ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 468 e-128
2gb|AY109381.1| Zea mays CL3204_1 mRNA sequence 383 e-103
3gb|BT018673.1| Zea mays clone EL01N0510E07.d mRNA sequence 367 3e-98
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
5gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 109 1e-20
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7gb|AF051231.1|AF051231 Picea mariana ISP42-like protein (Sb41) m... 68 4e-08
8ref|NM_112890.3| Arabidopsis thaliana TOM40; voltage-gated ion-s... 44 0.62
9gb|AY117216.1| Arabidopsis thaliana putative membrane import pro... 44 0.62
10gb|AY050925.1| Arabidopsis thaliana putative membrane import pro... 44 0.62
11emb|BX824823.1|CNS0A5JY Arabidopsis thaliana Full-length cDNA Co... 44 0.62
12emb|BX824118.1|CNS0A5LF Arabidopsis thaliana Full-length cDNA Co... 44 0.62
13emb|BX822251.1|CNS0A5UN Arabidopsis thaliana Full-length cDNA Co... 44 0.62
14emb|BX824709.1|CNS0A5IA Arabidopsis thaliana Full-length cDNA Co... 44 0.62
15ref|NM_103923.1| Arabidopsis thaliana voltage-gated ion-selectiv... 42 2.4
16gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete s... 42 2.4
17gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete se... 42 2.4
18gb|AC092888.4| Homo sapiens 12 BAC RP11-597C7 (Roswell Park Canc... 42 2.4
19gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome... 42 2.4
20gb|AC102763.10| Mus musculus chromosome 8, clone RP24-500B21, co... 42 2.4
21emb|AL691437.7| Mouse DNA sequence from clone RP23-248J10 on chr... 42 2.4
22gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 9.7
23gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, nea... 40 9.7
24gb|AC116601.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
25gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 40 9.7
26gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chrom... 40 9.7
27emb|CR932665.1|CNS0KYDQ Paramecium tetraurelia, Small GTPase rab... 40 9.7
28ref|XM_727688.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.7
29ref|XM_739719.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.7
30gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hos... 40 9.7
31gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
32gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosom... 40 9.7
33emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment ... 40 9.7
34emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 9.7
35emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, c... 40 9.7
36gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 40 9.7
37gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence 40 9.7
38gb|AC118585.18| Pan troglodytes clone rp43-26n14, complete sequence 40 9.7
39gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, c... 40 9.7
40emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 40 9.7
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
42gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, comple... 40 9.7
43dbj|AB021267.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.7
44dbj|AB021266.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.7
45dbj|AB021264.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.7
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
47emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 40 9.7
48gb|AC141473.4| Mus musculus BAC clone RP24-187J17 from 3, comple... 40 9.7
49gb|AC133160.4| Mus musculus BAC clone RP24-531K24 from chromosom... 40 9.7
50emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 40 9.7
51dbj|AP000533.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 9.7 
>dbj|AK105342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G11, full
            insert sequence
          Length = 1638

 Score =  468 bits (236), Expect = e-128
 Identities = 389/440 (88%)
 Strand = Plus / Minus

                                                                        
Query: 268  tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 327
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1066 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatctct 1007

                                                                        
Query: 328  gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 387
            ||||| |||||||| || || |||||||||| |||||| ||||| ||||||||||| |||
Sbjct: 1006 gcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaacaaca 947

                                                                        
Query: 388  ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 447
            ||||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||||  
Sbjct: 946  ccatttgagtcaaattttccccttagtcggcactgcctaagcatatagtcataaccaaag 887

                                                                        
Query: 448  ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 507
            |||||||| || || || |||||||| |||||||| |||||||  ||||| || ||||| 
Sbjct: 886  ctggaagtaacgtcccttgacatgtgattatacatgaagtcagacgcaagggaaaccttc 827

                                                                        
Query: 508  tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 567
            || |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||
Sbjct: 826  tcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgtagagta 767

