>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 480

 Score =  244 bits (623), Expect = 1e-64
 Identities = 110/127 (86%), Positives = 122/127 (96%)
 Frame = -3

Query: 581 LGDKAKISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDA 402
           LGDKA +SIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTT K+VSV WDAYEATKDA
Sbjct: 354 LGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDA 413

Query: 401 HGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPLDGWL 222
           HG+CI+TEWDEFKTLDY+KI+D+MQKPAFVFDGRN+VD++KLREIGFIVYSIGKPLD WL
Sbjct: 414 HGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWL 473

Query: 221 KDMPAVA 201
           KDMPAVA
Sbjct: 474 KDMPAVA 480

>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless)
          Length = 476

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
 Frame = -3

Query: 581 LGDKAKISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQ-VSVTWDAYEATKD 405
           L + A + IYDP+V  +QI  DL        HP   +  SP   K+ V +  D Y A + 
Sbjct: 354 LEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRA 404

Query: 404 AHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGK 240
            H + I TEWDEF  LD+K+IY SM KPA++FDGR ++D E+L++IGF V +IGK
Sbjct: 405 THALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459

>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva
           protein 4)
          Length = 481

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 46/115 (40%), Positives = 68/115 (59%)
 Frame = -3

Query: 575 DKAKISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDAHG 396
           + AK+S+YDP+V + Q+  DLA      D             + ++V  D Y A + AH 
Sbjct: 367 EHAKLSVYDPKVQKSQMLNDLASVTSAQD-----------VERLITVESDPYAAARGAHA 415

Query: 395 ICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPLD 231
           I ++TEWDEF  L+Y +I++ MQ PA +FDGR ++D + LREIGF  ++IG   D
Sbjct: 416 IVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470

>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 494

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
 Frame = -3

Query: 581 LGDKAKISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDA 402
           + + A + IYDP+V  +QI  DL+      D  V         ++ V+++ D YEA   A
Sbjct: 358 MDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGA 408

Query: 401 HGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 240
           H + I TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 409 HAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 494

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = -3

Query: 581 LGDKAKISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDA 402
           + + A + IYDP+V  +QI  DL+      D  V          + V+++ D YEA   A
Sbjct: 358 MDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGA 408

Query: 401 HGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 240
           H + I TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 409 HAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 493

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
 Frame = -3

Query: 581 LGDKAKISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDA 402
           + + A + IYDP+V  +QI  DL+      D  V         ++ V+++ D YEA   A
Sbjct: 358 MDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQV---------SRLVTISKDPYEACDGA 408

Query: 401 HGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 240
           H + I TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 409 HALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464

>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 493

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
 Frame = -3

Query: 581 LGDKAKISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDA 402
           + + A + IYDP+V  +QI  DL+      D  V         ++ V+++ D YEA   A
Sbjct: 358 MDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQV---------SRLVTISKDPYEACDGA 408

Query: 401 HGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 240
           H + I TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 409 HALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 432

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
 Frame = -3

Query: 527 IQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWD-AYEATKDAHGICIMTEWDEFKTLDY 351
           + +D+ +  FD   P+ L+        +  +  D A +A K    I I TEW EFK L++
Sbjct: 338 LNKDVYVKAFD---PIGLENAKKNLEHKNLLYLDSAVDACKSVDIIVIATEWSEFKELNW 394

Query: 350 KKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPL 234
           ++IYD ++ P  + D RN++D+E +++IGF  Y++G  +
Sbjct: 395 QEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAVGSKI 432

>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 434

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = -3

Query: 527 IQRDLAMNKFDWDHPVHLQPMSPTTT-KQVSVTWDAYEATKDAHGICIMTEWDEFKTLDY 351
           + +D+ +  FD   P+ L+        K +     A EA K    I I TEW EFK L++
Sbjct: 340 LNKDVYVKAFD---PIGLENAKKNLEHKNLLYFASAVEACKSVDIIVIATEWSEFKELNW 396

Query: 350 KKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPL 234
           ++IY+ ++ P  + D RN++D+E +++IGF  Y++G  +
Sbjct: 397 QEIYNLVKSP-MIIDLRNILDNEVMKKIGFRYYAVGSQI 434

>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 453

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = -3

Query: 422 YEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIG 243
           Y A + A  + ++TEW +F+  D++KI  SM+ P  V DGRN+    ++ E+GFI   IG
Sbjct: 383 YAAVEGADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIG 441

Query: 242 KPLDGWLK 219
           +P  G  K
Sbjct: 442 RPRAGHCK 449

>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid
           biosynthesis protein tuaD)
          Length = 461

