ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1d20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 78 4e-11
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
3dbj|AK063294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
4emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 78 4e-11
5gb|AY112080.1| Zea mays CL35574_1 mRNA sequence 62 2e-06
6gb|AC093159.3| Homo sapiens BAC clone RP11-642D6 from 2, complet... 48 0.034
7emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on ch... 48 0.034
8gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, comp... 42 2.1
9gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, co... 40 8.3
10gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome ... 40 8.3
11emb|CR381625.6| Zebrafish DNA sequence from clone CH211-226F10, ... 40 8.3
12gb|AC012083.6| Homo sapiens 12 BAC RP11-864A19 (Roswell Park Can... 40 8.3
13dbj|AK158921.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 8.3
14gb|AC114612.13| Mus musculus chromosome 7, clone RP24-80O23, com... 40 8.3
15gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 8.3
16emb|AL772150.11| Mouse DNA sequence from clone RP23-457P12 on ch... 40 8.3 
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                          
Query: 302    gcattcaacgacgcctcctgtctctgtgctcatctctagaatagcgctcttcataatccc 361
              ||||||||||| ||||||||||||| |  |||||||||||||| |||| |||||| ||||
Sbjct: 147215 gcattcaacgatgcctcctgtctctatattcatctctagaataacgctgttcatagtccc 147156

                                                                     
Query: 362    tccttgagtggttataagagtcatcatatctagacctctttgaatcatggctatc 416
              | |  || || | |||||| ||||||| ||||||||| || | |||| |||||||
Sbjct: 147155 ttcgagaatgatgataagaatcatcatgtctagaccttttcggatcacggctatc 147101
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                            
Query: 302      gcattcaacgacgcctcctgtctctgtgctcatctctagaatagcgctcttcataatccc 361
                ||||||||||| ||||||||||||| |  |||||||||||||| |||| |||||| ||||
Sbjct: 30879694 gcattcaacgatgcctcctgtctctatattcatctctagaataacgctgttcatagtccc 30879635

                                                                       
Query: 362      tccttgagtggttataagagtcatcatatctagacctctttgaatcatggctatc 416
                | |  || || | |||||| ||||||| ||||||||| || | |||| |||||||
Sbjct: 30879634 ttcgagaatgatgataagaatcatcatgtctagaccttttcggatcacggctatc 30879580
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>dbj|AK063294.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E08, full
            insert sequence
          Length = 1987

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcattcaacgacgcctcctgtctctgtgctcatctctagaatagcgctcttcataatccc 361
            ||||||||||| ||||||||||||| |  |||||||||||||| |||| |||||| ||||
Sbjct: 1676 gcattcaacgatgcctcctgtctctatattcatctctagaataacgctgttcatagtccc 1617

                                                                   
Query: 362  tccttgagtggttataagagtcatcatatctagacctctttgaatcatggctatc 416
            | |  || || | |||||| ||||||| ||||||||| || | |||| |||||||
Sbjct: 1616 ttcgagaatgatgataagaatcatcatgtctagaccttttcggatcacggctatc 1562
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                         
Query: 302   gcattcaacgacgcctcctgtctctgtgctcatctctagaatagcgctcttcataatccc 361
             ||||||||||| ||||||||||||| |  |||||||||||||| |||| |||||| ||||
Sbjct: 56272 gcattcaacgatgcctcctgtctctatattcatctctagaataacgctgttcatagtccc 56213

                                                                    
Query: 362   tccttgagtggttataagagtcatcatatctagacctctttgaatcatggctatc 416
             | |  || || | |||||| ||||||| ||||||||| || | |||| |||||||
Sbjct: 56212 ttcgagaatgatgataagaatcatcatgtctagaccttttcggatcacggctatc 56158
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>gb|AY112080.1| Zea mays CL35574_1 mRNA sequence
          Length = 832

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 311 gacgcctcctgtctctgtgctcatctctagaatagcgctcttcataatccctccttgagt 370
           ||||||| |||||||| |  || |||||||||||||| | |||||||||||||||||| |
Sbjct: 293 gacgccttctgtctctattttcgtctctagaatagcgttgttcataatccctccttgaat 352

              
Query: 371 ggt 373
           |||
Sbjct: 353 ggt 355
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>gb|AC093159.3| Homo sapiens BAC clone RP11-642D6 from 2, complete sequence
          Length = 186561

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 490    tttgcatttgggtcatacctatct 513
              ||||||||||||||||||||||||
Sbjct: 172817 tttgcatttgggtcatacctatct 172794
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>emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on chromosome 16, complete
              sequence
          Length = 187418

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 399    ctttgaatcatggctatctgagtatctagctctgtg 434
              |||||||  |||||||||||||||||| ||||||||
Sbjct: 160495 ctttgaagaatggctatctgagtatctggctctgtg 160530
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>gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, complete sequence
          Length = 178864

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 535    ccataatcttctgcgtttttc 555
              |||||||||||||||||||||
Sbjct: 111157 ccataatcttctgcgtttttc 111137
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>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence
          Length = 188701

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tataagctccacattttaca 57
              ||||||||||||||||||||
Sbjct: 182831 tataagctccacattttaca 182850
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>gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome 15, complete sequence
          Length = 218870

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    acaaacatgagcaaacaaaa 117
             ||||||||||||||||||||
Sbjct: 86825 acaaacatgagcaaacaaaa 86844
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>emb|CR381625.6| Zebrafish DNA sequence from clone CH211-226F10, complete sequence
          Length = 193233

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 36     agtataagctccacattttacaca 59
              ||||||| ||||||||||||||||
Sbjct: 180412 agtataaactccacattttacaca 180435
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>gb|AC012083.6| Homo sapiens 12 BAC RP11-864A19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166257

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   actttgcttcatggaaatga 279
             ||||||||||||||||||||
Sbjct: 64417 actttgcttcatggaaatga 64436
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>dbj|AK158921.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K530008M24 product:unclassifiable, full insert
            sequence
          Length = 4044

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   acaaacatgagcaaacaaaa 117
            ||||||||||||||||||||
Sbjct: 2244 acaaacatgagcaaacaaaa 2263
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>gb|AC114612.13| Mus musculus chromosome 7, clone RP24-80O23, complete sequence
          Length = 189471

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tataagctccacattttaca 57
             ||||||||||||||||||||
Sbjct: 97090 tataagctccacattttaca 97071
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     attgctggatgacagctagc 160
               ||||||||||||||||||||
Sbjct: 1492743 attgctggatgacagctagc 1492762
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>emb|AL772150.11| Mouse DNA sequence from clone RP23-457P12 on chromosome 4, complete
            sequence
          Length = 186505

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 382  tcatcatatctagacctctttgaa 405
            ||||||||| ||||||||||||||
Sbjct: 9464 tcatcatatgtagacctctttgaa 9487


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,043,192
Number of Sequences: 3902068
Number of extensions: 4043192
Number of successful extensions: 67992
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67931
Number of HSP's gapped (non-prelim): 61
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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