                                                                        
Query: 568  cccaccattttatctgtattgtagcgagaattaaatccaattcctgacttcctttgctga 627
            |||||||||||||||| ||| || ||||||  ||| |||||||||||||||||||| || 
Sbjct: 766  cccaccattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttggtgg 707

                                                                        
Query: 628  ccaagccagaatatctctgttcccatcgacaaatttggcgtaacactctggatataattt 687
            |||||||||||||| || |||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 706  ccaagccagaatatttcagttcccattgacaagttcggcgtaacactctgaatataattt 647

                                
Query: 688  gccccatagaacgcattatt 707
            ||||||||||||||||||||
Sbjct: 646  gccccatagaacgcattatt 627
to top
>gb|AY109381.1| Zea mays CL3204_1 mRNA sequence
          Length = 1476

 Score =  383 bits (193), Expect = e-103
 Identities = 376/437 (86%)
 Strand = Plus / Plus

                                                                       
Query: 268 tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 327
           ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||| 
Sbjct: 412 tactctcctacggtcattccaaaaccaaacttgtagttcttcttacaatggtcaatctca 471

                                                                       
Query: 328 gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 387
           ||||||||||| |||||||||||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 472 gcagatagaaggaagttgacacccatgttcaacctctcttccaagtatgcggcaacaaca 531

                                                                       
Query: 388 ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 447
           ||||| ||||| |||||||| ||||| |||||||| ||||| |  |||||||||||||  
Sbjct: 532 ccattcgagtctattttgcctcttaggcggcactgcctaagcaagtaatcataaccaaag 591

                                                                       
Query: 448 ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 507
           |||| ||| |||||||| ||||| ||||||||||| |||||||  ||||| || ||||| 
Sbjct: 592 ctggcagttacatctcttgacatatggttatacatgaagtcagacgcaagggaaaccttc 651

                                                                       
Query: 508 tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 567
           || ||||  || |||||||||||||| ||||| || |||||||| || ||||||||||| 
Sbjct: 652 tcggaaatcttctggacataacttaaggcaactattccagtgcttgcgacctgtagagtg 711

                                                                       
Query: 568 cccaccattttatctgtattgtagcgagaattaaatccaattcctgacttcctttgctga 627
           ||||||||||| ||||| |||||||||||   ||| |||||||| ||||||||||| |||
Sbjct: 712 cccaccattttgtctgtgttgtagcgagaggcaaaaccaattccagacttcctttggtga 771

                                                                       
Query: 628 ccaagccagaatatctctgttcccatcgacaaatttggcgtaacactctggatataattt 687
           ||||||||||| || || |||||||| || |  || || ||||||||||| |||||||||
Sbjct: 772 ccaagccagaacatttcagttcccattgataggttcggagtaacactctgaatataattt 831

                            
Query: 688 gccccatagaacgcatt 704
           || |||||||| |||||
Sbjct: 832 gcaccatagaatgcatt 848
to top
>gb|BT018673.1| Zea mays clone EL01N0510E07.d mRNA sequence
          Length = 1429

 Score =  367 bits (185), Expect = 3e-98
 Identities = 374/437 (85%)
 Strand = Plus / Minus

                                                                        
Query: 268  tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 327
            ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||| 
Sbjct: 1047 tactctcctacggtcattccaaaaccaaacttgtagttcttcttacaatggtcaatctca 988

                                                                        
Query: 328  gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 387
            ||||||||||| |||||||||||||||||||  ||||| ||||||||||| |||||  ||
Sbjct: 987  gcagatagaaggaagttgacacccatgttcaacctctcttccaagtatgcggcaacacca 928

                                                                        
Query: 388  ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 447
            ||||| ||||| |||||||| ||||| |||||||| ||||| |  |||||||||||||  
Sbjct: 927  ccattcgagtctattttgcctcttaggcggcactgcctaagcaagtaatcataaccaaag 868

                                                                        
Query: 448  ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 507
            |||| ||| |||||||| ||||| ||||||||||| |||||||  ||||| || ||||| 
Sbjct: 867  ctggcagttacatctcttgacatatggttatacatgaagtcagacgcaagggaaaccttc 808

