ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1d15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A13, full insert sequence Length = 1321 Score = 145 bits (73), Expect = 1e-31 Identities = 232/293 (79%) Strand = Plus / Minus Query: 112 ggttgcgggatgacnaaactttntggtctaccggnttaccgcttccaaccagatctntat 171 |||||| |||||| || |||| ||||||||||| | ||||||||||| ||| | | Sbjct: 1102 ggttgccggatgatgaacctttctggtctaccgggtccttgcttccaaccaagtctctgt 1043 Query: 172 aacgctgctcnnagtcatgcagnttncngtnngaaatgtcagaatgaatcnncctnctga 231 ||||||| || |||||| || || | || || ||||||| |||||| ||| | || Sbjct: 1042 aacgctgttcccagtcatctagcttcccgtttgatatgtcagcatgaatggcccttcgga 983 Query: 232 tnncttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtactnnttncagc 291 | ||||||| || |||||||||| ||| ||||||||| |||||| || || |||| Sbjct: 982 tgccttttacaaccaaaaagtactccaccataaggatgagcggtatgaacatcttccagc 923 Query: 292 gattgttcggatttggaccgtngattaacttntgatcaacatgaatggacctgcttccat 351 ||||||| ||||||||||| | |||| ||| ||||||||||||||||| |||| || | Sbjct: 922 gattgttgggatttggaccatctattagcttttgatcaacatgaatggatttgctcccgt 863 Query: 352 ttgagacaacnatagtgatntctttcatcaagtttggaatccatggagtncca 404 |||||||||| |||| || |||||||||||||| |||||||||||||| ||| Sbjct: 862 ttgagacaacagtagtaatctctttcatcaagttcggaatccatggagttcca 810
>dbj|AK058676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H08, full insert sequence Length = 1406 Score = 145 bits (73), Expect = 1e-31 Identities = 232/293 (79%) Strand = Plus / Minus Query: 112 ggttgcgggatgacnaaactttntggtctaccggnttaccgcttccaaccagatctntat 171 |||||| |||||| || |||| ||||||||||| | ||||||||||| ||| | | Sbjct: 1179 ggttgccggatgatgaacctttctggtctaccgggtccttgcttccaaccaagtctctgt 1120 Query: 172 aacgctgctcnnagtcatgcagnttncngtnngaaatgtcagaatgaatcnncctnctga 231 ||||||| || |||||| || || | || || ||||||| |||||| ||| | || Sbjct: 1119 aacgctgttcccagtcatctagcttcccgtttgatatgtcagcatgaatggcccttcgga 1060 Query: 232 tnncttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtactnnttncagc 291 | ||||||| || |||||||||| ||| ||||||||| |||||| || || |||| Sbjct: 1059 tgccttttacaaccaaaaagtactccaccataaggatgagcggtatgaacatcttccagc 1000 Query: 292 gattgttcggatttggaccgtngattaacttntgatcaacatgaatggacctgcttccat 351 ||||||| ||||||||||| | |||| ||| ||||||||||||||||| |||| || | Sbjct: 999 gattgttgggatttggaccatctattagcttttgatcaacatgaatggatttgctcccgt 940 Query: 352 ttgagacaacnatagtgatntctttcatcaagtttggaatccatggagtncca 404 |||||||||| |||| || |||||||||||||| |||||||||||||| ||| Sbjct: 939 ttgagacaacagtagtaatctctttcatcaagttcggaatccatggagttcca 887
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 5e-25 Identities = 120/142 (84%) Strand = Plus / Plus Query: 263 aaggatgagaggtatgtactnnttncagcgattgttcggatttggaccgtngattaactt 322 ||||||||| |||||| || || ||||||||||| ||||||||||| | |||| ||| Sbjct: 7404136 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 7404195 Query: 323 ntgatcaacatgaatggacctgcttccatttgagacaacnatagtgatntctttcatcaa 382 ||||||||||||||||| |||| || ||||||||||| |||| || ||||||||||| Sbjct: 7404196 ttgatcaacatgaatggatttgctcccgtttgagacaacagtagtaatctctttcatcaa 7404255 Query: 383 gtttggaatccatggagtncca 404 ||| |||||||||||||| ||| Sbjct: 7404256 gttcggaatccatggagttcca 7404277 Score = 42.1 bits (21), Expect = 1.4 Identities = 110/145 (75%) Strand = Plus / Plus Query: 112 ggttgcgggatgacnaaactttntggtctaccggnttaccgcttccaaccagatctntat 171 |||||| |||||| || |||| ||||||||||| | ||||||||||| ||| | | Sbjct: 7403884 ggttgccggatgatgaacctttctggtctaccgggtccttgcttccaaccaagtctctgt 7403943 Query: 172 aacgctgctcnnagtcatgcagnttncngtnngaaatgtcagaatgaatcnncctnctga 231 ||||||| || |||||| || || | || || ||||||| |||||| ||| | || Sbjct: 7403944 aacgctgttcccagtcatctagcttcccgtttgatatgtcagcatgaatggcccttcgga 7404003 Query: 232 tnncttttaccacaaaaaagtactg 256 | ||||||| || ||||||||||| Sbjct: 7404004 tgccttttacaaccaaaaagtactg 7404028
