ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL136090.12| Human DNA sequence from clone RP11-97N19 on chr... 40 3.7
2emb|CR548643.7| Zebrafish DNA sequence from clone CH211-217H15 i... 40 3.7
3emb|BX663524.6| Zebrafish DNA sequence from clone DKEY-97K15, co... 40 3.7
4ref|XM_685077.1| PREDICTED: Danio rerio similar to G protein-cou... 40 3.7
5gb|AC155881.2| Medicago truncatula chromosome 7 BAC clone mte1-6... 40 3.7
6gb|AC116483.10| Mus musculus chromosome 1, clone RP23-424K5, com... 40 3.7
7emb|AL928926.9| Mouse DNA sequence from clone RP23-443G7 on chro... 40 3.7
8emb|BX511188.7| Zebrafish DNA sequence from clone DKEY-184A17 in... 40 3.7

>emb|AL136090.12| Human DNA sequence from clone RP11-97N19 on chromosome 20 Contains the 5'
              end of the SLC24A3 gene for solute carrier family 24
              (sodium/potassium/calcium exchanger) member 3, a novel gene
              and a CpG island, complete sequence
          Length = 185473

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     catactttacaccccaaaat 85
              ||||||||||||||||||||
Sbjct: 107110 catactttacaccccaaaat 107091



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>emb|CR548643.7| Zebrafish DNA sequence from clone CH211-217H15 in linkage group 13,
             complete sequence
          Length = 90157

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    agcaaaccacaagcaaacac 32
             ||||||||||||||||||||
Sbjct: 21598 agcaaaccacaagcaaacac 21579



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>emb|BX663524.6| Zebrafish DNA sequence from clone DKEY-97K15, complete sequence
          Length = 196030

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     agcaaaccacaagcaaacac 32
              ||||||||||||||||||||
Sbjct: 181086 agcaaaccacaagcaaacac 181067



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>ref|XM_685077.1| PREDICTED: Danio rerio similar to G protein-coupled receptor 75
            (LOC561668), mRNA
          Length = 2582

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   agcaaaccacaagcaaacac 32
            ||||||||||||||||||||
Sbjct: 2358 agcaaaccacaagcaaacac 2339



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>gb|AC155881.2| Medicago truncatula chromosome 7 BAC clone mte1-60d3, complete sequence
          Length = 100208

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    cagcaaaccacaagcaaaca 31
             ||||||||||||||||||||
Sbjct: 15692 cagcaaaccacaagcaaaca 15711



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>gb|AC116483.10| Mus musculus chromosome 1, clone RP23-424K5, complete sequence
          Length = 194546

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     agcaaaccacaagcaaacac 32
              ||||||||||||||||||||
Sbjct: 187179 agcaaaccacaagcaaacac 187160



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>emb|AL928926.9| Mouse DNA sequence from clone RP23-443G7 on chromosome 2, complete
             sequence
          Length = 211456

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gacacagcagaaatgcaaag 108
             ||||||||||||||||||||
Sbjct: 61555 gacacagcagaaatgcaaag 61536



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>emb|BX511188.7| Zebrafish DNA sequence from clone DKEY-184A17 in linkage group 13,
              complete sequence
          Length = 233525

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     agcaaaccacaagcaaacac 32
              ||||||||||||||||||||
Sbjct: 165029 agcaaaccacaagcaaacac 165010


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,902,319
Number of Sequences: 3902068
Number of extensions: 1902319
Number of successful extensions: 34138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34129
Number of HSP's gapped (non-prelim): 9
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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