                                                                        
Query: 508  tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 567
            || ||||  || |||||||||| ||| ||||| || |||||||| || ||||||||||| 
Sbjct: 807  tcggaaatcttctggacataacgtaaggcaactattccagtgcttgcgacctgtagagtg 748

                                                                        
Query: 568  cccaccattttatctgtattgtagcgagaattaaatccaattcctgacttcctttgctga 627
            ||||||||||| ||||| |||||||||||   ||| |||||||| ||||||||||| |||
Sbjct: 747  cccaccattttgtctgtgttgtagcgagaggcaaaaccaattccagacttcctttggtga 688

                                                                        
Query: 628  ccaagccagaatatctctgttcccatcgacaaatttggcgtaacactctggatataattt 687
            ||||||||||| || || |||||||| || |  || || ||||||||||| |||||||||
Sbjct: 687  ccaagccagaacatttcagttcccattgataggttcggagtaacactctgaatataattt 628

                             
Query: 688  gccccatagaacgcatt 704
            || |||||||| |||||
Sbjct: 627  gcaccatagaatgcatt 611
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                            
Query: 324      ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 383
                ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 11719863 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 11719804

                                                       
Query: 384      gacaccatttgagtcaattttgccccttagacggcactg 422
                 |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 11719803 aacaccatttgagtcaaattttccccttagtcggcactg 11719765



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                            
Query: 571      accattttatctgtattgtagcgagaattaaatccaattcctgacttcctttgctgacca 630
                ||||||||||||| ||| || ||||||  ||| |||||||||||||||||||| || |||
Sbjct: 11718753 accattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttggtggcca 11718694

                                                               
Query: 631      agccagaatatctctgttcccatcgacaaatttggcgtaacactctg 677
                ||||||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 11718693 agccagaatatttcagttcccattgacaagttcggcgtaacactctg 11718647



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                          
Query: 268      tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 325
                ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11720508 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 11720451



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 502      accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 561
                ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 11719406 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 11719347

                            
Query: 562      agagtacccacc 573
                ||||||||||||
Sbjct: 11719346 agagtacccacc 11719335



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                             
Query: 679      atataatttgccccatagaacgcattatt 707
                |||||||||||||||||||||||||||||
Sbjct: 11717983 atataatttgccccatagaacgcattatt 11717955



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 472      tggttatacataaagtcagt 491
                ||||||||||||||||||||
Sbjct: 29200841 tggttatacataaagtcagt 29200822
to top
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                          
Query: 324    ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 383
              ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 108958 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 108899

                                                     
Query: 384    gacaccatttgagtcaattttgccccttagacggcactg 422
               |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 108898 aacaccatttgagtcaaattttccccttagtcggcactg 108860



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                          
Query: 571    accattttatctgtattgtagcgagaattaaatccaattcctgacttcctttgctgacca 630
              ||||||||||||| ||| || ||||||  ||| |||||||||||||||||||| || |||
Sbjct: 107848 accattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttggtggcca 107789

                                                             
Query: 631    agccagaatatctctgttcccatcgacaaatttggcgtaacactctg 677
              ||||||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 107788 agccagaatatttcagttcccattgacaagttcggcgtaacactctg 107742



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                        
Query: 268    tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 325
              ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 109603 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 109546



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                          
Query: 502    accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 561
              ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 108501 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 108442

                          
Query: 562    agagtacccacc 573
              ||||||||||||
Sbjct: 108441 agagtacccacc 108430



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                           
Query: 679    atataatttgccccatagaacgcattatt 707
              |||||||||||||||||||||||||||||
Sbjct: 107078 atataatttgccccatagaacgcattatt 107050
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                            
Query: 324      ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 383
                ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 11716626 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 11716567

                                                       
Query: 384      gacaccatttgagtcaattttgccccttagacggcactg 422
                 |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 11716566 aacaccatttgagtcaaattttccccttagtcggcactg 11716528



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                            
Query: 571      accattttatctgtattgtagcgagaattaaatccaattcctgacttcctttgctgacca 630
                ||||||||||||| ||| || ||||||  ||| |||||||||||||||||||| || |||
Sbjct: 11715516 accattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttggtggcca 11715457