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 123 bits (62), Expect = 5e-25 Identities = 120/142 (84%) Strand = Plus / Plus Query: 263 aaggatgagaggtatgtactnnttncagcgattgttcggatttggaccgtngattaactt 322 ||||||||| |||||| || || ||||||||||| ||||||||||| | |||| ||| Sbjct: 42691 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 42750 Query: 323 ntgatcaacatgaatggacctgcttccatttgagacaacnatagtgatntctttcatcaa 382 ||||||||||||||||| |||| || ||||||||||| |||| || ||||||||||| Sbjct: 42751 ttgatcaacatgaatggatttgctcccgtttgagacaacagtagtaatctctttcatcaa 42810 Query: 383 gtttggaatccatggagtncca 404 ||| |||||||||||||| ||| Sbjct: 42811 gttcggaatccatggagttcca 42832 Score = 42.1 bits (21), Expect = 1.4 Identities = 110/145 (75%) Strand = Plus / Plus Query: 112 ggttgcgggatgacnaaactttntggtctaccggnttaccgcttccaaccagatctntat 171 |||||| |||||| || |||| ||||||||||| | ||||||||||| ||| | | Sbjct: 42439 ggttgccggatgatgaacctttctggtctaccgggtccttgcttccaaccaagtctctgt 42498 Query: 172 aacgctgctcnnagtcatgcagnttncngtnngaaatgtcagaatgaatcnncctnctga 231 ||||||| || |||||| || || | || || ||||||| |||||| ||| | || Sbjct: 42499 aacgctgttcccagtcatctagcttcccgtttgatatgtcagcatgaatggcccttcgga 42558 Query: 232 tnncttttaccacaaaaaagtactg 256 | ||||||| || ||||||||||| Sbjct: 42559 tgccttttacaaccaaaaagtactg 42583
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 5e-25 Identities = 120/142 (84%) Strand = Plus / Plus Query: 263 aaggatgagaggtatgtactnnttncagcgattgttcggatttggaccgtngattaactt 322 ||||||||| |||||| || || ||||||||||| ||||||||||| | |||| ||| Sbjct: 7401971 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 7402030 Query: 323 ntgatcaacatgaatggacctgcttccatttgagacaacnatagtgatntctttcatcaa 382 ||||||||||||||||| |||| || ||||||||||| |||| || ||||||||||| Sbjct: 7402031 ttgatcaacatgaatggatttgctcccgtttgagacaacagtagtaatctctttcatcaa 7402090 Query: 383 gtttggaatccatggagtncca 404 ||| |||||||||||||| ||| Sbjct: 7402091 gttcggaatccatggagttcca 7402112 Score = 42.1 bits (21), Expect = 1.4 Identities = 110/145 (75%) Strand = Plus / Plus Query: 112 ggttgcgggatgacnaaactttntggtctaccggnttaccgcttccaaccagatctntat 171 |||||| |||||| || |||| ||||||||||| | ||||||||||| ||| | | Sbjct: 7401719 ggttgccggatgatgaacctttctggtctaccgggtccttgcttccaaccaagtctctgt 7401778 Query: 172 aacgctgctcnnagtcatgcagnttncngtnngaaatgtcagaatgaatcnncctnctga 231 ||||||| || |||||| || || | || || ||||||| |||||| ||| | || Sbjct: 7401779 aacgctgttcccagtcatctagcttcccgtttgatatgtcagcatgaatggcccttcgga 7401838 Query: 232 tnncttttaccacaaaaaagtactg 256 | ||||||| || ||||||||||| Sbjct: 7401839 tgccttttacaaccaaaaagtactg 7401863
>emb|AJ271049.1|ZMA271049 Zea mays mRNA for Toc34-2 protein (toc34B gene) Length = 1313 Score = 101 bits (51), Expect = 2e-18 Identities = 128/156 (82%) Strand = Plus / Minus Query: 235 cttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtactnnttncagcgat 294 |||||||||| || ||||||| |||||||||||| || |||||| || || | ||||| Sbjct: 979 cttttaccaccaagaagtactccacagcaaggataagtggtatgaacaactttcggcgat 920 Query: 295 tgttcggatttggaccgtngattaacttntgatcaacatgaatggacctgcttccatttg 354 |||| || |||||||| | |||||||| |||||||||||||||| ||||| || |||| Sbjct: 919 tgttagggtttggaccatcaattaacttctgatcaacatgaatgggactgctcccgtttg 860 Query: 355 agacaacnatagtgatntctttcatcaagtttggaa 390 ||| || | ||| || |||||||||| |||||||| Sbjct: 859 agatgacaacagtaatttctttcatcaggtttggaa 824
