ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1d13 |
|---|---|
| Clone Library Name | barley_pub |
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 263 bits (672), Expect = 3e-70 Identities = 128/139 (92%), Positives = 134/139 (96%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP 462 G QTRSFTFIDECVEGVLRLTKSDF EPVNIGSDEMVSMNEMAEI+L FED++LPIHHIP Sbjct: 240 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIP 299 Query: 461 GPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKV 282 GPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKE+T+G D+A YGSSKV Sbjct: 300 GPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKV 359 Query: 281 VSTQAPVQLGSLRAADGKE 225 VSTQAPVQLGSLRAADGKE Sbjct: 360 VSTQAPVQLGSLRAADGKE 378
>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 2) Length = 371 Score = 254 bits (650), Expect = 1e-67 Identities = 124/139 (89%), Positives = 131/139 (94%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP 462 G QTRSFTFIDECVEGVLRLTKSDF EPVNIGSDEMVSMNEMAEIVL FE+K+LPIHHIP Sbjct: 233 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIP 292 Query: 461 GPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKV 282 GPEGVRGRNSDNTLIKEKLGWAPTM+LKDGLR TYFWIKEQ+EKE+ EG D++ YGSSKV Sbjct: 293 GPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKV 352 Query: 281 VSTQAPVQLGSLRAADGKE 225 V TQAPVQLGSLRAADGKE Sbjct: 353 VQTQAPVQLGSLRAADGKE 371
>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man| 3,5-epimerase) Length = 377 Score = 251 bits (640), Expect = 2e-66 Identities = 122/139 (87%), Positives = 129/139 (92%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP 462 G QTRSFTFIDECVEGVLRLTKSDF EPVNIGSDEMVSMNEMAE+VL FE+KKLPIHHIP Sbjct: 239 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIP 298 Query: 461 GPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKV 282 GPEGVRGRNSDN LIKEKLGWAP M+LK+GLR TYFWIKEQIEKE+ +G DV+ YGSSKV Sbjct: 299 GPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKV 358 Query: 281 VSTQAPVQLGSLRAADGKE 225 V TQAPVQLGSLRAADGKE Sbjct: 359 VGTQAPVQLGSLRAADGKE 377
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 57.8 bits (138), Expect = 3e-08 Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP 462 G QTR+F ++ + V G++ L S+ PVN+G+ E ++ E A+++ + I +P Sbjct: 291 GSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLP 350 Query: 461 -GPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKE 327 + + R D K LGW P + L++GL T + ++E + Sbjct: 351 EAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSRELEHQ 396
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHI- 465 G QTR+F ++ + V G++ L S+ PVN+G+ E ++ E A+++ I + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 464 PGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIE 333 + + R D K LGW P + L++GL + ++++E Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 396
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHI- 465 G QTR+F ++ + V G++ L S+ PVN+G+ E ++ E A+++ I + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 464 PGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIE 333 + + R D K LGW P + L++GL + ++++E Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 396
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHI- 465 G QTR+F ++ + V G++ L S+ PVN+G+ E ++ E A+++ I + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 464 PGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIE 333 + + R D K LGW P + L++GL + ++++E Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 396
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHI- 465 G QTR+F ++ + V G++ L S+ PVN+G+ E ++ E A+++ I + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 464 PGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIE 333 + + R D K LGW P + L++GL + ++++E Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 396
