ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ535210.1|OSA535210 Oryza sativa mRNA for SMC2 protein 569 e-159
2dbj|AK103514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 569 e-159
3gb|AY112633.1| Zea mays CL848_1 mRNA sequence 480 e-132
4dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
6dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
7ref|NM_114614.2| Arabidopsis thaliana ATSMC2 AT3G47460 (ATSMC2) ... 133 8e-28
8ref|NM_125635.2| Arabidopsis thaliana SMC2 (STRUCTURAL MAINTENAN... 125 2e-25
9gb|AF306547.1| Arabidopsis thaliana SMC2-1 (SMC2) mRNA, complete... 125 2e-25
10gb|AF271731.1| Arabidopsis thaliana SMC2-like condensin (TITAN3)... 125 2e-25
11gb|AF271730.2| Arabidopsis thaliana SMC2-like condensin (TITAN3)... 86 2e-13
12dbj|AB015469.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 86 2e-13
13ref|XM_585705.2| PREDICTED: Bos taurus similar to Structural mai... 60 9e-06
14emb|AL833191.1|HSM804502 Homo sapiens mRNA; cDNA DKFZp667M185 (f... 60 9e-06
15ref|NM_006444.1| Homo sapiens SMC2 structural maintenance of chr... 60 9e-06
16dbj|AK001485.1| Homo sapiens cDNA FLJ10623 fis, clone NT2RP20055... 60 9e-06
17gb|AF113673.1|AF113673 Homo sapiens clone FLB1433 PRO0324 mRNA, ... 60 9e-06
18tpe|BN000163.1|HSA000163 TPA: TPA_inf: Homo sapiens mRNA for SMC... 60 9e-06
19gb|AF092563.1|AF092563 Homo sapiens chromosome-associated protei... 60 9e-06
20emb|AJ420415.1|HSA420415 Homo sapiens mRNA full length insert cD... 60 9e-06
21ref|XM_538759.2| PREDICTED: Canis familiaris similar to Structur... 58 4e-05
22emb|AL354938.12| Human DNA sequence from clone RP11-86L19 on chr... 58 4e-05
23ref|XM_505843.1| Yarrowia lipolytica CLIB122, YALI0F24783g predi... 56 1e-04
24emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 56 1e-04
25gb|AY808362.1| Schistosoma japonicum SJCHGC04631 protein mRNA, p... 52 0.002
26dbj|AB168882.1| Macaca fascicularis testis cDNA, clone: QtsA-155... 52 0.002
27gb|U13674.1|XLU13674 Xenopus laevis (XCAP-E) mRNA, complete cds 52 0.002
28emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC... 46 0.14
29gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 46 0.14
30ref|NM_211964.1| Eremothecium gossypii AGR236Wp (AGR236W), mRNA 46 0.14
31gb|AC121154.3| Homo sapiens BAC clone CTD-2325B11 from 4, comple... 44 0.56
32gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 42 2.2
33gb|AC148136.3| Callicebus moloch clone LB5-135M4, complete sequence 42 2.2
34ref|XM_968933.1| PREDICTED: Tribolium castaneum similar to Struc... 42 2.2
35gb|AC146885.3| Callithrix jacchus clone CH259-349L5, complete se... 42 2.2
36dbj|AP002051.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.2
37emb|BX530082.6| Zebrafish DNA sequence from clone DKEY-205C7 in ... 42 2.2
38dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete ge... 42 2.2
39gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 42 2.2
40emb|AL732619.13| Mouse DNA sequence from clone RP23-122I3 on chr... 42 2.2
41gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome 40 8.7
42gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome... 40 8.7
43gb|AC158548.10| Mus musculus chromosome 5, clone RP23-258F17, co... 40 8.7
44ref|XM_584810.2| PREDICTED: Bos taurus similar to retinol dehydr... 40 8.7
45gb|BC062164.1| Mus musculus snail homolog 2 (Drosophila), mRNA (... 40 8.7
46gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mit... 40 8.7
47gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion... 40 8.7
48gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion... 40 8.7
49gb|AC116383.11| Mus musculus chromosome 5, clone RP23-15P21, com... 40 8.7
50ref|XM_660830.1| Cryptosporidium hominis TU502 SMC2 protein (Chr... 40 8.7
51gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-1... 40 8.7
52gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA... 40 8.7
53gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar N... 40 8.7
54emb|AL161714.8| Human DNA sequence from clone RP11-184E24 on chr... 40 8.7
55gb|AC140280.3| Mus musculus BAC clone RP23-345I5 from chromosome... 40 8.7
56gb|AC027575.13| Homo sapiens chromosome 18, clone RP11-162A12, c... 40 8.7
57gb|AC154513.2| Mus musculus BAC clone RP24-72F2 from chromosome ... 40 8.7
58dbj|AK133968.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 8.7
59gb|U79550.1|MMU79550 Mus musculus Slug zinc finger protein (Slug... 40 8.7
60dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
61emb|BX833125.1|CNS09ZBU Arabidopsis thaliana Full-length cDNA Co... 40 8.7
62gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, comple... 40 8.7
63gb|AC139085.3| Homo sapiens chromosome 18, clone XXfos-81053C2, ... 40 8.7
64ref|NM_011415.2| Mus musculus snail homolog 2 (Drosophila) (Snai... 40 8.7
65emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 i... 40 8.7
66gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
67emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.7
68emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.7
69dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochond... 40 8.7
70emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chr... 40 8.7 
>emb|AJ535210.1|OSA535210 Oryza sativa mRNA for SMC2 protein
          Length = 3528

 Score =  569 bits (287), Expect = e-159
 Identities = 407/447 (91%)
 Strand = Plus / Minus

                                                                        
Query: 193  gaagggactgttcgtgtcacagtggacaccccatccacaaatttcgttcggaatatcacg 252
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 3515 gaagggaccgttcgtgtcacagtggacaccccatcaacaaatttcgttcggaatatcaca 3456