                                                               
Query: 631      agccagaatatctctgttcccatcgacaaatttggcgtaacactctg 677
                ||||||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 11715456 agccagaatatttcagttcccattgacaagttcggcgtaacactctg 11715410



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                          
Query: 268      tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 325
                ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11717271 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 11717214



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 502      accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 561
                ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 11716169 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 11716110

                            
Query: 562      agagtacccacc 573
                ||||||||||||
Sbjct: 11716109 agagtacccacc 11716098



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                             
Query: 679      atataatttgccccatagaacgcattatt 707
                |||||||||||||||||||||||||||||
Sbjct: 11714746 atataatttgccccatagaacgcattatt 11714718



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 472      tggttatacataaagtcagt 491
                ||||||||||||||||||||
Sbjct: 29292263 tggttatacataaagtcagt 29292244
to top
>gb|AF051231.1|AF051231 Picea mariana ISP42-like protein (Sb41) mRNA, partial cds
          Length = 651

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 207/262 (79%), Gaps = 2/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 270 ctctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctctgc 329
           |||||| |||||||| ||||||||||||||||| |  |||||   ||| |||||||||||
Sbjct: 280 ctctccaacagtcatcccaaaaccaaacttgtaatctttcttccaatgatcaatctctgc 221

                                                                       
Query: 330 agatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca-c 388
           ||| |||| ||| || || ||||| |||| ||| || ||||  || ||||| || ||| |
Sbjct: 220 agaaagaacaaaattcactcccatattcaatctttcttccagataagcagctac-acacc 162

                                                                       
Query: 389 catttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaacac 448
           ||||||  |||||  | ||||| || |||||||| | ||| |  ||||||||||||||||
Sbjct: 161 catttgtatcaatccttcccctcagccggcactgccgaagtaggtaatcataaccaacac 102

                                                                       
Query: 449 tggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacacctttt 508
           | |  ||   |||||| |||||||| || ||||| || ||||  || || ||||||||||
Sbjct: 101 tagctgttgaatctcttgacatgtgattgtacatgaaatcagatgccagtgacacctttt 42

                                 
Query: 509 cagaaactttttggacataact 530
           | || ||||| || ||||||||
Sbjct: 41  cggagactttctgcacataact 20
to top
>ref|NM_112890.3| Arabidopsis thaliana TOM40; voltage-gated ion-selective channel
            AT3G20000 (TOM40) mRNA, complete cds
          Length = 1343

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 289  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 346
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1006 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 949
to top
>gb|AY117216.1| Arabidopsis thaliana putative membrane import protein (At3g20000)
           mRNA, complete cds
          Length = 961

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 289 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 346
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 911 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 854
to top
>gb|AY050925.1| Arabidopsis thaliana putative membrane import protein (At3g20000)
           mRNA, complete cds
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 289 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 346
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 976 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 919
to top
>emb|BX824823.1|CNS0A5JY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH75ZE08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1290

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 289  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 346
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1001 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 944
to top
>emb|BX824118.1|CNS0A5LF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH23ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1026

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 289 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 346
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 704 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 647
to top
>emb|BX822251.1|CNS0A5UN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB23ZB11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1301

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 289  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 346
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1006 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 949
to top
>emb|BX824709.1|CNS0A5IA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZG09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1287

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 289  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 346
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1004 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 947
to top
>ref|NM_103923.1| Arabidopsis thaliana voltage-gated ion-selective channel AT1G50400
           mRNA, complete cds
          Length = 933

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 289 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaa 341
           |||||||||||||| | ||||||   ||| || | ||||||||||||||||||
Sbjct: 914 aaaccaaacttgtaatccttcttcacatgatccacctctgcagatagaagaaa 862
to top
>gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete sequence
          Length = 122819

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 501    caccttttcagaaactttttggacataacttaa 533
              ||||||||||||||| ||||| ||||| |||||
Sbjct: 103943 caccttttcagaaaccttttgaacatagcttaa 103911
to top
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
          Length = 151594

