ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1e02 |
|---|---|
| Clone Library Name | barley_pub |
>VPS4B_HUMAN (O75351) Vacuolar sorting protein 4b (SKD1 protein)| Length = 444 Score = 59.3 bits (142), Expect = 9e-09 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%) Frame = -3 Query: 616 SDVAVCVKDVLFEPVRKTQDAMYFFKTDG-----------DMWMPCGSKQPGAVQTTMQD 470 +D+++ V+D L +PVRK Q A +F K G D+ PC PGA++ T D Sbjct: 339 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMD 398 Query: 469 LASKGLASQILPPPISKSDFEKVLARQRPTVGKKDL 362 + ++L P +S SD + L+ +PTV + DL Sbjct: 399 VP----GDKLLEPVVSMSDMLRSLSNTKPTVNEHDL 430
>VPS4A_MOUSE (Q8VEJ9) Vacuolar sorting protein 4a| Length = 437 Score = 57.4 bits (137), Expect = 3e-08 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 11/96 (11%) Frame = -3 Query: 616 SDVAVCVKDVLFEPVRKTQDAMYFFKTDG-----------DMWMPCGSKQPGAVQTTMQD 470 +D+++ V+D L +PVRK Q A +F K G D+ PC PGA++ T D Sbjct: 332 ADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMD 391 Query: 469 LASKGLASQILPPPISKSDFEKVLARQRPTVGKKDL 362 + ++L P + SD + LA RPTV DL Sbjct: 392 VP----GDKLLEPVVCMSDMLRSLATTRPTVNADDL 423
>VPS4B_MOUSE (P46467) Vacuolar sorting protein 4b (SKD1 protein)| Length = 444 Score = 57.0 bits (136), Expect = 4e-08 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 11/96 (11%) Frame = -3 Query: 616 SDVAVCVKDVLFEPVRKTQDAMYFFKTDG-----------DMWMPCGSKQPGAVQTTMQD 470 +D+++ V+D L +PVRK Q A +F K G D+ PC PGA++ T D Sbjct: 339 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMD 398 Query: 469 LASKGLASQILPPPISKSDFEKVLARQRPTVGKKDL 362 + ++L P +S D + L+ +PTV ++DL Sbjct: 399 VP----GDKLLEPVVSMWDMLRSLSSTKPTVNEQDL 430
>VPS4A_HUMAN (Q9UN37) Vacuolar sorting protein 4a (SKD2 protein) (hVPS4)| (VPS4-1) Length = 437 Score = 56.6 bits (135), Expect = 6e-08 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 11/96 (11%) Frame = -3 Query: 616 SDVAVCVKDVLFEPVRKTQDAMYFFKTDG-----------DMWMPCGSKQPGAVQTTMQD 470 +D+++ V+D L +PVRK Q A +F K G D+ PC PGA++ T D Sbjct: 332 ADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMD 391 Query: 469 LASKGLASQILPPPISKSDFEKVLARQRPTVGKKDL 362 + ++L P + SD + LA RPTV DL Sbjct: 392 VP----GDKLLEPVVCMSDMLRSLATTRPTVNADDL 423
>VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein VPS4 (END13| protein) (DOA4-independent degradation protein 6) Length = 437 Score = 53.9 bits (128), Expect = 4e-07 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Frame = -3 Query: 616 SDVAVCVKDVLFEPVRKTQDAMYF--FKTDGD---MWMPCGSKQPGAVQTTMQDLASKGL 452 SD+AV VKD L +P+RK Q A +F T+ D PC GA++ + D+ Sbjct: 337 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIE---- 392 Query: 451 ASQILPPPISKSDFEKVLARQRPTVGKKDL 362 A ++ P ++ DF K + RPTV + DL Sbjct: 393 ADELKEPDLTIKDFLKAIKSTRPTVNEDDL 422
>VPS4_SCHPO (Q09803) Suppressor protein of bem1/bed5 double mutants| Length = 432 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Frame = -3 Query: 616 SDVAVCVKDVLFEPVRKTQDAMYF-----FKTDGDMWMPCGSKQPGAVQTTMQDLASKGL 452 SD+++ V+D + EPVR+ A +F K++ + PC P A +++ ++ + Sbjct: 333 SDISIVVRDAIMEPVRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVNPE-- 390 Query: 451 ASQILPPPISKSDFEKVLARQRPTVGKKDLEVH 353 I+ P ++ DF + + +PT+ D+E H Sbjct: 391 --DIMEPKLTVRDFYSAVRKVKPTLNAGDIEKH 421
>PTK6_HUMAN (Q13882) Tyrosine-protein kinase 6 (EC 2.7.10.2) (Breast tumor| kinase) (Tyrosine-protein kinase BRK) Length = 451 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -2 Query: 473 GSCIQRPCLTDSPTPNLEERFREGPREAETDCRQEGPGGAREVHQGVWR 327 G + PC P P E PRE T CR+ G G EV +G+W+ Sbjct: 163 GLRLAAPCRKHEPEPLPHWDDWERPREEFTLCRKLGSGYFGEVFEGLWK 211