                                                                        
Query: 253  ttggcgttgttgaacataccctcttttagcgacacaacaatgaactgggactgtggaaaa 312
            || |||||||||||||| ||||||||||| || ||||| ||||||||||| || ||||||
Sbjct: 3455 tttgcgttgttgaacatgccctcttttagtgagacaactatgaactgggagtgcggaaaa 3396

                                                                        
Query: 313  tgcgcctttatcattctaccaatgttttgggtatggctcagatcaagggcagcatcaacc 372
            |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 3395 tgcgccttgatcattctaccaatgttttgtgtatggctcagatctagggcagcatcaacc 3336

                                                                        
Query: 373  tcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagactaaga 432
            ||||||||||| ||||| || ||||| || |||||||||| |||||| ||||||||||||
Sbjct: 3335 tcatctaatatataaagtggtgcaggtttgaaaagaagtagcgccaggataagactaaga 3276

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            || || ||||| || || ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 3275 gcgaggagggaccgttgccctccactaagttcagataaagattgtttccaaactgttcca 3216

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || 
Sbjct: 3215 aatgccacccgaacttcaagaccatccaaaaaagtaccaccttcaggaggatcaagtttg 3156

                                                                        
Query: 553  gccattgtaccaggtagaagagtaccgaatatagacccaaaatccttgttaactttgagc 612
            |||||||| ||||||| ||| |||| ||||||||| |||||||||||||| ||||| |||
Sbjct: 3155 gccattgtgccaggtaaaagtgtactgaatatagatccaaaatccttgtttactttaagc 3096

                                       
Query: 613  catgtaactttcaaggtctctttcttc 639
            ||||| |||||||||||||||||||||
Sbjct: 3095 catgtgactttcaaggtctctttcttc 3069
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>dbj|AK103514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131G15, full
            insert sequence
          Length = 4093

 Score =  569 bits (287), Expect = e-159
 Identities = 407/447 (91%)
 Strand = Plus / Minus

                                                                        
Query: 193  gaagggactgttcgtgtcacagtggacaccccatccacaaatttcgttcggaatatcacg 252
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 3640 gaagggaccgttcgtgtcacagtggacaccccatcaacaaatttcgttcggaatatcaca 3581

                                                                        
Query: 253  ttggcgttgttgaacataccctcttttagcgacacaacaatgaactgggactgtggaaaa 312
            || |||||||||||||| ||||||||||| || ||||| ||||||||||| || ||||||
Sbjct: 3580 tttgcgttgttgaacatgccctcttttagtgagacaactatgaactgggagtgcggaaaa 3521

                                                                        
Query: 313  tgcgcctttatcattctaccaatgttttgggtatggctcagatcaagggcagcatcaacc 372
            |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 3520 tgcgccttgatcattctaccaatgttttgtgtatggctcagatctagggcagcatcaacc 3461

                                                                        
Query: 373  tcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagactaaga 432
            ||||||||||| ||||| || ||||| || |||||||||| |||||| ||||||||||||
Sbjct: 3460 tcatctaatatataaagtggtgcaggtttgaaaagaagtagcgccaggataagactaaga 3401

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            || || ||||| || || ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 3400 gcgaggagggaccgttgccctccactaagttcagataaagattgtttccaaactgttcca 3341

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || 
Sbjct: 3340 aatgccacccgaacttcaagaccatccaaaaaagtaccaccttcaggaggatcaagtttg 3281

                                                                        
Query: 553  gccattgtaccaggtagaagagtaccgaatatagacccaaaatccttgttaactttgagc 612
            |||||||| ||||||| ||| |||| ||||||||| |||||||||||||| ||||| |||
Sbjct: 3280 gccattgtgccaggtaaaagtgtactgaatatagatccaaaatccttgtttactttaagc 3221

                                       
Query: 613  catgtaactttcaaggtctctttcttc 639
            ||||| |||||||||||||||||||||
Sbjct: 3220 catgtgactttcaaggtctctttcttc 3194
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>gb|AY112633.1| Zea mays CL848_1 mRNA sequence
          Length = 4094

 Score =  480 bits (242), Expect = e-132
 Identities = 384/435 (88%)
 Strand = Plus / Minus

                                                                        
Query: 180  tcatttctgtttcgaagggactgttcgtgtcacagtggacaccccatccacaaatttcgt 239
            |||| ||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||
Sbjct: 3653 tcatctctgtttcgaaggcactgttcgtgtcacggtggacacaccatcaacaaattttgt 3594

                                                                        
Query: 240  tcggaatatcacgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||| |||||||| ||||||||||||||||||||||||||||  || ||||| ||||||||
Sbjct: 3593 tcgaaatatcacattggcgttgttgaacataccctcttttaaagagacaactatgaactg 3534

                                                                        
Query: 300  ggactgtggaaaatgcgcctttatcattctaccaatgttttgggtatggctcagatcaag 359
             || || |||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 3533 agagtgcggaaaatgagccttgatcattctaccaatgttttgagtgtggctcagatcaag 3474

                                                                        
Query: 360  ggcagcatcaacctcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccag 419
             |||||||||||||| || ||||||||||| || ||||| ||     |||| |  |||||
Sbjct: 3473 agcagcatcaacctcgtccaatatgtaaagtggtgcaggtttnnnnngaagcagagccag 3414

                                                                        
Query: 420  aataagactaagagcaagaagggatcgctgtcctccactaagttcagacaaagattgctt 479
             |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 3413 gataagactaagagcaagaagggatcgttgtcctccactaagttcagacagagactgctt 3354

                                                                        
Query: 480  ccagactgttccaaatgccacccgaacttcaagaccatccaagaaggtaccaccttcagg 539
            ||| ||||| ||||||||||| ||||||||||||||||||      ||||||||||| ||
Sbjct: 3353 ccaaactgtcccaaatgccacacgaacttcaagaccatccnnnnnngtaccaccttctgg 3294

                                                                        
Query: 540  aggatcaagctttgccattgtaccaggtagaagagtaccgaatatagacccaaaatcctt 599
            ||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 3293 aggatcaagttttgccattgtaccaggtaaaagagtactgaatatagacccgaaatcctt 3234