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 501   caccttttcagaaactttttggacataacttaa 533
             ||||||||||||||| ||||| ||||| |||||
Sbjct: 47653 caccttttcagaaaccttttgaacatagcttaa 47685
to top
>gb|AC092888.4| Homo sapiens 12 BAC RP11-597C7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169071

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 615   cttcctttgctgaccaagcca 635
             |||||||||||||||||||||
Sbjct: 76597 cttcctttgctgaccaagcca 76577
to top
>gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome 13, complete sequence
          Length = 214859

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    tcagcttgttcaacaaaaaatcatg 74
             |||||||| ||||||||||||||||
Sbjct: 68524 tcagcttggtcaacaaaaaatcatg 68548
to top
>gb|AC102763.10| Mus musculus chromosome 8, clone RP24-500B21, complete sequence
          Length = 161528

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 59    tcaacaaaaaatcatggacgcccaaatgcccat 91
             ||||||||||||||||||| || ||||| ||||
Sbjct: 36591 tcaacaaaaaatcatggacaccaaaatgaccat 36559
to top
>emb|AL691437.7| Mouse DNA sequence from clone RP23-248J10 on chromosome 2, complete
             sequence
          Length = 115517

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   ttgtagttcttctttggatgg 318
             |||||||||||||||||||||
Sbjct: 82192 ttgtagttcttctttggatgg 82172
to top
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cagcttgttcaacaaaaaat 70
              ||||||||||||||||||||
Sbjct: 964398 cagcttgttcaacaaaaaat 964417
to top
>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete
             sequence
          Length = 98913

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   tttcagaaactttttggaca 525
             ||||||||||||||||||||
Sbjct: 68383 tttcagaaactttttggaca 68402
to top
>gb|AC116601.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0079B05, complete sequence
          Length = 159382

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 658   aaatttggcgtaacactctg 677
             ||||||||||||||||||||
Sbjct: 44887 aaatttggcgtaacactctg 44868
to top
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
             sequence
          Length = 129440

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   tggttatacataaagtcagt 491
             ||||||||||||||||||||
Sbjct: 32702 tggttatacataaagtcagt 32683
to top
>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete
              sequence
          Length = 176398

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    gagaattaaatccaattcct 612
              ||||||||||||||||||||
Sbjct: 160978 gagaattaaatccaattcct 160959
to top
>emb|CR932665.1|CNS0KYDQ Paramecium tetraurelia, Small GTPase rab, putative, complete gene
          Length = 3001

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 590 agcgagaattaaatccaatt 609
           ||||||||||||||||||||
Sbjct: 522 agcgagaattaaatccaatt 503
to top
>ref|XM_727688.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301980.00.0)
           partial mRNA
          Length = 348

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 500 acaccttttcagaaactttt 519
           ||||||||||||||||||||
Sbjct: 209 acaccttttcagaaactttt 228
to top
>ref|XM_739719.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000618.02.0)
           partial mRNA
          Length = 618

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 500 acaccttttcagaaactttt 519
           ||||||||||||||||||||
Sbjct: 479 acaccttttcagaaactttt 498
to top
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228052

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     aatgcccatgctatctaaag 102
              ||||||||||||||||||||
Sbjct: 136595 aatgcccatgctatctaaag 136576
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 658     aaatttggcgtaacactctg 677
               ||||||||||||||||||||
Sbjct: 1246175 aaatttggcgtaacactctg 1246156
to top
>gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosome 9, complete sequence
          Length = 215017

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 609   tcctgacttcctttgctgac 628
             ||||||||||||||||||||
Sbjct: 46393 tcctgacttcctttgctgac 46412
to top
>emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment 3/24
          Length = 340750

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 379    gcaacgacaccatttgagtcaatt 402
              |||||||||||||||| |||||||
Sbjct: 146366 gcaacgacaccatttgggtcaatt 146343
to top
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cagcttgttcaacaaaaaat 70
              ||||||||||||||||||||
Sbjct: 263562 cagcttgttcaacaaaaaat 263581
to top
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7
          Length = 199615