>emb|AJ245968.2|ZMA245968 Zea mays mRNA for Toc34-1 protein (toc34A gene) Length = 1233 Score = 91.7 bits (46), Expect = 2e-15 Identities = 137/170 (80%) Strand = Plus / Minus Query: 235 cttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtactnnttncagcgat 294 ||||||| || || ||||||| ||||||||| || | |||||| || || ||||||| Sbjct: 933 cttttactaccaagaagtactccacagcaagtataattggtatgaacatcttccagcgat 874 Query: 295 tgttcggatttggaccgtngattaacttntgatcaacatgaatggacctgcttccatttg 354 |||| || |||||||| | |||||||| |||||||||||||||| | |||| || |||| Sbjct: 873 tgttagggtttggaccatcaattaacttctgatcaacatgaatgggcttgctcccgtttg 814 Query: 355 agacaacnatagtgatntctttcatcaagtttggaatccatggagtncca 404 ||| ||| | ||| || |||||||||| ||||||| ||| ||||| ||| Sbjct: 813 agataacaacagtaatttctttcatcagttttggaacccacggagttcca 764
>gb|AY107292.1| Zea mays PCO067487 mRNA sequence Length = 1391 Score = 91.7 bits (46), Expect = 2e-15 Identities = 137/170 (80%) Strand = Plus / Minus Query: 235 cttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtactnnttncagcgat 294 ||||||| || || ||||||| ||||||||| || | |||||| || || ||||||| Sbjct: 1022 cttttactaccaagaagtactccacagcaagtataattggtatgaacatcttccagcgat 963 Query: 295 tgttcggatttggaccgtngattaacttntgatcaacatgaatggacctgcttccatttg 354 |||| || |||||||| | |||||||| |||||||||||||||| | |||| || |||| Sbjct: 962 tgttagggtttggaccatcaattaacttctgatcaacatgaatgggcttgctcccgtttg 903 Query: 355 agacaacnatagtgatntctttcatcaagtttggaatccatggagtncca 404 ||| ||| | ||| || |||||||||| ||||||| ||| ||||| ||| Sbjct: 902 agataacaacagtaatttctttcatcagttttggaacccacggagttcca 853
>emb|AL603908.3| Human DNA sequence from clone RP11-331O9 on chromosome 6 Contains a cytochrome c oxidase II (MTCO2) pseudogene, an ATP synthase 8 (MTATP8) pseudogene, an ATP synthase 6 (MTATP6) pseudogene, a cytochrome c oxidase III (MTCO3) pseudogene, an NADH dehydrogenase 3 (MTND3) pseudogene, an NADH dehydrogenase 4L (NADH dehydrogenase, subunit 4L (complex I)) (MTND4L) pseudogene and an NADH dehydrogenase 4 (NADH dehydrogenase, subunit 4 (complex I)) (MTND4) pseudogene, complete sequence Length = 92896 Score = 44.1 bits (22), Expect = 0.35 Identities = 24/25 (96%) Strand = Plus / Plus Query: 366 gtgatntctttcatcaagtttggaa 390 ||||| ||||||||||||||||||| Sbjct: 1093 gtgatgtctttcatcaagtttggaa 1117
>emb|AL391426.9| Human DNA sequence from clone RP11-461F2 on chromosome 6, complete sequence Length = 27736 Score = 44.1 bits (22), Expect = 0.35 Identities = 24/25 (96%) Strand = Plus / Plus Query: 366 gtgatntctttcatcaagtttggaa 390 ||||| ||||||||||||||||||| Sbjct: 26829 gtgatgtctttcatcaagtttggaa 26853
>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete sequence Length = 167444 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 aacaaaagaacagcacaggaa 51 ||||||||||||||||||||| Sbjct: 37484 aacaaaagaacagcacaggaa 37464
>gb|AC124751.4| Mus musculus BAC clone RP23-274P18 from chromosome 13, complete sequence Length = 160979 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ctgcttccatttgagacaac 361 |||||||||||||||||||| Sbjct: 103552 ctgcttccatttgagacaac 103533
>gb|AC153143.4| Mus musculus BAC clone RP23-241N10 from chromosome 13, complete sequence Length = 207860 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ctgcttccatttgagacaac 361 |||||||||||||||||||| Sbjct: 29330 ctgcttccatttgagacaac 29311
>gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete sequence Length = 94665 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 ggagcaacaaaagaacagca 45 |||||||||||||||||||| Sbjct: 5473 ggagcaacaaaagaacagca 5454 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,799,780 Number of Sequences: 3902068 Number of extensions: 1799780 Number of successful extensions: 41330 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41282 Number of HSP's gapped (non-prelim): 43 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
