069
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.069
3gb|AF358764.1| Oryza sativa clone Osh47 putative apyrase mRNA, p... 46 0.069
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.069
5gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.069
6gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.069
7emb|CR749338.1| Homo sapiens mRNA; cDNA DKFZp686O088 (from clone... 44 0.27
8gb|AF378542.2|AF378542 Homo sapiens bradykinin receptor B2 (BDKR... 44 0.27
9emb|AL355102.5|CNS05TCL Human chromosome 14 DNA sequence BAC R-4... 44 0.27
10gb|L27594.1|HUMBB2R Homo sapiens bradykinin B2 receptor gene seq... 44 0.27
11emb|AL669971.2| Human DNA sequence from clone RP11-419D21 on chr... 42 1.1
12gb|AY557190.1| Avian orthoreovirus clone ARV 138 non-structural ... 42 1.1
13gb|BT017796.1| Zea mays clone EL01N0505C10.c mRNA sequence 40 4.2
14ref|XM_755645.1| Ustilago maydis 521 hypothetical protein (UM045... 40 4.2
15emb|AL132655.13|HSJ806M20 Human DNA sequence from clone RP4-806M... 40 4.2
16emb|AJ251760.1|HSA251760 Homo sapiens NESP55, GNAS1 antisense (p... 40 4.2
17emb|AL645545.8| Mouse DNA sequence from clone RP23-203J4 on chro... 40 4.2

>ref|NM_187539.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1470

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 283  ctatgatgaagatgcaacctcgatggc 309
            ||||||||||||||||||||| |||||
Sbjct: 1470 ctatgatgaagatgcaacctcaatggc 1444



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 283      ctatgatgaagatgcaacctcgatggc 309
                ||||||||||||||||||||| |||||
Sbjct: 11995184 ctatgatgaagatgcaacctcaatggc 11995210



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>gb|AF358764.1| Oryza sativa clone Osh47 putative apyrase mRNA, partial cds
          Length = 319

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 283 ctatgatgaagatgcaacctcgatggc 309
           ||||||||||||||||||||| |||||
Sbjct: 137 ctatgatgaagatgcaacctcaatggc 111



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 283      ctatgatgaagatgcaacctcgatggc 309
                ||||||||||||||||||||| |||||
Sbjct: 11991947 ctatgatgaagatgcaacctcaatggc 11991973



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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0052J20, complete sequence
          Length = 144969

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 283   ctatgatgaagatgcaacctcgatggc 309
             ||||||||||||||||||||| |||||
Sbjct: 15764 ctatgatgaagatgcaacctcaatggc 15790



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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 283   ctatgatgaagatgcaacctcgatggc 309
             ||||||||||||||||||||| |||||
Sbjct: 96446 ctatgatgaagatgcaacctcaatggc 96472



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>emb|CR749338.1| Homo sapiens mRNA; cDNA DKFZp686O088 (from clone DKFZp686O088)
          Length = 6858

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 275 ggtgctgcctatgatgaagatg 296
           ||||||||||||||||||||||
Sbjct: 385 ggtgctgcctatgatgaagatg 406



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>gb|AF378542.2|AF378542 Homo sapiens bradykinin receptor B2 (BDKRB2) gene, complete cds
          Length = 15152

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 275  ggtgctgcctatgatgaagatg 296
            ||||||||||||||||||||||
Sbjct: 2339 ggtgctgcctatgatgaagatg 2360



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>emb|AL355102.5|CNS05TCL Human chromosome 14 DNA sequence BAC R-404P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201844

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 275   ggtgctgcctatgatgaagatg 296
             ||||||||||||||||||||||
Sbjct: 65647 ggtgctgcctatgatgaagatg 65626



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>gb|L27594.1|HUMBB2R Homo sapiens bradykinin B2 receptor gene sequence
          Length = 7328

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 275  ggtgctgcctatgatgaagatg 296
            ||||||||||||||||||||||
Sbjct: 2716 ggtgctgcctatgatgaagatg 2737



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>emb|AL669971.2| Human DNA sequence from clone RP11-419D21 on chromosome 13 Contains
             part of the ATP8A2 gene for ATPase, aminophospholipid
             transporter-like, Class I, type 8A, member 2 (ML-1
             protein)(IB, ATP, ML-1, ATPIB, DKFZP434B1913), complete
             sequence
          Length = 80077

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    gtaatccttgtgtccttgcgt 108
             |||||||||||||||||||||
Sbjct: 76793 gtaatccttgtgtccttgcgt 76813



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>gb|AY557190.1| Avian orthoreovirus clone ARV 138 non-structural protein muC gene,
           complete cds
          Length = 1996

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 17  tctcatcatgcatcagtacaa 37
           |||||||||||||||||||||
Sbjct: 859 tctcatcatgcatcagtacaa 879



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>gb|BT017796.1| Zea mays clone EL01N0505C10.c mRNA sequence
          Length = 1131

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 gaagatgcaacctcgatggc 309
           ||||||||||||||||||||
Sbjct: 851 gaagatgcaacctcgatggc 832



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>ref|XM_755645.1| Ustilago maydis 521 hypothetical protein (UM04591.1) partial mRNA
          Length = 4335

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  gatgaagatgcaacctcgat 306
            ||||||||||||||||||||
Sbjct: 3894 gatgaagatgcaacctcgat 3875



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>emb|AL132655.13|HSJ806M20 Human DNA sequence from clone RP4-806M20 on chromosome 20 Contains a
              novel pseudogene, the 5' end of the GNAS complex locus and
              a CpG island, complete sequence
          Length = 126586

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    ggggaggggaggctggatga 145
              ||||||||||||||||||||
Sbjct: 118045 ggggaggggaggctggatga 118026



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>emb|AJ251760.1|HSA251760 Homo sapiens NESP55, GNAS1 antisense (partial) and XLalphas (partial)
             genes
          Length = 20924

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ggggaggggaggctggatga 145
             ||||||||||||||||||||
Sbjct: 12169 ggggaggggaggctggatga 12150



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>emb|AL645545.8| Mouse DNA sequence from clone RP23-203J4 on chromosome X, complete
             sequence
          Length = 181243

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   gacaaaatggcaacttcagg 176
             ||||||||||||||||||||
Sbjct: 99449 gacaaaatggcaacttcagg 99468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,914,166
Number of Sequences: 3902068
Number of extensions: 1914166
Number of successful extensions: 33403
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33361
Number of HSP's gapped (non-prelim): 42
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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