                           
Query: 600  gttaactttgagcca 614
            |||||||||||||||
Sbjct: 3233 gttaactttgagcca 3219
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>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065G12
          Length = 165006

 Score =  262 bits (132), Expect = 1e-66
 Identities = 204/228 (89%)
 Strand = Plus / Plus

                                                                          
Query: 370    acctcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagacta 429
              |||||||||||||| ||||| || ||||| || |||||||||| |||||| |||||||||
Sbjct: 162141 acctcatctaatatataaagtggtgcaggtttgaaaagaagtagcgccaggataagacta 162200

                                                                          
Query: 430    agagcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgtt 489
              ||||| || ||||| || || ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 162201 agagcgaggagggaccgttgccctccactaagttcagataaagattgtttccaaactgtt 162260

                                                                          
Query: 490    ccaaatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagc 549
              |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| 
Sbjct: 162261 ccaaatgccacccgaacttcaagaccatccaaaaaagtaccaccttcaggaggatcaagt 162320

                                                              
Query: 550    tttgccattgtaccaggtagaagagtaccgaatatagacccaaaatcc 597
              || |||||||| ||||||| ||| |||| ||||||||| |||||||||
Sbjct: 162321 ttggccattgtgccaggtaaaagtgtactgaatatagatccaaaatcc 162368



 Score =  149 bits (75), Expect = 1e-32
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                          
Query: 193    gaagggactgttcgtgtcacagtggacaccccatccacaaatttcgttcggaatatcacg 252
              |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 161455 gaagggaccgttcgtgtcacagtggacaccccatcaacaaatttcgttcggaatatcaca 161514

                                                             
Query: 253    ttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
              || |||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct: 161515 tttgcgttgttgaacatgccctcttttagtgagacaactatgaactg 161561



 Score =  113 bits (57), Expect = 7e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                          
Query: 297    ctgggactgtggaaaatgcgcctttatcattctaccaatgttttgggtatggctcagatc 356
              |||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 161706 ctgggagtgcggaaaatgcgccttgatcattctaccaatgttttgtgtatggctcagatc 161765

                               
Query: 357    aagggcagcatcaacct 373
               ||||||||||||||||
Sbjct: 161766 tagggcagcatcaacct 161782



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                         
Query: 597    cttgttaactttgagccatgtaactttcaaggtctctttcttc 639
              |||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 162497 cttgtttactttaagccatgtgactttcaaggtctctttcttc 162539
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  262 bits (132), Expect = 1e-66
 Identities = 204/228 (89%)
 Strand = Plus / Plus

                                                                            
Query: 370      acctcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagacta 429
                |||||||||||||| ||||| || ||||| || |||||||||| |||||| |||||||||
Sbjct: 39360435 acctcatctaatatataaagtggtgcaggtttgaaaagaagtagcgccaggataagacta 39360494

                                                                            
Query: 430      agagcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgtt 489
                ||||| || ||||| || || ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 39360495 agagcgaggagggaccgttgccctccactaagttcagataaagattgtttccaaactgtt 39360554

                                                                            
Query: 490      ccaaatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagc 549
                |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| 
Sbjct: 39360555 ccaaatgccacccgaacttcaagaccatccaaaaaagtaccaccttcaggaggatcaagt 39360614

                                                                
Query: 550      tttgccattgtaccaggtagaagagtaccgaatatagacccaaaatcc 597
                || |||||||| ||||||| ||| |||| ||||||||| |||||||||
Sbjct: 39360615 ttggccattgtgccaggtaaaagtgtactgaatatagatccaaaatcc 39360662



 Score =  149 bits (75), Expect = 1e-32
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                            
Query: 193      gaagggactgttcgtgtcacagtggacaccccatccacaaatttcgttcggaatatcacg 252
                |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 39359749 gaagggaccgttcgtgtcacagtggacaccccatcaacaaatttcgttcggaatatcaca 39359808

                                                               
Query: 253      ttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
                || |||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct: 39359809 tttgcgttgttgaacatgccctcttttagtgagacaactatgaactg 39359855



 Score =  113 bits (57), Expect = 7e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                            
Query: 297      ctgggactgtggaaaatgcgcctttatcattctaccaatgttttgggtatggctcagatc 356
                |||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 39360000 ctgggagtgcggaaaatgcgccttgatcattctaccaatgttttgtgtatggctcagatc 39360059

                                 
Query: 357      aagggcagcatcaacct 373
                 ||||||||||||||||
Sbjct: 39360060 tagggcagcatcaacct 39360076



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                           
Query: 597      cttgttaactttgagccatgtaactttcaaggtctctttcttc 639
                |||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 39360791 cttgtttactttaagccatgtgactttcaaggtctctttcttc 39360833
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>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0551C06
          Length = 149829

 Score =  262 bits (132), Expect = 1e-66
 Identities = 204/228 (89%)
 Strand = Plus / Plus

                                                                          
Query: 370    acctcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagacta 429
              |||||||||||||| ||||| || ||||| || |||||||||| |||||| |||||||||
Sbjct: 141681 acctcatctaatatataaagtggtgcaggtttgaaaagaagtagcgccaggataagacta 141740

                                                                          
Query: 430    agagcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgtt 489
              ||||| || ||||| || || ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 141741 agagcgaggagggaccgttgccctccactaagttcagataaagattgtttccaaactgtt 141800

                                                                          
Query: 490    ccaaatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagc 549
              |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| 
Sbjct: 141801 ccaaatgccacccgaacttcaagaccatccaaaaaagtaccaccttcaggaggatcaagt 141860

                                                              
Query: 550    tttgccattgtaccaggtagaagagtaccgaatatagacccaaaatcc 597
              || |||||||| ||||||| ||| |||| ||||||||| |||||||||
Sbjct: 141861 ttggccattgtgccaggtaaaagtgtactgaatatagatccaaaatcc 141908