>CEMA_CHAGL (Q8M9X3) Chloroplast envelope membrane protein| Length = 472 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Frame = -2 Query: 308 QPRELSRPMHSRTTEMYIVYNFDS----LRLGVKFADLYTLVALTVL 180 QP++L +H RT ++ YN DS L L F ++TL+ L +L Sbjct: 323 QPQDLGALIHQRTIQLAEYYNQDSINIILHLFTDFIAIFTLIVLLIL 369
>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated| protein 10.3) (High sulfur keratin-associated protein 10.3) (Keratin-associated protein 18-3) (Keratin-associated protein 18.3) Length = 221 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Frame = -1 Query: 591 MCCLSLCAKHRMLCT--SSRQMVTCG---CPVDRSNQVLCRPRCRILHPKALP 448 +CC+ +C+ C SSRQ C C S +LCRP CR + +P Sbjct: 123 ICCVPVCSGASSSCCQQSSRQPACCTTSCCRPSSSVSLLCRPVCRSTYCVPIP 175
>ZNHI4_MOUSE (Q99PT3) Zinc finger HIT domain-containing protein 4| (PAP-1-associated protein 1) (PAPA-1) (High mobility group AT-hook 1-like 4) Length = 345 Score = 30.4 bits (67), Expect = 4.3 Identities = 20/55 (36%), Positives = 23/55 (41%) Frame = +1 Query: 268 VVRLCMGRESSRGCVPLSPPRQTPW*TSRAPPGPSCRQSVSASRGPSRNRSSRLG 432 +VR C G + S P P T AP GP+ R SV P R SR G Sbjct: 261 MVRYCSGAQGSTLSFPPGVPTPTAVAQRPAPSGPAPRCSVPGCPHPRRYACSRTG 315
>MASS1_MOUSE (Q8VHN7) Monogenic audiogenic seizure susceptibility protein 1| precursor (Very large G-protein coupled receptor 1) (Neurepin) Length = 6298 Score = 30.4 bits (67), Expect = 4.3 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +3 Query: 270 GAAVHGSREFSRLRTTQPSSPNSLVNFSCTSR 365 GAA++ S F+ ++ ++ +P SLV+FS SR Sbjct: 5467 GAAINNSARFAPIKLSKSGAPQSLVSFSVGSR 5498
>ECLC_BOVIN (P54281) Epithelial chloride channel protein (Calcium-activated| chloride channel) Length = 903 Score = 30.4 bits (67), Expect = 4.3 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 9/51 (17%) Frame = -2 Query: 509 IEATRCCADH---------DAGSCIQRPCLTDSPTPNLEERFREGPREAET 384 IEATRC GSCI RPC DS T E + P +++T Sbjct: 182 IEATRCSTHITGTNVIVKCQGGSCITRPCRRDSQTGLYEAKCTFIPEKSQT 232
>KR10C_HUMAN (P60413) Keratin-associated protein 10-12 (Keratin-associated| protein 10.12) (High sulfur keratin-associated protein 10.12) (Keratin-associated protein 18-12) (Keratin-associated protein 18.12) Length = 245 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = -1 Query: 591 MCCLSLCAKHRMLCT--SSRQMVTCG---CPVDRSNQVLCRPRCR 472 +CC+ +C+ LC SS Q C C S +LCRP CR Sbjct: 160 ICCVPVCSGASSLCCQQSSCQPACCTTSCCRPSSSVSLLCRPVCR 204
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/38 (44%), Positives = 18/38 (47%) Frame = +1 Query: 313 PLSPPRQTPW*TSRAPPGPSCRQSVSASRGPSRNRSSR 426 P PP Q P +RAPPG R S PSR S R Sbjct: 825 PFGPPPQVPSRPNRAPPGVPSR---SGQASPSRPESPR 859
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = -1 Query: 591 MCCLSLCAKHRMLCT--SSRQMVTCG---CPVDRSNQVLCRPRCR 472 +CC+ +C+ LC SS Q C C S +LCRP CR Sbjct: 174 ICCVPVCSGASSLCCQKSSCQPACCTTSCCRPSSSVSLLCRPVCR 218
>TOM40_MOUSE (Q9QYA2) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 359 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Frame = +1 Query: 283 MGRESSRGCVPLSPPRQTPW*TSRAPPGPS-----CRQSVSASRGPSRNRSS 423 MG + P PP TP PP PS CR+S + G S R S Sbjct: 1 MGNVLAASSPPARPPPPTPSLVGLPPPPPSPPRSLCRRSAALGTGSSTGRGS 52
>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding| athanogene-3) (BAG-3) (Bcl-2-binding protein Bis) Length = 577 Score = 29.3 bits (64), Expect = 9.7 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +1 Query: 328 RQTPW*TSRAPP-GPSCRQSVSASRGPSRNRSSRLGVGE 441 R T W R PP GP + + S++ GPSRN S L + E Sbjct: 47 RTTTWNDPRVPPEGP--KDTASSANGPSRNGSRLLPIRE 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,484,028 Number of Sequences: 219361 Number of extensions: 1958942 Number of successful extensions: 6195 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5823 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6183 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