>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) Length = 328 Score = 53.1 bits (126), Expect = 7e-07 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKS-DFCEPVNIGSDEMVSMNEMAEIV---LGFEDKKLPI 474 G R F +D+ + V+ L E VN+GS V++ E+AE+V +GF+ K + Sbjct: 221 GSPLREFLHVDDLADAVIFLMDHYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKL--V 278 Query: 473 HHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQI 336 P+G + D++ I+E +GW P + LK+GL TY W E + Sbjct: 279 WDSSKPDGTPRKLMDSSKIQE-MGWKPKVPLKEGLVETYKWYVENV 323
>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) (AtGER2) Length = 328 Score = 52.4 bits (124), Expect = 1e-06 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%) Frame = -3 Query: 641 GXQTRSFTFIDECVEG-VLRLTKSDFCEPVNIGSDEMVSMNEMAEIV---LGFEDKKLPI 474 G R F +D+ + V + + E VN+GS V++ E+AE+V +GF+ K + Sbjct: 221 GSPLREFLHVDDLADACVFLMDQYSGFEHVNVGSGVEVTIKELAELVKEVVGFKGKL--V 278 Query: 473 HHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKER 324 P+G + D++ + LGW P + LKDGL TY W E + +++ Sbjct: 279 WDTTKPDGTPRKLMDSSKLAS-LGWTPKISLKDGLSQTYEWYLENVVQKK 327
>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) Length = 347 Score = 51.6 bits (122), Expect = 2e-06 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 3/104 (2%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEP-VNIGSDEMVSMNEMAEIVLGFEDKK-LPIHH 468 G R FT +D+ E V+ L + E VN+GS E V++ E+AE V G + + Sbjct: 237 GAAAREFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWD 296 Query: 467 IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY-FWIKEQ 339 PEGV R D+ ++ KLGW P + L+DG++ Y F+++ + Sbjct: 297 AARPEGVARRVVDSGRMR-KLGWEPRVALRDGIQDLYRFYLRHE 339
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 51.2 bits (121), Expect = 3e-06 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHI- 465 G QTR+F ++ + V G++ L S+ PVN+G+ + S+ + A ++ I + Sbjct: 294 GEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLS 353 Query: 464 PGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKE 327 + + R D K LGW P + L++GL T + ++++E + Sbjct: 354 EAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKELEHQ 399
>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) (AtGER1) (AtFX) Length = 312 Score = 51.2 bits (121), Expect = 3e-06 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Frame = -3 Query: 641 GXQTRSFTFIDECVEG-VLRLTKSDFCEPVNIGSDEMVSMNEMAEIV---LGFEDKKLPI 474 G R F +D+ + V L + E VNIGS + V++ E+AE+V +GFE K Sbjct: 207 GSPLREFLHVDDLADACVFLLDRYSGLEHVNIGSGQEVTIRELAELVKEVVGFEGKLG-- 264 Query: 473 HHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQI 336 P+G + D++ + LGW P + L+DGL TY W + + Sbjct: 265 WDCTKPDGTPRKLMDSSKLAS-LGWTPKVSLRDGLSQTYDWYLKNV 309
>Y1055_METJA (Q58455) Hypothetical protein MJ1055| Length = 326 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDF-CEPVNIGSDEMVSMNEMAEIVLGFEDKKLPIHHI 465 G R FT+I + V+G+LR K DF E N+G+ + V + E++ + +KK + Sbjct: 217 GNMERDFTYISDVVDGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFL 276 Query: 464 PGPEG-VRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKE 342 P +G V +D + ++ LG+ P + +++GL+ W E Sbjct: 277 PMQDGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWFLE 318
>GALE_METJA (Q57664) Putative UDP-glucose 4-epimerase (EC 5.1.3.2)| (Galactowaldenase) (UDP-galactose 4-epimerase) Length = 305 Score = 41.2 bits (95), Expect = 0.003 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPVNIGSDEMVSMNEMAEIV---LGFEDKKLPIH 471 G QTR F ++ + + L + + E VNIG+ + S+NE+ +I+ +GF + + Sbjct: 203 GNQTRDFVYVGDVAKANL-MALNWKNEIVNIGTGKETSVNELFDIIKHEIGFRGEAI--- 258 Query: 470 HIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIK 345 + EG R + E LGW P + LK+G++ W+K Sbjct: 259 YDKPREGEVYRIYLDIKKAESLGWKPEIDLKEGIKRVVNWMK 300
>YCL2_ECO11 (Q04871) Hypothetical 37.6 kDa protein in cld 5'region (ORF2)| Length = 334 Score = 37.4 bits (85), Expect = 0.038 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 24/124 (19%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRL----------------TKSDFCEP---VNIGSD---EMVS 528 G R FT+ID+ E ++RL T + P NIG+ E++ Sbjct: 211 GKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMD 270 Query: 527 MNEMAEIVLGFEDKK--LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYF 354 + E LG E KK LP+ P V ++D + E +G+ P +KDG++ Sbjct: 271 YIQALEDALGIEAKKNMLPLQ----PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVN 326 Query: 353 WIKE 342 W ++ Sbjct: 327 WYRD 330