 Score =  149 bits (75), Expect = 1e-32
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                          
Query: 193    gaagggactgttcgtgtcacagtggacaccccatccacaaatttcgttcggaatatcacg 252
              |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 140995 gaagggaccgttcgtgtcacagtggacaccccatcaacaaatttcgttcggaatatcaca 141054

                                                             
Query: 253    ttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
              || |||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct: 141055 tttgcgttgttgaacatgccctcttttagtgagacaactatgaactg 141101



 Score =  113 bits (57), Expect = 7e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                          
Query: 297    ctgggactgtggaaaatgcgcctttatcattctaccaatgttttgggtatggctcagatc 356
              |||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 141246 ctgggagtgcggaaaatgcgccttgatcattctaccaatgttttgtgtatggctcagatc 141305

                               
Query: 357    aagggcagcatcaacct 373
               ||||||||||||||||
Sbjct: 141306 tagggcagcatcaacct 141322



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                         
Query: 597    cttgttaactttgagccatgtaactttcaaggtctctttcttc 639
              |||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 142037 cttgtttactttaagccatgtgactttcaaggtctctttcttc 142079
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>ref|NM_114614.2| Arabidopsis thaliana ATSMC2 AT3G47460 (ATSMC2) mRNA, complete cds
          Length = 4091

 Score =  133 bits (67), Expect = 8e-28
 Identities = 319/403 (79%)
 Strand = Plus / Minus

                                                                        
Query: 223  ccatccacaaatttcgttcggaatatcacgttggcgttgttgaacataccctcttttagc 282
            |||||||| ||||| |||||||| |  || | ||||||| ||||||| || ||||| || 
Sbjct: 3476 ccatccacgaattttgttcggaagagaacatcggcgttgctgaacattccttctttcagt 3417

                                                                        
Query: 283  gacacaacaatgaactgggactgtggaaaatgcgcctttatcattctaccaatgttttgg 342
            || || ||||||||||| || ||||| ||||| |  ||||||||||| || ||||| || 
Sbjct: 3416 gaaaccacaatgaactgtgaatgtgggaaatgagattttatcattcttcctatgttctgt 3357

                                                                        
Query: 343  gtatggctcagatcaagggcagcatcaacctcatctaatatgtaaagcggcgcaggctta 402
            || ||||| |||||||| || ||||||||||||||||| || ||||  || || ||||||
Sbjct: 3356 gtgtggcttagatcaagagctgcatcaacctcatctaagatataaataggagctggctta 3297

                                                                        
Query: 403  aaaagaagtaacgccagaataagactaagagcaagaagggatcgctgtcctccactaagt 462
            || || || |||||||| || | |   || |||||||| ||||  || |||||||| |||
Sbjct: 3296 aagagtagcaacgccaggattaaagatagtgcaagaagagatctttgccctccacttagt 3237

                                                                        
Query: 463  tcagacaaagattgcttccagactgttccaaatgccacccgaacttcaagaccatccaag 522
            ||||| ||||| || ||||||||   |||||| || || || || ||||||||||| | |
Sbjct: 3236 tcagataaagactgtttccagacatctccaaaagcaacacggacctcaagaccatcaagg 3177

                                                                        
Query: 523  aaggtaccaccttcaggaggatcaagctttgccattgtaccaggtagaagagtaccgaat 582
            || ||||| || || ||||| || |  |||| ||| || |||||||| |||||    || 
Sbjct: 3176 aaagtacctccctctggaggttctaattttgacatggtgccaggtagtagagttgaaaag 3117

                                                       
Query: 583  atagacccaaaatccttgttaactttgagccatgtaactttca 625
            || || |||||||||| ||||||||| | ||||||||||||||
Sbjct: 3116 atggaaccaaaatcctggttaactttaacccatgtaactttca 3074
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>ref|NM_125635.2| Arabidopsis thaliana SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)
            AT5G62410 (SMC2) mRNA, complete cds
          Length = 3763

 Score =  125 bits (63), Expect = 2e-25
 Identities = 303/383 (79%)
 Strand = Plus / Minus

                                                                        
Query: 253  ttggcgttgttgaacataccctcttttagcgacacaacaatgaactgggactgtggaaaa 312
            ||||| ||||||||||| || ||||| ||||| || || || ||||| || || || |||
Sbjct: 3501 ttggcattgttgaacattccttctttcagcgaaaccacgataaactgcgagtgagggaaa 3442

                                                                        
Query: 313  tgcgcctttatcattctaccaatgttttgggtatggctcagatcaagggcagcatcaacc 372
            || ||  |||||||||| || ||||| || || || || |||||||| || |||||||||
Sbjct: 3441 tgagctcttatcattcttcctatgttctgtgtgtgactgagatcaagagctgcatcaacc 3382

                                                                        
Query: 373  tcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagactaaga 432
            ||||||||||| ||||| || || || || || ||||| || ||||  || ||    || 
Sbjct: 3381 tcatctaatatataaagaggagccggtttgaagagaagcaatgccaatattagtgatagc 3322

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            |||||||| ||||  || |||||||| ||||| || ||||| |||||||||||| |||||
Sbjct: 3321 gcaagaagagatctttgccctccactgagttctgataaagactgcttccagacttttcca 3262

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            || || || || || ||||||||||| | |||| ||||  |||||||||| || || |||
Sbjct: 3261 aaggcaacacgcacctcaagaccatcaaggaagttaccgtcttcaggaggttctagtttt 3202

                                                                        
Query: 553  gccattgtaccaggtagaagagtaccgaatatagacccaaaatccttgttaactttgagc 612
            ||||| || |||||||| |||||    || || || || ||||||| ||||||||| | |
Sbjct: 3201 gccatggtgccaggtagtagagttgaaaagattgatccgaaatcctggttaactttaacc 3142

                                   
Query: 613  catgtaactttcaaggtctcttt 635
            || |||||||||| ||| |||||
Sbjct: 3141 caagtaactttcagggtttcttt 3119
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>gb|AF306547.1| Arabidopsis thaliana SMC2-1 (SMC2) mRNA, complete cds
          Length = 3528