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 26/83 (31%), Positives = 46/83 (55%)
 Frame = -3

Query: 485 PVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFD 306
           P+ +   S    +QV    D Y A +D     I+T+W E K ++  K+   +++P  + D
Sbjct: 351 PIAIPEASAILGEQVEYYTDVYAAMEDTDACLILTDWPEVKEMELVKVKTLLKQPV-IID 409

Query: 305 GRNVVDSEKLREIGFIVYSIGKP 237
           GRN+   E+++  G+I +SIG+P
Sbjct: 410 GRNLFSLEEMQAAGYIYHSIGRP 432

>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja|
            UDPGD intein]
          Length = 895

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 27/63 (42%), Positives = 41/63 (65%)
 Frame = -3

Query: 428  DAYEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYS 249
            D YE  K+  GI I  E+D F   D++KI  ++ K   VFDGRN++D EK++++GF  Y 
Sbjct: 835  DLYETVKNVDGIIITVEYD-FNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFKYYG 892

Query: 248  IGK 240
            +G+
Sbjct: 893  VGR 895

>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 437

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 25/64 (39%), Positives = 41/64 (64%)
 Frame = -3

Query: 428 DAYEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYS 249
           D YEA  +A  + I+TEW+EF+ LD+ ++  +M+ P  V D RN+   +++ + GF   S
Sbjct: 374 DPYEAAAEADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRYAS 432

Query: 248 IGKP 237
           IG+P
Sbjct: 433 IGRP 436

>TGT_CAUCR (Q9A7Y1) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 371

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -3

Query: 437 VTWDAYEATKDAHGICIMTEW-----DEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLR 273
           V W A EA +   G+ +   W     D F T D + ++   Q     F+      SE+LR
Sbjct: 150 VAWPAEEA-RARKGMELSARWAKRSKDAFGTRDTQVLFGIQQ--GSTFENLRRESSERLR 206

Query: 272 EIGFIVYSIG 243
           EIGF  Y+IG
Sbjct: 207 EIGFDGYAIG 216

>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
 Frame = +3

Query: 159 FTRGGSPPSIRVYLSHSRHVLEPTVEWLANGVDN---ESNFP--ELLRVNNIAAIKNK-- 317
           FTRG +   + V L  SR   +   E L + +DN     NFP   +  +  + + K +  
Sbjct: 343 FTRGETQSLVSVTLGTSRDA-QNLDELLGDRIDNFLFHYNFPPYSVGEIGMVGSPKRREI 401

Query: 318 --GRLLHAVIDLLVVKSLELIPLSHDADAMGILGRLIRIPGNRDLLCSCGAHWLEMDRVV 491
             GRL    + L V+ +LE  P +     + ++  +    G+  +   CGA    MD  V
Sbjct: 402 GHGRLAKRSL-LAVMPTLENFPYT-----IRVVSEITESNGSSSMASVCGASLALMDAGV 455

Query: 492 PVKFVHRKVTLDLV 533
           P+K     +++ LV
Sbjct: 456 PIKSAVAGISMGLV 469

>MRAW_BIFLO (Q8G4R0) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 359

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +3

Query: 273 PELLRVNNIAAIKNKGRLLHAVIDLLVVKSLELIPLSHDADAMGILGRLIRIPGNRDLLC 452
           P L   N IA     G   H++  L       LI +  D++A+G+    +   G  D   
Sbjct: 22  PALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLATERMEREGLADRFI 81

Query: 453 SCGAHWLEMDRVVPVKFVHR--KVTLDLVFSHLRIINAD 563
              A + ++D+V+  + + R   V +DL  S L+I   D
Sbjct: 82  PVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETD 120

>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1449

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 356 DYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPLD 231
           DY +I   +Q   F+    NV D E+LRE+   +Y +GK +D
Sbjct: 702 DYLEI-QPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMD 742

>ARGD_VIBPA (Q87L20) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 403

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 129 AESL*IAAHGFTRGGSPPSIRVYLSHSRHVLEPTVEWLANGVDNESNFPELL-----RVN 293
           AE L +  HG T GG+P +  V  +    V +P V  LA  ++ E+ F   L     + N
Sbjct: 272 AEHLKVGTHGSTYGGNPLACAVAEAVVNEVTKPEV--LAGVLEREALFRAGLEKINAKYN 329

Query: 294 NIAAIKNKGRLLHAVID 344
             + ++ KG LL A ++
Sbjct: 330 LFSEVRGKGLLLGAALN 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,951,481
Number of Sequences: 219361
Number of extensions: 1864368
Number of successful extensions: 5230
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5216
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)