>STRE_STRGR (P29782) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 328 Score = 35.4 bits (80), Expect = 0.14 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRL-TKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKL-PIHH 468 G R + +D+ V G+ + T+ NIG +S E+ ++L + + Sbjct: 210 GLNVREWLHVDDHVRGIEAVRTRGRAGRVYNIGGGATLSNKELVGLLLEAAGADWGSVEY 269 Query: 467 IPGPEGVRGRNS-DNTLIKEKLGWAPTMKLKDGLRFTYFW 351 + +G R + D+T I+ +LG+AP + L DGL T W Sbjct: 270 VEDRKGHDRRYAVDSTRIQRELGFAPAVDLADGLAATVAW 309
>ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 668 Score = 35.4 bits (80), Expect = 0.14 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 22/136 (16%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLT--KSDFC--EPVNIGS-DEMVSMNEMAEIVL-------- 501 G Q R FT I + +E + R+ ++D C + +NIG+ D S+ ++ E +L Sbjct: 533 GEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPL 592 Query: 500 --------GFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY-FWI 348 GF D + + G + V R K L W PT+++ + + T F++ Sbjct: 593 RGNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIDNAKRLLNWEPTVEMSETIGNTLDFFL 652 Query: 347 KEQIEKERTEGKDVAR 300 +E + + K AR Sbjct: 653 REAMLEIADRAKQEAR 668
>HLDD_DESVH (Q72ET7) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)| (ADP-L-glycero-beta-D-manno-heptose-6-epimerase) (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep 6-epimerase) (AGME) Length = 323 Score = 35.0 bits (79), Expect = 0.19 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEPV-NIGSDEMVSMNEMAEIVLGFEDKKLPIHHI 465 G Q R F ++ +CVE + L ++ V N+G+ + + N++ V D++ I +I Sbjct: 212 GGQMRDFIYVKDCVEVMWWLLQNPGVNGVFNVGTGKARTWNDLVTAVFRAMDREPVIEYI 271 Query: 464 PGPEGVRGR 438 PE +RG+ Sbjct: 272 DMPEQLRGK 280
>RMLB_STRMU (P95780) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 348 Score = 35.0 bits (79), Expect = 0.19 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Frame = -3 Query: 584 LTKSDFCEPVNIGSDEMVSMNEMAEIVLG-FEDKKLPIHHIPGPEGVRGRNS-DNTLIKE 411 LTK E IG+D + E+ E++L K H+ G R + D+T ++E Sbjct: 241 LTKGRIGETYLIGADGEKNNKEVLELILEKMSQPKNAYDHVTDRAGHDLRYAIDSTKLRE 300 Query: 410 KLGWAPTM-KLKDGLRFTYFWIKE-----QIEKERTE 318 +LGW P ++GL T W E + EKE E Sbjct: 301 ELGWKPQFTNFEEGLEDTIKWYTEHEDWWKAEKEAVE 337
>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 33.9 bits (76), Expect = 0.42 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 21/115 (18%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRL--TKSDFCEP--VNIGS-DEMVSMNEMAEIVLGFEDKKLP 477 G Q R FT I + +E + R+ D C+ +NIG+ D S+ E+A ++L DK Sbjct: 531 GQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPL 590 Query: 476 IHHIP----------------GPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFT 360 H P G + V R + LGW P++ ++D + T Sbjct: 591 RCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEET 645
>TGDS_HUMAN (O95455) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 350 Score = 33.5 bits (75), Expect = 0.55 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 8/108 (7%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLR-LTKSDFCEPVNIGSDEMVSMNEMA-EIVLGFEDKKLPIHH 468 G QTR+F + + VE L L K E NIG++ +S+ ++A E++ ++ Sbjct: 226 GLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEM 285 Query: 467 IPGPEGVRGRNSDNTLIKEK------LGWAPTMKLKDGLRFTYFWIKE 342 + V R +++ K LGW P + K+G++ T W +E Sbjct: 286 ENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRE 333
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 33.1 bits (74), Expect = 0.71 Identities = 27/95 (28%), Positives = 41/95 (43%) Frame = +1 Query: 292 DPYRATSFPSVLSFSICSLIQK*VNLRPSLSFIVGAQPSFSLMRVLSELRPRTPSGPGMW 471 D Y + P+ S+SI + PS+S P S + SE T + P + Sbjct: 101 DTYSSQYDPATSSYSI---------ITPSMSIFSSTSPMSSSSSITSEWSSLTSTTPTLS 151 Query: 472 WMGSFLSSKPRTISAISFMLTISSLPMFTGSQKSD 576 + LSS ++S+ S +L SSL + S SD Sbjct: 152 SSATSLSSSWSSLSSPSSLLVSSSLSLSLSSSYSD 186
>ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 662 Score = 32.3 bits (72), Expect = 1.2 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 21/127 (16%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRL--TKSDFCEP--VNIGS-DEMVSMNEMAEIVL-------- 501 G Q R FT +D+ +E + R+ + C+ VNIG+ D S+ ++ E +L Sbjct: 532 GAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPL 591 Query: 500 --------GFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIK 345 GF + + + G + V R + L W PT++L++ + T + Sbjct: 592 RAQFPPFAGFREVESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFL 651 Query: 344 EQIEKER 324 + +ER Sbjct: 652 HEALRER 658
>RFFG_HAEIN (P44914) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 338 Score = 31.6 bits (70), Expect = 2.1 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%) Frame = -3 Query: 641 GXQTRSFTFIDECVEG-VLRLTKSDFCEPVNIGSD------EMVS-----MNEMAEI--- 507 G Q R + F+++ V+ L LTK E NIG + E+V + E+A Sbjct: 220 GQQIRDWLFVEDHVQASYLVLTKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPN 279 Query: 506 -VLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFW 351 + +ED + PG + VR + D + I +LGW P + + GLR T W Sbjct: 280 HIKYYEDLMTFVKDRPGHD-VR-YSLDCSKIHAELGWQPQITFEQGLRQTVKW 330
>ARNA_ERWCT (Q6D2F1) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 673 Score = 31.2 bits (69), Expect = 2.7 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 21/128 (16%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRL--TKSDFCEP--VNIGSDEM-VSMNEMAEIVL-------- 501 G Q R FT I + +E + R+ ++ C+ +NIG+ S+ E+ E++L Sbjct: 538 GAQKRCFTDIHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPL 597 Query: 500 --------GFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIK 345 GF D + ++ G + V R K L W PT+K++ + T + Sbjct: 598 RDRFPPFAGFIDVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFL 657 Query: 344 EQIEKERT 321 ++ T Sbjct: 658 RTVDVPHT 665
>FCL_ECOLI (P32055) GDP-L-fucose synthetase (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) Length = 321 Score = 30.8 bits (68), Expect = 3.5 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = -3 Query: 557 VNIGSDEMVSMNEMAEI---VLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM 387 +N+G+ ++ E+A+ V+G++ + + P+G + D T + + LGW + Sbjct: 243 INVGTGVDCTIRELAQTIAKVVGYKGRV--VFDASKPDGTPRKLLDVTRLHQ-LGWYHEI 299 Query: 386 KLKDGLRFTYFWIKEQIEKER 324 L+ GL TY W E ++ R Sbjct: 300 SLEAGLASTYQWFLENQDRFR 320
>TGDS_MOUSE (Q8VDR7) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 355 Score = 30.8 bits (68), Expect = 3.5 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLR-LTKSDFCEPVNIGSDEMVSMNEMA-EIVLGFEDKKLPIHH 468 G Q R+F + + VE L LTK + E NIG++ +S+ ++A E++ ++ Sbjct: 226 GLQRRNFLYAADVVEAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESET 285 Query: 467 IPGPEGVRGRNSDNTLIKEK------LGWAPTMKLKDGLRFTYFWIKEQIEKERTEGK 312 + V R ++ K LGW P + ++G++ T W ++ + K Sbjct: 286 ESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRKNFHNWKNAEK 343
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 30.8 bits (68), Expect = 3.5 Identities = 34/105 (32%), Positives = 49/105 (46%) Frame = +1 Query: 310 SFPSVLSFSICSLIQK*VNLRPSLSFIVGAQPSFSLMRVLSELRPRTPSGPGMWWMGSFL 489 S PS+ S S S Q L +LS + ++ S S M+V S T S S Sbjct: 74 STPSIASVSFTSFPQSSSLL--TLSSTLSSELSSSSMQVSSS---STSSSSSEVTSSSSS 128 Query: 490 SSKPRTISAISFMLTISSLPMFTGSQKSDFVNLRTPSTHSSIKVN 624 SS + S+ + + + SSLP FT + S V T ST SS+ ++ Sbjct: 129 SSISPSSSSSTIISSSSSLPTFTVASTSSTVASSTLSTSSSLVIS 173
>NOLK_AZOCA (P33217) Nodulation protein nolK| Length = 312 Score = 30.4 bits (67), Expect = 4.6 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKSDFCEP--VNIGSDEMVSMNEMAEIV---LGFEDKKLP 477 G R F F + + +++ + P +N+G + +S+ E +V +G+ + Sbjct: 205 GTARREFMFAYDFAKIIIKALEVPELIPSSMNVGVGKDLSVLEYYSLVARVIGWSGEF-- 262 Query: 476 IHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY 357 ++ + P G+R + D T + LGW P L+ G+R TY Sbjct: 263 VYDLNRPVGMRSKLMDITHLTA-LGWVPERSLEGGIRSTY 301