 Score =  125 bits (63), Expect = 2e-25
 Identities = 303/383 (79%)
 Strand = Plus / Minus

                                                                        
Query: 253  ttggcgttgttgaacataccctcttttagcgacacaacaatgaactgggactgtggaaaa 312
            ||||| ||||||||||| || ||||| ||||| || || || ||||| || || || |||
Sbjct: 3455 ttggcattgttgaacattccttctttcagcgaaaccacgataaactgcgagtgagggaaa 3396

                                                                        
Query: 313  tgcgcctttatcattctaccaatgttttgggtatggctcagatcaagggcagcatcaacc 372
            || ||  |||||||||| || ||||| || || || || |||||||| || |||||||||
Sbjct: 3395 tgagctcttatcattcttcctatgttctgtgtgtgactgagatcaagagctgcatcaacc 3336

                                                                        
Query: 373  tcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagactaaga 432
            ||||||||||| ||||| || || || || || ||||| || ||||  || ||    || 
Sbjct: 3335 tcatctaatatataaagaggagccggtttgaagagaagcaatgccaatattagtgatagc 3276

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            |||||||| ||||  || |||||||| ||||| || ||||| |||||||||||| |||||
Sbjct: 3275 gcaagaagagatctttgccctccactgagttctgataaagactgcttccagacttttcca 3216

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            || || || || || ||||||||||| | |||| ||||  |||||||||| || || |||
Sbjct: 3215 aaggcaacacgcacctcaagaccatcaaggaagttaccgtcttcaggaggttctagtttt 3156

                                                                        
Query: 553  gccattgtaccaggtagaagagtaccgaatatagacccaaaatccttgttaactttgagc 612
            ||||| || |||||||| |||||    || || || || ||||||| ||||||||| | |
Sbjct: 3155 gccatggtgccaggtagtagagttgaaaagattgatccgaaatcctggttaactttaacc 3096

                                   
Query: 613  catgtaactttcaaggtctcttt 635
            || |||||||||| ||| |||||
Sbjct: 3095 caagtaactttcagggtttcttt 3073
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>gb|AF271731.1| Arabidopsis thaliana SMC2-like condensin (TITAN3) mRNA, complete cds
          Length = 3769

 Score =  125 bits (63), Expect = 2e-25
 Identities = 303/383 (79%)
 Strand = Plus / Minus

                                                                        
Query: 253  ttggcgttgttgaacataccctcttttagcgacacaacaatgaactgggactgtggaaaa 312
            ||||| ||||||||||| || ||||| ||||| || || || ||||| || || || |||
Sbjct: 3507 ttggcattgttgaacattccttctttcagcgaaaccacgataaactgcgagtgagggaaa 3448

                                                                        
Query: 313  tgcgcctttatcattctaccaatgttttgggtatggctcagatcaagggcagcatcaacc 372
            || ||  |||||||||| || ||||| || || || || |||||||| || |||||||||
Sbjct: 3447 tgagctcttatcattcttcctatgttctgtgtgtgactgagatcaagagctgcatcaacc 3388

                                                                        
Query: 373  tcatctaatatgtaaagcggcgcaggcttaaaaagaagtaacgccagaataagactaaga 432
            ||||||||||| ||||| || || || || || ||||| || ||||  || ||    || 
Sbjct: 3387 tcatctaatatataaagaggagccggtttgaagagaagcaatgccaatattagtgatagc 3328

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            |||||||| ||||  || |||||||| ||||| || ||||| |||||||||||| |||||
Sbjct: 3327 gcaagaagagatctttgccctccactgagttctgataaagactgcttccagacttttcca 3268

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            || || || || || ||||||||||| | |||| ||||  |||||||||| || || |||
Sbjct: 3267 aaggcaacacgcacctcaagaccatcaaggaagttaccgtcttcaggaggttctagtttt 3208

                                                                        
Query: 553  gccattgtaccaggtagaagagtaccgaatatagacccaaaatccttgttaactttgagc 612
            ||||| || |||||||| |||||    || || || || ||||||| ||||||||| | |
Sbjct: 3207 gccatggtgccaggtagtagagttgaaaagattgatccgaaatcctggttaactttaacc 3148

                                   
Query: 613  catgtaactttcaaggtctcttt 635
            || |||||||||| ||| |||||
Sbjct: 3147 caagtaactttcagggtttcttt 3125
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>gb|AF271730.2| Arabidopsis thaliana SMC2-like condensin (TITAN3) gene, complete cds
          Length = 9413

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Minus

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            |||||||| ||||  || |||||||| ||||| || ||||| |||||||||||| |||||
Sbjct: 7210 gcaagaagagatctttgccctccactgagttctgataaagactgcttccagacttttcca 7151

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            || || || || || ||||||||||| | |||| ||||  |||||||||| || || |||
Sbjct: 7150 aaggcaacacgcacctcaagaccatcaaggaagttaccgtcttcaggaggttctagtttt 7091

                                   
Query: 553  gccattgtaccaggtagaagagt 575
            ||||| || |||||||| |||||
Sbjct: 7090 gccatggtgccaggtagtagagt 7068
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>dbj|AB015469.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19B1
          Length = 69927

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Minus

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            |||||||| ||||  || |||||||| ||||| || ||||| |||||||||||| |||||
Sbjct: 1626 gcaagaagagatctttgccctccactgagttctgataaagactgcttccagacttttcca 1567

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            || || || || || ||||||||||| | |||| ||||  |||||||||| || || |||
Sbjct: 1566 aaggcaacacgcacctcaagaccatcaaggaagttaccgtcttcaggaggttctagtttt 1507

                                   
Query: 553  gccattgtaccaggtagaagagt 575
            ||||| || |||||||| |||||
Sbjct: 1506 gccatggtgccaggtagtagagt 1484
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>ref|XM_585705.2| PREDICTED: Bos taurus similar to Structural maintenance of chromosome
            2-like 1 protein (Chromosome-associated protein E)
            (hCAP-E) (XCAP-E homolog) (LOC539217), mRNA
          Length = 5399

