| Clone Name | rbags1e17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187539.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1470 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Minus Query: 283 ctatgatgaagatgcaacctcgatggc 309 ||||||||||||||||||||| ||||| Sbjct: 1470 ctatgatgaagatgcaacctcaatggc 1444
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ctatgatgaagatgcaacctcgatggc 309 ||||||||||||||||||||| ||||| Sbjct: 11995184 ctatgatgaagatgcaacctcaatggc 11995210
>gb|AF358764.1| Oryza sativa clone Osh47 putative apyrase mRNA, partial cds Length = 319 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Minus Query: 283 ctatgatgaagatgcaacctcgatggc 309 ||||||||||||||||||||| ||||| Sbjct: 137 ctatgatgaagatgcaacctcaatggc 111
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ctatgatgaagatgcaacctcgatggc 309 ||||||||||||||||||||| ||||| Sbjct: 11991947 ctatgatgaagatgcaacctcaatggc 11991973
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ctatgatgaagatgcaacctcgatggc 309 ||||||||||||||||||||| ||||| Sbjct: 15764 ctatgatgaagatgcaacctcaatggc 15790
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ctatgatgaagatgcaacctcgatggc 309 ||||||||||||||||||||| ||||| Sbjct: 96446 ctatgatgaagatgcaacctcaatggc 96472
>emb|CR749338.1| Homo sapiens mRNA; cDNA DKFZp686O088 (from clone DKFZp686O088) Length = 6858 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 275 ggtgctgcctatgatgaagatg 296 |||||||||||||||||||||| Sbjct: 385 ggtgctgcctatgatgaagatg 406
>gb|AF378542.2|AF378542 Homo sapiens bradykinin receptor B2 (BDKRB2) gene, complete cds Length = 15152 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 275 ggtgctgcctatgatgaagatg 296 |||||||||||||||||||||| Sbjct: 2339 ggtgctgcctatgatgaagatg 2360
>emb|AL355102.5|CNS05TCL Human chromosome 14 DNA sequence BAC R-404P21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201844 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 275 ggtgctgcctatgatgaagatg 296 |||||||||||||||||||||| Sbjct: 65647 ggtgctgcctatgatgaagatg 65626
>gb|L27594.1|HUMBB2R Homo sapiens bradykinin B2 receptor gene sequence Length = 7328 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 275 ggtgctgcctatgatgaagatg 296 |||||||||||||||||||||| Sbjct: 2716 ggtgctgcctatgatgaagatg 2737
>emb|AL669971.2| Human DNA sequence from clone RP11-419D21 on chromosome 13 Contains part of the ATP8A2 gene for ATPase, aminophospholipid transporter-like, Class I, type 8A, member 2 (ML-1 protein)(IB, ATP, ML-1, ATPIB, DKFZP434B1913), complete sequence Length = 80077 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 gtaatccttgtgtccttgcgt 108 ||||||||||||||||||||| Sbjct: 76793 gtaatccttgtgtccttgcgt 76813
>gb|AY557190.1| Avian orthoreovirus clone ARV 138 non-structural protein muC gene, complete cds Length = 1996 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 tctcatcatgcatcagtacaa 37 ||||||||||||||||||||| Sbjct: 859 tctcatcatgcatcagtacaa 879
>gb|BT017796.1| Zea mays clone EL01N0505C10.c mRNA sequence Length = 1131 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gaagatgcaacctcgatggc 309 |||||||||||||||||||| Sbjct: 851 gaagatgcaacctcgatggc 832
>ref|XM_755645.1| Ustilago maydis 521 hypothetical protein (UM04591.1) partial mRNA Length = 4335 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gatgaagatgcaacctcgat 306 |||||||||||||||||||| Sbjct: 3894 gatgaagatgcaacctcgat 3875
>emb|AL132655.13|HSJ806M20 Human DNA sequence from clone RP4-806M20 on chromosome 20 Contains a novel pseudogene, the 5' end of the GNAS complex locus and a CpG island, complete sequence Length = 126586 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggggaggctggatga 145 |||||||||||||||||||| Sbjct: 118045 ggggaggggaggctggatga 118026
>emb|AJ251760.1|HSA251760 Homo sapiens NESP55, GNAS1 antisense (partial) and XLalphas (partial) genes Length = 20924 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggggaggctggatga 145 |||||||||||||||||||| Sbjct: 12169 ggggaggggaggctggatga 12150
>emb|AL645545.8| Mouse DNA sequence from clone RP23-203J4 on chromosome X, complete sequence Length = 181243 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gacaaaatggcaacttcagg 176 |||||||||||||||||||| Sbjct: 99449 gacaaaatggcaacttcagg 99468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,914,166 Number of Sequences: 3902068 Number of extensions: 1914166 Number of successful extensions: 33403 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33361 Number of HSP's gapped (non-prelim): 42 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)