>SO1C1_HUMAN (Q9NYB5) Solute carrier organic anion transporter family member 1C1| (Solute carrier family 21 member 14) (Organic anion transporter F) (OATP-F) (Organic anion-transporting polypeptide 14) (Organic anion transporter polypeptide-related protein Length = 712 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Frame = +1 Query: 436 LRPRTPSGPGMWWMGSFLSSKPRTISAISFMLTISSLPMF-------TGSQKSDFV 582 + P+ P G WW+G ++ ++A+ F SLP + S+KS F+ Sbjct: 263 ITPKDPQWVGAWWLGYLIAGIISLLAAVPFWYLPKSLPRSQSREDSNSSSEKSKFI 318
>ARNA_PSE14 (Q48HZ1) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 663 Score = 30.4 bits (67), Expect = 4.6 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 22/127 (17%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVLRLTKS-DFC---EPVNIGS-DEMVSMNEMAEIVL-------- 501 G Q R FT + + +E + R+ ++ D C + +NIG+ D S+ ++ E +L Sbjct: 533 GAQKRCFTDVADGIEALARIIENRDGCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPL 592 Query: 500 --------GFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY-FWI 348 GF + + + G + V R ++ +GW P ++L + + T F++ Sbjct: 593 RGNFPPFAGFREVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSETIGKTLDFFL 652 Query: 347 KEQIEKE 327 +E + ++ Sbjct: 653 REAMAEK 659
>RY44_DROME (Q24498) Ryanodine receptor 44F| Length = 5127 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +3 Query: 183 QWHNRPGVDMHSCLLLAVSRAEGAQLHRCLCGHHL 287 Q R G D H LL + AEGA+L C HHL Sbjct: 1974 QAFEREGKDEHRKGLLTMKMAEGAKLQMCYLLHHL 2008
>PANC_NEIMA (P57035) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 278 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -3 Query: 359 YFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 225 Y W+ + +E R + +VAR G K+V A +LG+ R D E Sbjct: 231 YGWVVDYVEIRRVDTLEVARAGDKKLV-VLAAARLGTTRLIDNLE 274
>GALE_MOUSE (Q8R059) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 347 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVL----RLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPI 474 G R + + + +G + +L + C N+G+ S+ +M + + KK+P Sbjct: 234 GTGVRDYIHVVDLAKGHIAALKKLKEQCGCRTYNLGTGTGYSVLQMVQAMEKASGKKIPY 293 Query: 473 HHIPGPEG-VRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKE 342 + EG V ++ +L E+LGW + L + W K+ Sbjct: 294 KVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQ 338
>GALE_HUMAN (Q14376) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 348 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Frame = -3 Query: 641 GXQTRSFTFIDECVEGVL----RLTKSDFCEPVNIGSDEMVSMNEMAEIVLGFEDKKLPI 474 G R + + + +G + +L + C N+G+ S+ +M + + KK+P Sbjct: 235 GTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPY 294 Query: 473 HHIPGPEG-VRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKE 342 + EG V ++ +L +E+LGW + L + W K+ Sbjct: 295 KVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQ 339
>POL_OMVVS (P16901) Pol polyprotein [Contains: Protease (EC 3.4.23.-)| (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1086 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = -3 Query: 602 VEGVLRLTKSDFCEPVNI-GSDEMVSMNEMAEIVLGFEDKKLPIHHIPGPEGVRGRNSDN 426 +EG + + S PV + G D M + ++ I+ E+KK+PI + EG +G + Sbjct: 91 IEGTIVVLPSS---PVEVLGRDNMAKL-DIGIIMANLEEKKIPITQVKLKEGCKGPHIAQ 146 Query: 425 TLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGK 312 W T + +GL KE ++K EGK Sbjct: 147 --------WPLTQEKLEGL-------KEIVDKLEKEGK 169
>Y2889_PHOPR (Q6LN94) UPF0247 protein PBPRA2889| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = -3 Query: 488 KKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYF------W----IKEQ 339 K +P+ I P G RG+N+D I +K G A + G R W + +Q Sbjct: 29 KDMPLELIEIPAGKRGKNADIARILQKEGEAMLATVAKGNRIVTLDIPGKRWDTGQLAQQ 88 Query: 338 IEKERTEGKDVA 303 ++ + +G+DV+ Sbjct: 89 LDSWKLDGRDVS 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,367,373 Number of Sequences: 219361 Number of extensions: 1823310 Number of successful extensions: 5697 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 5452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5685 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