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||| ||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 3509 acgtttgcgttgttgaacataccttcttttagggataccacaatgaactg 3460
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>emb|AL833191.1|HSM804502 Homo sapiens mRNA; cDNA DKFZp667M185 (from clone DKFZp667M185)
          Length = 6002

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||| || |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 3753 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaactg 3704
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>ref|NM_006444.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1
            (yeast) (SMC2L1), mRNA
          Length = 4166

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||| || |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 3678 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaactg 3629
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>dbj|AK001485.1| Homo sapiens cDNA FLJ10623 fis, clone NT2RP2005520, highly similar to
            Homo sapiens chromosome-associated protein-E mRNA
          Length = 4266

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||| || |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 3800 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaactg 3751
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>gb|AF113673.1|AF113673 Homo sapiens clone FLB1433 PRO0324 mRNA, complete cds
          Length = 1435

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 250 acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
           ||||| || |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 941 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaactg 892
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>tpe|BN000163.1|HSA000163 TPA: TPA_inf: Homo sapiens mRNA for SMC2 protein
          Length = 3594

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||| || |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 3464 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaactg 3415
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>gb|AF092563.1|AF092563 Homo sapiens chromosome-associated protein-E (hCAP-E) mRNA, complete
            cds
          Length = 4166

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||| || |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 3678 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaactg 3629
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>emb|AJ420415.1|HSA420415 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1286919
          Length = 1262

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 250 acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
           ||||| || |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 770 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaactg 721
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>ref|XM_538759.2| PREDICTED: Canis familiaris similar to Structural maintenance of
            chromosome 2-like 1 protein (Chromosome-associated
            protein E) (hCAP-E) (XCAP-E homolog), transcript variant
            1 (LOC481637), mRNA
          Length = 3588

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 259  ttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 3455 ttgttgaacataccctcctttagtgacacgacaatgaactg 3415
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>emb|AL354938.12| Human DNA sequence from clone RP11-86L19 on chromosome 9 Contains the
            3' end of the SMC2L1 gene for SMC2 structural maintenance
            of chromosomes 2-like 1 (yeast) (CAPE, CAP-E, hCAP-E), a
            novel pseudogene and a CpG island, complete sequence
          Length = 179738

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaact 298
            ||||| || |||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 6017 acgtttgcattgttgaacataccttcttttagtgacaccacaatgaact 5969
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>ref|XM_505843.1| Yarrowia lipolytica CLIB122, YALI0F24783g predicted mRNA
          Length = 3519

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 252  gttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            |||||||||| |||| |  |||||||| ||||||||||||||||||||
Sbjct: 3465 gttggcgttgctgaagaatccctctttaagcgacacaacaatgaactg 3418
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                               
Query: 252     gttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
               |||||||||| |||| |  |||||||| ||||||||||||||||||||
Sbjct: 3214090 gttggcgttgctgaagaatccctctttaagcgacacaacaatgaactg 3214137
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>gb|AY808362.1| Schistosoma japonicum SJCHGC04631 protein mRNA, partial cds
          Length = 1136

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 223 ccatccacaaatttcgttcggaatatcacgttggcgttgttgaacataccctcttttagc 282
           ||||||||||||||||||  |||||  ||||| ||||| |||||||| || ||||| |||
Sbjct: 986 ccatccacaaatttcgttttgaatagtacgttagcgttattgaacattccatctttgagc 927

             
Query: 283 ga 284
           ||
Sbjct: 926 ga 925
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>dbj|AB168882.1| Macaca fascicularis testis cDNA, clone: QtsA-15550, similar to human
            SMC2 structural maintenance of chromosomes 2-like
            1(yeast) (SMC2L1), mRNA, RefSeq: NM_006444.1
          Length = 3977

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 250  acgttggcgttgttgaacataccctcttttagcgacacaacaatgaactg 299
            ||||| || |||||||||||||| |||||||| ||||| || ||||||||
Sbjct: 3773 acgtttgcattgttgaacataccttcttttagtgacaccacgatgaactg 3724
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>gb|U13674.1|XLU13674 Xenopus laevis (XCAP-E) mRNA, complete cds
          Length = 4100

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 358  agggcagcatcaacctcatctaatatgtaaagcggcgcaggcttaaaaag 407
            ||||||||||||||||||||||| ||||| |  || ||||| ||||||||
Sbjct: 3407 agggcagcatcaacctcatctaagatgtagattggggcaggtttaaaaag 3358



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 253  ttggcgttgttgaacataccctcttttagcgacacaacaatgaactggga 302
            ||||||||||| ||||| || || || || ||||| ||||||||||||||
Sbjct: 3512 ttggcgttgttaaacatgccatccttcagtgacaccacaatgaactggga 3463
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>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2
          Length = 101154

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 319  tttatcattctaccaatgttttgggtatggctcagatcaagggcagcatcaacct 373
            ||||||||||| || ||||| || || ||||| |||||||| || ||||||||||
Sbjct: 6280 tttatcattcttcctatgttctgtgtgtggcttagatcaagagctgcatcaacct 6226



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 113/143 (79%)
 Strand = Plus / Minus

                                                                        
Query: 433  gcaagaagggatcgctgtcctccactaagttcagacaaagattgcttccagactgttcca 492
            |||||||| ||||  || |||||||| |||||||| ||||| || ||||||||   ||||
Sbjct: 6006 gcaagaagagatctttgccctccacttagttcagataaagactgtttccagacatctcca 5947

                                                                        
Query: 493  aatgccacccgaacttcaagaccatccaagaaggtaccaccttcaggaggatcaagcttt 552
            || || || || || ||||||||||| | ||| ||||| || || ||||| || |  |||
Sbjct: 5946 aaagcaacacggacctcaagaccatcaaggaaagtacctccctctggaggttctaatttt 5887

                                   
Query: 553  gccattgtaccaggtagaagagt 575
            | ||| || |||||||| |||||
Sbjct: 5886 gacatggtgccaggtagtagagt 5864