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    tttcagaaactttttggaca 525
              ||||||||||||||||||||
Sbjct: 160719 tttcagaaactttttggaca 160700
to top
>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    gagaattaaatccaattcct 612
              ||||||||||||||||||||
Sbjct: 141152 gagaattaaatccaattcct 141133
to top
>gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence
          Length = 184706

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 593    gagaattaaatccaattcct 612
              ||||||||||||||||||||
Sbjct: 109899 gagaattaaatccaattcct 109918
to top
>gb|AC118585.18| Pan troglodytes clone rp43-26n14, complete sequence
          Length = 153334

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 593    gagaattaaatccaattcct 612
              ||||||||||||||||||||
Sbjct: 147967 gagaattaaatccaattcct 147986
to top
>gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, complete sequence
          Length = 145526

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 658    aaatttggcgtaacactctg 677
              ||||||||||||||||||||
Sbjct: 130413 aaatttggcgtaacactctg 130394
to top
>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    gagaattaaatccaattcct 612
              ||||||||||||||||||||
Sbjct: 111511 gagaattaaatccaattcct 111492
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 658     aaatttggcgtaacactctg 677
               ||||||||||||||||||||
Sbjct: 1246175 aaatttggcgtaacactctg 1246156
to top
>gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, complete sequence
          Length = 195280

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 593   gagaattaaatccaattcct 612
             ||||||||||||||||||||
Sbjct: 14344 gagaattaaatccaattcct 14325
to top
>dbj|AB021267.1| Arabidopsis thaliana copia-like retrotransposon AtRE2-2 gene for
            polyprotein, complete cds
          Length = 7342

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 506  tttcagaaactttttggaca 525
            ||||||||||||||||||||
Sbjct: 3109 tttcagaaactttttggaca 3128
to top
>dbj|AB021266.1| Arabidopsis thaliana copia-like retrotransposon AtRE2-1 gene for
            polyprotein, complete cds
          Length = 7281

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 506  tttcagaaactttttggaca 525
            ||||||||||||||||||||
Sbjct: 4099 tttcagaaactttttggaca 4118
to top
>dbj|AB021264.1| Arabidopsis thaliana copia-like retrotransposon AtRE2 gene for
            polyprotein, complete cds
          Length = 7989

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 506  tttcagaaactttttggaca 525
            ||||||||||||||||||||
Sbjct: 4116 tttcagaaactttttggaca 4135
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 658     aaatttggcgtaacactctg 677
               ||||||||||||||||||||
Sbjct: 1246172 aaatttggcgtaacactctg 1246153
to top
>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    gagaattaaatccaattcct 612
              ||||||||||||||||||||
Sbjct: 121502 gagaattaaatccaattcct 121483
to top
>gb|AC141473.4| Mus musculus BAC clone RP24-187J17 from 3, complete sequence
          Length = 178156

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    tcctgacttcctttgctgac 628
              ||||||||||||||||||||
Sbjct: 166498 tcctgacttcctttgctgac 166517
to top
>gb|AC133160.4| Mus musculus BAC clone RP24-531K24 from chromosome 3, complete sequence
          Length = 163562

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 609   tcctgacttcctttgctgac 628
             ||||||||||||||||||||
Sbjct: 60566 tcctgacttcctttgctgac 60585
to top
>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   gagaattaaatccaattcct 612
             ||||||||||||||||||||
Sbjct: 56718 gagaattaaatccaattcct 56737
to top
>dbj|AP000533.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c60G3
          Length = 45597

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   gagaattaaatccaattcct 612
             ||||||||||||||||||||
Sbjct: 38522 gagaattaaatccaattcct 38541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,860,076
Number of Sequences: 3902068
Number of extensions: 5860076
Number of successful extensions: 116856
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 116533
Number of HSP's gapped (non-prelim): 328
length of query: 707
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 684
effective length of database: 17,143,297,704
effective search space: 11726015629536
effective search space used: 11726015629536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top