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 223  ccatccacaaatttcgttcggaatatcacgttggcgttgttgaacataccctcttttagc 282
            |||||||| ||||| |||||||| |  || | ||||||| ||||||| || ||||| || 
Sbjct: 6486 ccatccacgaattttgttcggaagagaacatcggcgttgctgaacattccttctttcagt 6427

                             
Query: 283  gacacaacaatgaactg 299
            || || |||||||||||
Sbjct: 6426 gaaaccacaatgaactg 6410
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
               complete sequence
          Length = 1476513

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                              
Query: 331     ccaatgttttgggtatggctcagatcaagggcagcatcaacctcatc 377
               ||||||||||| || ||||||||||| || || |||||||| |||||
Sbjct: 1193230 ccaatgttttgtgtgtggctcagatctagcgcggcatcaacttcatc 1193184
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>ref|NM_211964.1| Eremothecium gossypii AGR236Wp (AGR236W), mRNA
          Length = 3513

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 331  ccaatgttttgggtatggctcagatcaagggcagcatcaacctcatc 377
            ||||||||||| || ||||||||||| || || |||||||| |||||
Sbjct: 3380 ccaatgttttgtgtgtggctcagatctagcgcggcatcaacttcatc 3334
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>gb|AC121154.3| Homo sapiens BAC clone CTD-2325B11 from 4, complete sequence
          Length = 92345

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 85    aatccaactaccacagaacatt 106
             ||||||||||||||||||||||
Sbjct: 57290 aatccaactaccacagaacatt 57311
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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 293     tgaactgggactgtggaaaat 313
               |||||||||||||||||||||
Sbjct: 1319295 tgaactgggactgtggaaaat 1319315
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>gb|AC148136.3| Callicebus moloch clone LB5-135M4, complete sequence
          Length = 121700

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tgaactgggactgtggaaaat 313
             |||||||||||||||||||||
Sbjct: 96521 tgaactgggactgtggaaaat 96541
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>ref|XM_968933.1| PREDICTED: Tribolium castaneum similar to Structural maintenance of
            chromosome 2-like 1 protein (Chromosome-associated
            protein E) (hCAP-E) (XCAP-E homolog) (LOC662857), mRNA
          Length = 3471

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 263  tgaacataccctcttttagcgacacaacaatgaactg 299
            ||||||| || ||||| |||||||| |||||||||||
Sbjct: 3388 tgaacattccgtctttgagcgacaccacaatgaactg 3352
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>gb|AC146885.3| Callithrix jacchus clone CH259-349L5, complete sequence
          Length = 213940

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 293    tgaactgggactgtggaaaat 313
              |||||||||||||||||||||
Sbjct: 164387 tgaactgggactgtggaaaat 164407
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>dbj|AP002051.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZF16
          Length = 67776

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 581  atatagacccaaaatccttgt 601
            |||||||||||||||||||||
Sbjct: 8698 atatagacccaaaatccttgt 8718



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 582  tatagacccaaaatccttgt 601
            ||||||||||||||||||||
Sbjct: 9769 tatagacccaaaatccttgt 9788
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>emb|BX530082.6| Zebrafish DNA sequence from clone DKEY-205C7 in linkage group 4,
            complete sequence
          Length = 4649

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 393  cgcaggcttaaaaagaagtaa 413
            |||||||||||||||||||||
Sbjct: 2330 cgcaggcttaaaaagaagtaa 2350
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>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome
          Length = 452528

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 418  agaataagactaagagcaagaaggg 442
            ||||||||| |||||||||||||||
Sbjct: 9953 agaataagaataagagcaagaaggg 9929
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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 293     tgaactgggactgtggaaaat 313
               |||||||||||||||||||||
Sbjct: 1306522 tgaactgggactgtggaaaat 1306542
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>emb|AL732619.13| Mouse DNA sequence from clone RP23-122I3 on chromosome 4, complete
              sequence
          Length = 225086

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                               
Query: 250    acgttggcgttgttgaacataccctcttttagcgacacaacaatgaact 298
              ||||| || |||||||||||||| ||||| || || || ||||||||||
Sbjct: 144627 acgtttgcattgttgaacataccttctttgagggataccacaatgaact 144579
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>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome
          Length = 569630

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    gaataagactaagagcaagaaggg 442
              |||||||| |||||||||||||||
Sbjct: 508391 gaataagaataagagcaagaaggg 508414
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>gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome 16, complete sequence
          Length = 206814

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 616   gtaactttcaaggtctcttt 635
             ||||||||||||||||||||
Sbjct: 15999 gtaactttcaaggtctcttt 16018
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>gb|AC158548.10| Mus musculus chromosome 5, clone RP23-258F17, complete sequence
          Length = 227065

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  aataagactaagagcaagaa 439
            ||||||||||||||||||||
Sbjct: 1518 aataagactaagagcaagaa 1499
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>ref|XM_584810.2| PREDICTED: Bos taurus similar to retinol dehydrogenase 13
           (all-trans and 9-cis) (LOC508082), mRNA
          Length = 2943

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 471 agattgcttccagactgttccaaatgcc 498
           |||||||||||||||| | |||||||||
Sbjct: 5   agattgcttccagactttgccaaatgcc 32
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>gb|BC062164.1| Mus musculus snail homolog 2 (Drosophila), mRNA (cDNA clone MGC:70074
            IMAGE:30242610), complete cds
          Length = 2084

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 616  gtaactttcaaggtctcttt 635
            ||||||||||||||||||||
Sbjct: 1968 gtaactttcaaggtctcttt 1987
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>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete
             genome
          Length = 701046

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 419   gaataagactaagagcaagaaggg 442
             |||||||| |||||||||||||||
Sbjct: 67323 gaataagaataagagcaagaaggg 67346
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>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome
          Length = 569553

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 419    gaataagactaagagcaagaaggg 442
              |||||||| |||||||||||||||
Sbjct: 513587 gaataagaataagagcaagaaggg 513564
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>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome
          Length = 535825

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 419   gaataagactaagagcaagaaggg 442
             |||||||| |||||||||||||||
Sbjct: 93685 gaataagaataagagcaagaaggg 93662
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>gb|AC116383.11| Mus musculus chromosome 5, clone RP23-15P21, complete sequence
          Length = 259299

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    aataagactaagagcaagaa 439
              ||||||||||||||||||||
Sbjct: 246672 aataagactaagagcaagaa 246653
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>ref|XM_660830.1| Cryptosporidium hominis TU502 SMC2 protein (Chro.40250) partial mRNA
          Length = 3711

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 442  gatcgctgtcctccactaagttcagacaaaga 473
            |||| |||||| ||||||||||||| ||||||
Sbjct: 3377 gatctctgtccaccactaagttcagtcaaaga 3346
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>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion,
              complete genome
          Length = 491515

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    gaataagactaagagcaagaaggg 442
              |||||||| |||||||||||||||
Sbjct: 256341 gaataagaataagagcaagaaggg 256364
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>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion,
              complete genome
          Length = 490673

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    gaataagactaagagcaagaaggg 442
              |||||||| |||||||||||||||
Sbjct: 255532 gaataagaataagagcaagaaggg 255555
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>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion,
              complete genome
          Length = 490669

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    gaataagactaagagcaagaaggg 442
              |||||||| |||||||||||||||
Sbjct: 255529 gaataagaataagagcaagaaggg 255552
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>emb|AL161714.8| Human DNA sequence from clone RP11-184E24 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 95566

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 500   cccgaacttcaagaccatcc 519
             ||||||||||||||||||||
Sbjct: 87670 cccgaacttcaagaccatcc 87689
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>gb|AC140280.3| Mus musculus BAC clone RP23-345I5 from chromosome 14, complete sequence
          Length = 205109

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   ttgactgccatgaccaaaga 139
             ||||||||||||||||||||
Sbjct: 71086 ttgactgccatgaccaaaga 71105
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>gb|AC027575.13| Homo sapiens chromosome 18, clone RP11-162A12, complete sequence
          Length = 165447

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 521  agaaggtaccaccttcagga 540
            ||||||||||||||||||||
Sbjct: 4257 agaaggtaccaccttcagga 4238
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>gb|AC154513.2| Mus musculus BAC clone RP24-72F2 from chromosome 16, complete sequence
          Length = 197862

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 616    gtaactttcaaggtctcttt 635
              ||||||||||||||||||||
Sbjct: 118002 gtaactttcaaggtctcttt 118021
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>dbj|AK133968.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730583D13 product:Zinc finger
            protein SLUG (Neural crest transcription factor Slug)
            (Snail homolog 2), full insert sequence
          Length = 2032

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 616  gtaactttcaaggtctcttt 635
            ||||||||||||||||||||
Sbjct: 1976 gtaactttcaaggtctcttt 1995
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>gb|U79550.1|MMU79550 Mus musculus Slug zinc finger protein (Slugh) mRNA, complete cds
          Length = 1945

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 616  gtaactttcaaggtctcttt 635
            ||||||||||||||||||||
Sbjct: 1899 gtaactttcaaggtctcttt 1918
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 419      gaataagactaagagcaagaaggg 442
                |||||||| |||||||||||||||
Sbjct: 20704175 gaataagaataagagcaagaaggg 20704152



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 419     gaataagactaagagcaagaaggg 442
               |||||||| |||||||||||||||
Sbjct: 8536968 gaataagaataagagcaagaaggg 8536945
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>emb|BX833125.1|CNS09ZBU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL35ZD02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 277

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 253 ttggcgttgttgaacataccctcttttagcga 284
           ||||| ||||||||||| || |||||||||||
Sbjct: 38  ttggcattgttgaacattccttcttttagcga 7
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>gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 551    ttgccattgtaccaggtaga 570
              ||||||||||||||||||||
Sbjct: 144142 ttgccattgtaccaggtaga 144161
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>gb|AC139085.3| Homo sapiens chromosome 18, clone XXfos-81053C2, complete sequence
          Length = 38131

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   agaaggtaccaccttcagga 540
             ||||||||||||||||||||
Sbjct: 13666 agaaggtaccaccttcagga 13685
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>ref|NM_011415.2| Mus musculus snail homolog 2 (Drosophila) (Snai2), mRNA
          Length = 2084

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 616  gtaactttcaaggtctcttt 635
            ||||||||||||||||||||
Sbjct: 1968 gtaactttcaaggtctcttt 1987
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>emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 in linkage group 17,
              complete sequence
          Length = 181677

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    ttgcttccagactgttccaa 493
              ||||||||||||||||||||
Sbjct: 126953 ttgcttccagactgttccaa 126934
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 419      gaataagactaagagcaagaaggg 442
                |||||||| |||||||||||||||
Sbjct: 20630389 gaataagaataagagcaagaaggg 20630366



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 419     gaataagactaagagcaagaaggg 442
               |||||||| |||||||||||||||
Sbjct: 8536851 gaataagaataagagcaagaaggg 8536828
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>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 149022

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 419  gaataagactaagagcaagaaggg 442
            |||||||| |||||||||||||||
Sbjct: 2016 gaataagaataagagcaagaaggg 1993
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>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 146444

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 419    gaataagactaagagcaagaaggg 442
              |||||||| |||||||||||||||
Sbjct: 143631 gaataagaataagagcaagaaggg 143608
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>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
          Length = 490520

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    gaataagactaagagcaagaaggg 442
              |||||||| |||||||||||||||
Sbjct: 255396 gaataagaataagagcaagaaggg 255419
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>emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chromosome 11, complete
             sequence
          Length = 148846

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ctcagatcaagggcagcatc 368
             ||||||||||||||||||||
Sbjct: 11931 ctcagatcaagggcagcatc 11912


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,935,494
Number of Sequences: 3902068
Number of extensions: 4935494
Number of successful extensions: 86611
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86220
Number of HSP's gapped (non-prelim): 389
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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